Wall clock time and date at job start Mon Mar 30 2020 07:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47403 * 2 1 4 4 C 1.38655 * 119.87331 * 264.99812 * 3 2 1 5 5 C 1.38613 * 120.50284 * 179.97438 * 4 3 2 6 6 C 1.37641 * 120.24457 * 0.02562 * 5 4 3 7 7 C 1.40696 * 119.74639 * 0.25842 * 6 5 4 8 8 C 1.41397 * 120.24318 * 179.71490 * 7 6 5 9 9 H 1.08000 * 119.99895 * 213.36556 * 8 7 6 10 10 C 1.39939 * 120.00098 * 33.37575 * 8 7 6 11 11 N 1.30823 * 120.00398 * 210.46430 * 10 8 7 12 12 Si 1.86805 * 119.99866 * 30.46025 * 10 8 7 13 13 H 1.48506 * 109.46964 * 95.06575 * 12 10 8 14 14 H 1.48500 * 109.47075 * 215.06213 * 12 10 8 15 15 H 1.48496 * 109.47435 * 335.06559 * 12 10 8 16 16 C 1.37593 * 119.87867 * 84.97162 * 3 2 1 17 17 C 1.50703 * 120.12599 * 0.02562 * 16 3 2 18 18 H 1.08999 * 109.46822 * 345.92070 * 17 16 3 19 19 Cl 1.80297 * 109.47148 * 225.91971 * 17 16 3 20 20 C 1.50701 * 109.46904 * 105.91855 * 17 16 3 21 21 C 1.50697 * 120.00275 * 274.99922 * 20 17 16 22 22 O 1.20761 * 119.99531 * 95.00452 * 20 17 16 23 23 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47604 * 300.00325 * 1 2 3 25 25 H 1.09008 * 109.46807 * 60.00701 * 1 2 3 26 26 H 1.08997 * 109.47604 * 239.99675 * 2 1 3 27 27 H 1.08997 * 109.47245 * 119.99554 * 2 1 3 28 28 H 1.08005 * 119.75147 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.87492 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.12342 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00490 * 179.97438 * 11 10 8 32 32 H 1.08997 * 109.47020 * 359.97438 * 21 20 17 33 33 H 1.09001 * 109.47108 * 120.00539 * 21 20 17 34 34 H 1.09003 * 109.47201 * 240.00418 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3614 2.0370 -1.1977 5 6 2.8243 3.3435 -1.2130 6 6 2.9626 4.0437 -0.0361 7 6 2.6374 3.4266 1.1858 8 6 2.7813 4.1342 2.4015 9 1 3.0642 3.6089 3.3018 10 6 2.5569 5.5150 2.4382 11 7 3.2111 6.2616 3.2903 12 14 1.3232 6.2921 1.2705 13 1 0.0096 6.4198 1.9514 14 1 1.8040 7.6377 0.8662 15 1 1.1751 5.4367 0.0657 16 6 2.1623 2.1019 1.1885 17 6 1.8038 1.4296 2.4887 18 1 1.2362 0.5219 2.2838 19 17 0.8062 2.5494 3.4893 20 6 3.0641 1.0761 3.2355 21 6 3.7825 -0.2137 2.9334 22 8 3.4983 1.8265 4.0762 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.2563 1.4949 -2.1260 29 1 3.0772 3.8137 -2.1517 30 1 3.3238 5.0614 -0.0502 31 1 3.0558 7.2188 3.3155 32 1 3.2459 -0.7544 2.1539 33 1 4.7947 0.0052 2.5935 34 1 3.8261 -0.8251 3.8348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396057913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:12 Heat of formation + Delta-G solvation = -50.351145 kcal Electronic energy + Delta-G solvation = -18694.925854 eV Core-core repulsion = 15810.507671 eV Total energy + Delta-G solvation = -2884.418183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.87145 -39.44944 -36.47794 -35.96172 -34.60251 -33.15784 -31.38401 -30.26060 -28.04565 -26.50497 -24.45241 -22.33073 -21.68078 -20.23586 -18.84368 -17.50062 -17.19360 -16.62720 -16.57604 -15.74024 -15.68069 -15.12640 -14.79733 -14.31912 -14.20324 -13.87486 -13.58137 -13.37192 -13.28126 -13.04503 -12.95385 -12.81271 -12.53214 -12.41471 -11.93914 -11.64539 -11.62890 -11.55240 -11.31045 -10.86388 -10.75162 -10.45990 -9.14951 -9.07863 -8.80185 -6.21829 0.59583 0.89227 1.16326 1.27757 1.40758 1.46887 1.69576 2.18378 2.67097 3.17050 3.63743 3.97217 4.10798 4.19204 4.21163 4.31319 4.55399 4.64019 4.68218 4.70821 4.84801 4.89210 5.01438 5.07101 5.18360 5.22545 5.28123 5.50203 5.54385 5.71738 5.95653 6.07136 6.20451 6.38357 6.56796 6.77585 6.89413 7.03700 8.23316 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.011210 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.875344 B = 2497.255105 C = 3234.062797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.025 4.025 4 C -0.233 4.233 5 C -0.084 4.084 6 C -0.235 4.235 7 C 0.080 3.920 8 C -0.462 4.462 9 H 0.100 0.900 10 C 0.065 3.935 11 N -0.836 5.836 12 Si 0.912 3.088 13 H -0.278 1.278 14 H -0.272 1.272 15 H -0.223 1.223 16 C -0.213 4.213 17 C 0.017 3.983 18 H 0.146 0.854 19 Cl -0.179 7.179 20 C 0.342 3.658 21 C -0.187 4.187 22 O -0.474 6.474 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.286 0.714 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -13.581 -6.685 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.026 4.026 4 C -0.252 4.252 5 C -0.102 4.102 6 C -0.255 4.255 7 C 0.077 3.923 8 C -0.490 4.490 9 H 0.117 0.883 10 C -0.151 4.151 11 N -0.462 5.462 12 Si 0.734 3.266 13 H -0.205 1.205 14 H -0.197 1.197 15 H -0.145 1.145 16 C -0.215 4.215 17 C -0.026 4.026 18 H 0.163 0.837 19 Cl -0.152 7.152 20 C 0.218 3.782 21 C -0.244 4.244 22 O -0.348 6.348 23 H 0.100 0.900 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.585 -12.869 -5.992 14.641 hybrid contribution -0.348 1.514 0.077 1.555 sum -3.933 -11.355 -5.915 13.393 Atomic orbital electron populations 1.21750 0.94423 1.02511 1.01594 1.20737 0.96484 0.91414 1.03828 1.19634 0.95319 0.96156 0.91441 1.20651 1.11684 0.95708 0.97179 1.20986 0.97361 0.95285 0.96553 1.21065 1.11142 0.99467 0.93802 1.17660 0.89329 0.92807 0.92470 1.20003 1.39184 0.92366 0.97453 0.88285 1.26602 0.95432 0.97463 0.95635 1.69893 1.33640 1.07580 1.35103 0.86141 0.79839 0.78361 0.82267 1.20453 1.19683 1.14513 1.19065 1.13790 0.96903 0.91715 1.23416 0.93427 0.94383 0.91404 0.83674 1.98705 1.72600 1.70251 1.73630 1.25410 0.85709 0.87876 0.79167 1.22265 1.02123 0.94129 1.05879 1.90418 1.64728 1.50115 1.29523 0.89999 0.93917 0.93133 0.89197 0.89908 0.85438 0.86560 0.90200 0.90321 0.87171 0.88813 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.69 71.98 0.70 -2.42 16 2 C -0.09 -2.00 5.35 29.85 0.16 -1.84 16 3 C -0.03 -0.85 5.13 -19.92 -0.10 -0.95 16 4 C -0.23 -8.06 9.68 22.46 0.22 -7.84 16 5 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16 6 C -0.24 -11.05 6.81 22.73 0.15 -10.90 16 7 C 0.08 3.96 4.78 -21.29 -0.10 3.86 16 8 C -0.46 -25.64 6.63 23.46 0.16 -25.48 16 9 H 0.10 5.99 4.14 -2.91 -0.01 5.98 16 10 C 0.06 3.58 5.15 85.26 0.44 4.02 16 11 N -0.84 -48.17 13.93 21.82 0.30 -47.87 16 12 Si 0.91 43.17 26.41 68.60 1.81 44.98 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.22 -10.36 5.50 99.48 0.55 -9.81 16 16 C -0.21 -8.70 4.89 -19.41 -0.09 -8.80 16 17 C 0.02 0.64 2.58 29.10 0.08 0.71 16 18 H 0.15 4.08 5.06 -2.39 -0.01 4.07 16 19 Cl -0.18 -7.88 24.83 -2.72 -0.07 -7.95 16 20 C 0.34 12.61 6.10 29.10 0.18 12.78 16 21 C -0.19 -4.42 10.33 71.23 0.74 -3.68 16 22 O -0.47 -22.45 14.52 -1.45 -0.02 -22.47 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.05 7.34 -2.39 -0.02 1.03 16 25 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 1.68 8.05 -2.39 -0.02 1.67 16 27 H 0.08 1.58 4.66 -2.39 -0.01 1.56 16 28 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 30 H 0.08 3.89 6.27 -2.91 -0.02 3.87 16 31 H 0.29 15.04 8.30 -92.71 -0.77 14.27 16 32 H 0.11 1.87 6.01 -2.39 -0.01 1.86 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -67.99 285.05 5.73 -62.26 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.96 Total: 14.67 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.74 Total: -43.62 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.30 Total: -47.87 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.02 Total: -22.47 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.81 Total: 44.98 kcal Atomic # 17 Polarization: -7.88 SS G_CDS: -0.07 Total: -7.95 kcal Total: -67.99 5.73 -62.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.909 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds