Wall clock time and date at job start Mon Mar 30 2020 07:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47527 * 2 1 4 4 C 1.38648 * 119.87604 * 265.65001 * 3 2 1 5 5 C 1.38609 * 120.50121 * 179.72345 * 4 3 2 6 6 C 1.37642 * 120.24918 * 0.26939 * 5 4 3 7 7 C 1.40699 * 119.74346 * 0.02562 * 6 5 4 8 8 C 1.41392 * 120.24494 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00049 * 214.51191 * 8 7 6 10 10 C 1.39943 * 120.00101 * 34.50935 * 8 7 6 11 11 N 1.30826 * 119.99767 * 6.85345 * 10 8 7 12 12 Si 1.86797 * 120.00040 * 186.84803 * 10 8 7 13 13 H 1.48497 * 109.47357 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47016 * 120.00069 * 12 10 8 15 15 H 1.48502 * 109.47488 * 240.00121 * 12 10 8 16 16 C 1.37596 * 119.87087 * 85.92709 * 3 2 1 17 17 C 1.50701 * 120.13145 * 359.97438 * 16 3 2 18 18 H 1.08991 * 109.47081 * 3.10415 * 17 16 3 19 19 Cl 1.80297 * 109.47148 * 123.11056 * 17 16 3 20 20 C 1.50706 * 109.46644 * 243.10648 * 17 16 3 21 21 C 1.50698 * 120.00026 * 54.62005 * 20 17 16 22 22 O 1.20767 * 119.99755 * 234.60924 * 20 17 16 23 23 H 1.09005 * 109.46961 * 52.93361 * 1 2 3 24 24 H 1.08997 * 109.47370 * 172.93625 * 1 2 3 25 25 H 1.09004 * 109.46747 * 292.93635 * 1 2 3 26 26 H 1.09003 * 109.47247 * 240.00073 * 2 1 3 27 27 H 1.08998 * 109.47280 * 120.00412 * 2 1 3 28 28 H 1.08001 * 119.75276 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.87789 * 180.29959 * 5 4 3 30 30 H 1.08001 * 120.13179 * 180.02562 * 6 5 4 31 31 H 0.97000 * 119.99580 * 179.97438 * 11 10 8 32 32 H 1.08992 * 109.47181 * 354.17592 * 21 20 17 33 33 H 1.09002 * 109.47316 * 114.17927 * 21 20 17 34 34 H 1.08997 * 109.46790 * 234.17945 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3486 2.0415 -1.1988 5 6 2.8064 3.3498 -1.2143 6 6 2.9572 4.0456 -0.0363 7 6 2.6452 3.4238 1.1866 8 6 2.7957 4.1289 2.4029 9 1 3.1067 3.6060 3.2953 10 6 2.5418 5.5042 2.4504 11 7 2.0377 6.1127 1.4077 12 14 2.9225 6.4712 4.0026 13 1 3.4820 5.5572 5.0305 14 1 3.9132 7.5335 3.6935 15 1 1.6756 7.0919 4.5176 16 6 2.1810 2.0952 1.1901 17 6 1.8419 1.4159 2.4919 18 1 1.5503 0.3838 2.2980 19 17 3.2826 1.4401 3.5756 20 6 0.7015 2.1438 3.1560 21 6 -0.5854 2.3721 2.4059 22 8 0.8189 2.5438 4.2895 23 1 -0.3633 0.6194 -0.8201 24 1 -0.3634 -1.0198 -0.1264 25 1 -0.3633 0.4005 0.9465 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2336 1.5030 -2.1278 29 1 3.0452 3.8251 -2.1542 30 1 3.3136 5.0650 -0.0507 31 1 1.8613 7.0660 1.4408 32 1 -0.4695 2.0372 1.3752 33 1 -1.3885 1.8100 2.8825 34 1 -0.8290 3.4345 2.4174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396057915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:18 Heat of formation + Delta-G solvation = -39.072065 kcal Electronic energy + Delta-G solvation = -18776.452766 eV Core-core repulsion = 15892.523681 eV Total energy + Delta-G solvation = -2883.929085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.16262 -37.74107 -34.96977 -34.40182 -32.82892 -31.50978 -29.34647 -28.62861 -26.40019 -24.95922 -23.05695 -20.83658 -19.84472 -18.61568 -16.97686 -15.75508 -15.38191 -15.18253 -14.81749 -14.24949 -14.04260 -13.57666 -13.04174 -13.00571 -12.52614 -12.27170 -12.10123 -11.87713 -11.55411 -11.44401 -11.28252 -11.16100 -10.88609 -10.71137 -10.51085 -10.43603 -10.10445 -9.84329 -9.56146 -9.22925 -8.93575 -8.76292 -7.45516 -7.29553 -6.74460 -4.43385 2.42950 2.64507 2.77270 3.12359 3.17702 3.23531 3.28751 4.01315 4.56486 4.81790 5.34836 5.41184 5.50996 5.58048 5.66301 5.74171 5.84534 5.95145 6.01862 6.09290 6.20898 6.23581 6.39271 6.48701 6.58000 6.63893 7.01792 7.17753 7.27983 7.47505 7.71341 7.92603 8.04332 8.16145 8.19981 8.62869 8.84158 8.88897 10.20564 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.010338 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.562662 B = 2707.879701 C = 3371.365211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.041 4.041 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.149 4.149 7 C 0.135 3.865 8 C -0.465 4.465 9 H 0.106 0.894 10 C 0.077 3.923 11 N -0.802 5.802 12 Si 0.903 3.097 13 H -0.256 1.256 14 H -0.274 1.274 15 H -0.274 1.274 16 C -0.210 4.210 17 C 0.023 3.977 18 H 0.112 0.888 19 Cl -0.169 7.169 20 C 0.374 3.626 21 C -0.198 4.198 22 O -0.447 6.447 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.278 0.722 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -6.882 -1.655 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.124 4.124 3 C -0.041 4.041 4 C -0.250 4.250 5 C -0.119 4.119 6 C -0.168 4.168 7 C 0.133 3.867 8 C -0.494 4.494 9 H 0.124 0.876 10 C -0.140 4.140 11 N -0.428 5.428 12 Si 0.728 3.272 13 H -0.180 1.180 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.212 4.212 17 C -0.021 4.021 18 H 0.130 0.870 19 Cl -0.142 7.142 20 C 0.248 3.752 21 C -0.255 4.255 22 O -0.320 6.320 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.374 -6.432 -1.015 7.333 hybrid contribution 0.219 0.675 0.397 0.813 sum -3.155 -5.757 -0.618 6.593 Atomic orbital electron populations 1.21942 0.95737 1.00837 1.02525 1.20548 0.95526 0.94877 1.01489 1.19053 0.98474 0.93679 0.92894 1.20188 1.13165 0.96287 0.95315 1.20751 0.99740 0.94396 0.97033 1.21339 1.03757 1.00165 0.91560 1.17385 0.86551 0.89276 0.93525 1.20376 1.38963 0.92678 0.97416 0.87639 1.25902 0.92432 0.98180 0.97475 1.69800 1.31837 1.11366 1.29806 0.86299 0.78962 0.79617 0.82368 1.17973 1.19959 1.19957 1.18962 1.15232 0.97580 0.89433 1.23152 0.86299 1.01095 0.91539 0.87031 1.98671 1.47063 1.98582 1.69904 1.24353 0.88822 0.75107 0.86889 1.22257 0.95894 1.04744 1.02598 1.90365 1.82205 1.39878 1.19534 0.92333 0.93261 0.92226 0.91896 0.91945 0.89193 0.89250 0.86528 0.91112 0.89148 0.90031 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.40 37.16 0.35 -1.67 16 2 C -0.09 -1.33 5.38 -27.88 -0.15 -1.48 16 3 C -0.04 -0.79 5.12 -104.70 -0.54 -1.33 16 4 C -0.23 -4.64 9.68 -39.29 -0.38 -5.02 16 5 C -0.10 -2.19 10.02 -39.66 -0.40 -2.58 16 6 C -0.15 -3.64 8.62 -38.87 -0.34 -3.97 16 7 C 0.14 3.33 5.33 -106.82 -0.57 2.77 16 8 C -0.46 -11.93 6.97 -37.74 -0.26 -12.20 16 9 H 0.11 2.77 4.80 -52.48 -0.25 2.51 16 10 C 0.08 1.94 5.29 -17.34 -0.09 1.85 16 11 N -0.80 -20.26 11.05 55.55 0.61 -19.64 16 12 Si 0.90 19.95 29.56 -169.99 -5.03 14.92 16 13 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C -0.21 -4.52 4.07 -103.91 -0.42 -4.94 16 17 C 0.02 0.45 2.87 -29.03 -0.08 0.37 16 18 H 0.11 1.87 5.28 -51.93 -0.27 1.60 16 19 Cl -0.17 -3.59 24.72 -51.86 -1.28 -4.87 16 20 C 0.37 7.53 5.33 -29.03 -0.15 7.38 16 21 C -0.20 -3.31 9.46 36.00 0.34 -2.97 16 22 O -0.45 -10.24 16.66 5.99 0.10 -10.14 16 23 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.78 5.09 -51.93 -0.26 0.51 16 26 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 27 H 0.06 0.91 6.26 -51.93 -0.33 0.59 16 28 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.12 2.99 6.54 -52.49 -0.34 2.65 16 31 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 32 H 0.09 1.45 4.93 -51.93 -0.26 1.20 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 288.80 15.07 4.35 4.35 Total: -1.00 -27.32 288.80 -7.74 -35.06 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -3.80 Total: 4.11 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.69 Total: -23.80 kcal Atomic # 7 Polarization: -20.26 SS G_CDS: 0.61 Total: -19.64 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.10 Total: -10.14 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -1.28 Total: -4.87 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.32 -7.74 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.009 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds