Wall clock time and date at job start Mon Mar 30 2020 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47403 * 2 1 4 4 C 1.38655 * 119.87331 * 264.99812 * 3 2 1 5 5 C 1.38613 * 120.50284 * 179.97438 * 4 3 2 6 6 C 1.37641 * 120.24457 * 0.02562 * 5 4 3 7 7 C 1.40696 * 119.74639 * 0.25842 * 6 5 4 8 8 C 1.41397 * 120.24318 * 179.71490 * 7 6 5 9 9 H 1.08000 * 119.99895 * 213.36556 * 8 7 6 10 10 C 1.39939 * 120.00098 * 33.37575 * 8 7 6 11 11 N 1.30823 * 120.00398 * 210.46430 * 10 8 7 12 12 Si 1.86805 * 119.99866 * 30.46025 * 10 8 7 13 13 H 1.48506 * 109.46964 * 95.06575 * 12 10 8 14 14 H 1.48500 * 109.47075 * 215.06213 * 12 10 8 15 15 H 1.48496 * 109.47435 * 335.06559 * 12 10 8 16 16 C 1.37593 * 119.87867 * 84.97162 * 3 2 1 17 17 C 1.50703 * 120.12599 * 0.02562 * 16 3 2 18 18 H 1.08999 * 109.46822 * 345.92070 * 17 16 3 19 19 Cl 1.80297 * 109.47148 * 225.91971 * 17 16 3 20 20 C 1.50701 * 109.46904 * 105.91855 * 17 16 3 21 21 C 1.50697 * 120.00275 * 274.99922 * 20 17 16 22 22 O 1.20761 * 119.99531 * 95.00452 * 20 17 16 23 23 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47604 * 300.00325 * 1 2 3 25 25 H 1.09008 * 109.46807 * 60.00701 * 1 2 3 26 26 H 1.08997 * 109.47604 * 239.99675 * 2 1 3 27 27 H 1.08997 * 109.47245 * 119.99554 * 2 1 3 28 28 H 1.08005 * 119.75147 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.87492 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.12342 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00490 * 179.97438 * 11 10 8 32 32 H 1.08997 * 109.47020 * 359.97438 * 21 20 17 33 33 H 1.09001 * 109.47108 * 120.00539 * 21 20 17 34 34 H 1.09003 * 109.47201 * 240.00418 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3614 2.0370 -1.1977 5 6 2.8243 3.3435 -1.2130 6 6 2.9626 4.0437 -0.0361 7 6 2.6374 3.4266 1.1858 8 6 2.7813 4.1342 2.4015 9 1 3.0642 3.6089 3.3018 10 6 2.5569 5.5150 2.4382 11 7 3.2111 6.2616 3.2903 12 14 1.3232 6.2921 1.2705 13 1 0.0096 6.4198 1.9514 14 1 1.8040 7.6377 0.8662 15 1 1.1751 5.4367 0.0657 16 6 2.1623 2.1019 1.1885 17 6 1.8038 1.4296 2.4887 18 1 1.2362 0.5219 2.2838 19 17 0.8062 2.5494 3.4893 20 6 3.0641 1.0761 3.2355 21 6 3.7825 -0.2137 2.9334 22 8 3.4983 1.8265 4.0762 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.2563 1.4949 -2.1260 29 1 3.0772 3.8137 -2.1517 30 1 3.3238 5.0614 -0.0502 31 1 3.0558 7.2188 3.3155 32 1 3.2459 -0.7544 2.1539 33 1 4.7947 0.0052 2.5935 34 1 3.8261 -0.8251 3.8348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396057913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:15 Heat of formation + Delta-G solvation = -34.109469 kcal Electronic energy + Delta-G solvation = -18694.221562 eV Core-core repulsion = 15810.507671 eV Total energy + Delta-G solvation = -2883.713891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.28795 -37.82923 -34.85743 -34.34011 -32.97134 -31.55976 -29.92890 -28.84847 -26.53149 -24.75186 -23.14163 -20.66952 -20.12995 -18.71517 -17.06185 -15.84732 -15.67140 -15.08157 -14.89177 -14.29570 -14.09460 -13.71441 -13.15920 -12.89512 -12.65446 -12.37501 -12.20622 -11.89561 -11.83669 -11.58859 -11.45133 -11.32565 -10.91305 -10.81510 -10.56376 -10.13624 -9.96933 -9.93462 -9.65267 -9.13835 -8.98051 -8.87379 -7.48275 -7.35174 -6.91519 -4.31087 2.21390 2.62662 2.73311 3.12866 3.21821 3.26665 3.36017 4.06467 4.42907 4.67694 5.25635 5.34938 5.39206 5.45536 5.50256 5.64395 5.75668 5.80936 5.86618 6.06566 6.10667 6.17386 6.25920 6.31550 6.47069 6.58049 6.71344 6.97245 7.21044 7.39954 7.62844 7.75458 7.94491 8.02545 8.16007 8.61073 8.71131 8.92534 10.05940 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.011210 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.875344 B = 2497.255105 C = 3234.062797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.025 4.025 4 C -0.249 4.249 5 C -0.079 4.079 6 C -0.207 4.207 7 C 0.097 3.903 8 C -0.431 4.431 9 H 0.126 0.874 10 C 0.099 3.901 11 N -0.782 5.782 12 Si 0.867 3.133 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.222 1.222 16 C -0.214 4.214 17 C 0.021 3.979 18 H 0.106 0.894 19 Cl -0.152 7.152 20 C 0.348 3.652 21 C -0.196 4.196 22 O -0.423 6.423 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.283 0.717 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -9.884 -3.928 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.025 4.025 4 C -0.268 4.268 5 C -0.097 4.097 6 C -0.227 4.227 7 C 0.093 3.907 8 C -0.457 4.457 9 H 0.144 0.856 10 C -0.123 4.123 11 N -0.404 5.404 12 Si 0.690 3.310 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.144 1.144 16 C -0.216 4.216 17 C -0.024 4.024 18 H 0.124 0.876 19 Cl -0.124 7.124 20 C 0.221 3.779 21 C -0.253 4.253 22 O -0.294 6.294 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.741 -9.152 -3.207 10.077 hybrid contribution -0.584 0.676 -0.554 1.052 sum -3.325 -8.476 -3.761 9.851 Atomic orbital electron populations 1.21751 0.95399 1.00599 1.02581 1.20616 0.95835 0.94673 1.01433 1.19084 0.96987 0.93696 0.92776 1.20087 1.14894 0.96416 0.95430 1.20612 0.98108 0.94536 0.96453 1.20995 1.09432 0.99400 0.92839 1.17413 0.89204 0.91240 0.92844 1.20136 1.36043 0.92026 0.97459 0.85631 1.26095 0.94545 0.97075 0.94584 1.69845 1.31238 1.07229 1.32125 0.86817 0.81700 0.78677 0.83824 1.19776 1.20553 1.14444 1.18722 1.15279 0.97884 0.89693 1.23026 0.92717 0.94079 0.92534 0.87579 1.98705 1.71795 1.69124 1.72825 1.24630 0.86159 0.86636 0.80515 1.22223 1.02601 0.96942 1.03544 1.90412 1.63754 1.48047 1.27174 0.93294 0.92353 0.92591 0.91820 0.91947 0.89020 0.89118 0.88803 0.90597 0.90279 0.89033 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.69 37.15 0.36 -1.60 16 2 C -0.09 -1.29 5.35 -27.88 -0.15 -1.43 16 3 C -0.03 -0.48 5.13 -104.70 -0.54 -1.01 16 4 C -0.25 -4.90 9.68 -39.29 -0.38 -5.28 16 5 C -0.08 -1.66 10.02 -39.66 -0.40 -2.06 16 6 C -0.21 -4.90 6.81 -38.87 -0.26 -5.17 16 7 C 0.10 2.37 4.78 -106.83 -0.51 1.86 16 8 C -0.43 -11.43 6.63 -37.74 -0.25 -11.68 16 9 H 0.13 3.58 4.14 -52.49 -0.22 3.36 16 10 C 0.10 2.60 5.15 -17.34 -0.09 2.52 16 11 N -0.78 -21.09 13.93 55.55 0.77 -20.32 16 12 Si 0.87 20.12 26.41 -169.99 -4.49 15.63 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.22 -5.17 5.50 56.52 0.31 -4.86 16 16 C -0.21 -4.58 4.89 -103.91 -0.51 -5.09 16 17 C 0.02 0.40 2.58 -29.03 -0.07 0.32 16 18 H 0.11 1.69 5.06 -51.93 -0.26 1.43 16 19 Cl -0.15 -3.29 24.83 -51.86 -1.29 -4.58 16 20 C 0.35 6.61 6.10 -29.04 -0.18 6.43 16 21 C -0.20 -2.68 10.33 36.00 0.37 -2.30 16 22 O -0.42 -9.76 14.52 6.00 0.09 -9.67 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 25 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 27 H 0.06 0.81 4.66 -51.93 -0.24 0.57 16 28 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.09 2.23 6.27 -52.49 -0.33 1.90 16 31 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 32 H 0.08 0.90 6.01 -51.93 -0.31 0.59 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -29.03 285.05 -7.15 -36.18 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.92 Total: 2.96 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.61 Total: -24.50 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.77 Total: -20.32 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.49 Total: 15.63 kcal Atomic # 17 Polarization: -3.29 SS G_CDS: -1.29 Total: -4.58 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.03 -7.15 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.074 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds