Wall clock time and date at job start Mon Mar 30 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47527 * 2 1 4 4 C 1.38648 * 119.87604 * 265.65001 * 3 2 1 5 5 C 1.38609 * 120.50121 * 179.72345 * 4 3 2 6 6 C 1.37642 * 120.24918 * 0.26939 * 5 4 3 7 7 C 1.40699 * 119.74346 * 0.02562 * 6 5 4 8 8 C 1.41392 * 120.24494 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00049 * 214.51191 * 8 7 6 10 10 C 1.39943 * 120.00101 * 34.50935 * 8 7 6 11 11 N 1.30826 * 119.99767 * 6.85345 * 10 8 7 12 12 Si 1.86797 * 120.00040 * 186.84803 * 10 8 7 13 13 H 1.48497 * 109.47357 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47016 * 120.00069 * 12 10 8 15 15 H 1.48502 * 109.47488 * 240.00121 * 12 10 8 16 16 C 1.37596 * 119.87087 * 85.92709 * 3 2 1 17 17 C 1.50701 * 120.13145 * 359.97438 * 16 3 2 18 18 H 1.08991 * 109.47081 * 3.10415 * 17 16 3 19 19 Cl 1.80297 * 109.47148 * 123.11056 * 17 16 3 20 20 C 1.50706 * 109.46644 * 243.10648 * 17 16 3 21 21 C 1.50698 * 120.00026 * 54.62005 * 20 17 16 22 22 O 1.20767 * 119.99755 * 234.60924 * 20 17 16 23 23 H 1.09005 * 109.46961 * 52.93361 * 1 2 3 24 24 H 1.08997 * 109.47370 * 172.93625 * 1 2 3 25 25 H 1.09004 * 109.46747 * 292.93635 * 1 2 3 26 26 H 1.09003 * 109.47247 * 240.00073 * 2 1 3 27 27 H 1.08998 * 109.47280 * 120.00412 * 2 1 3 28 28 H 1.08001 * 119.75276 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.87789 * 180.29959 * 5 4 3 30 30 H 1.08001 * 120.13179 * 180.02562 * 6 5 4 31 31 H 0.97000 * 119.99580 * 179.97438 * 11 10 8 32 32 H 1.08992 * 109.47181 * 354.17592 * 21 20 17 33 33 H 1.09002 * 109.47316 * 114.17927 * 21 20 17 34 34 H 1.08997 * 109.46790 * 234.17945 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3486 2.0415 -1.1988 5 6 2.8064 3.3498 -1.2143 6 6 2.9572 4.0456 -0.0363 7 6 2.6452 3.4238 1.1866 8 6 2.7957 4.1289 2.4029 9 1 3.1067 3.6060 3.2953 10 6 2.5418 5.5042 2.4504 11 7 2.0377 6.1127 1.4077 12 14 2.9225 6.4712 4.0026 13 1 3.4820 5.5572 5.0305 14 1 3.9132 7.5335 3.6935 15 1 1.6756 7.0919 4.5176 16 6 2.1810 2.0952 1.1901 17 6 1.8419 1.4159 2.4919 18 1 1.5503 0.3838 2.2980 19 17 3.2826 1.4401 3.5756 20 6 0.7015 2.1438 3.1560 21 6 -0.5854 2.3721 2.4059 22 8 0.8189 2.5438 4.2895 23 1 -0.3633 0.6194 -0.8201 24 1 -0.3634 -1.0198 -0.1264 25 1 -0.3633 0.4005 0.9465 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2336 1.5030 -2.1278 29 1 3.0452 3.8251 -2.1542 30 1 3.3136 5.0650 -0.0507 31 1 1.8613 7.0660 1.4408 32 1 -0.4695 2.0372 1.3752 33 1 -1.3885 1.8100 2.8825 34 1 -0.8290 3.4345 2.4174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396057915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:17 Heat of formation + Delta-G solvation = -52.115406 kcal Electronic energy + Delta-G solvation = -18777.018368 eV Core-core repulsion = 15892.523681 eV Total energy + Delta-G solvation = -2884.494687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78423 -39.39144 -36.60249 -36.03630 -34.42816 -33.10780 -30.89142 -30.12994 -27.99202 -26.71333 -24.36918 -22.52880 -21.43216 -20.20506 -18.74728 -17.39700 -17.00714 -16.79551 -16.46851 -15.84079 -15.54184 -15.11534 -14.53953 -14.42287 -14.09172 -13.84402 -13.57433 -13.39576 -13.13140 -12.99871 -12.85457 -12.79580 -12.35813 -12.31736 -12.13549 -11.85484 -11.70448 -11.38751 -11.17149 -11.05832 -10.56815 -10.43167 -9.16862 -9.00789 -8.57487 -6.31214 0.74438 1.02231 1.09846 1.31303 1.42733 1.45781 1.67613 2.20834 2.78932 3.22666 3.77773 3.97191 4.09108 4.21142 4.25168 4.35584 4.62809 4.64588 4.68874 4.71871 4.91584 4.97611 5.06043 5.16108 5.23964 5.28099 5.41676 5.55511 5.56133 5.77631 6.03394 6.19410 6.25673 6.42124 6.63218 6.79037 7.01701 7.07281 8.39093 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.010338 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.562662 B = 2707.879701 C = 3371.365211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.038 4.038 4 C -0.225 4.225 5 C -0.104 4.104 6 C -0.181 4.181 7 C 0.111 3.889 8 C -0.490 4.490 9 H 0.094 0.906 10 C 0.043 3.957 11 N -0.829 5.829 12 Si 0.948 3.052 13 H -0.271 1.271 14 H -0.263 1.263 15 H -0.271 1.271 16 C -0.207 4.207 17 C 0.022 3.978 18 H 0.147 0.853 19 Cl -0.184 7.184 20 C 0.370 3.630 21 C -0.192 4.192 22 O -0.482 6.482 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.281 0.719 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 -9.179 -2.766 10.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.244 4.244 5 C -0.122 4.122 6 C -0.201 4.201 7 C 0.109 3.891 8 C -0.521 4.521 9 H 0.112 0.888 10 C -0.170 4.170 11 N -0.457 5.457 12 Si 0.771 3.229 13 H -0.195 1.195 14 H -0.188 1.188 15 H -0.196 1.196 16 C -0.209 4.209 17 C -0.021 4.021 18 H 0.164 0.836 19 Cl -0.157 7.157 20 C 0.246 3.754 21 C -0.249 4.249 22 O -0.357 6.357 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.548 -8.732 -2.147 10.077 hybrid contribution 0.576 1.220 0.598 1.476 sum -3.972 -7.512 -1.549 8.638 Atomic orbital electron populations 1.21936 0.93824 1.02763 1.02375 1.20641 0.97063 0.91714 1.02957 1.19552 0.96719 0.95838 0.91733 1.20618 1.11187 0.95562 0.96983 1.21022 0.99085 0.95252 0.96856 1.21250 1.06146 0.99759 0.92902 1.17619 0.87402 0.90855 0.93245 1.20392 1.40812 0.93301 0.97570 0.88786 1.26390 0.92523 0.98813 0.99313 1.69843 1.33396 1.11632 1.30803 0.85645 0.78946 0.78614 0.79671 1.19505 1.18756 1.19600 1.19151 1.14104 0.96546 0.91090 1.23392 0.85529 1.02847 0.90372 0.83575 1.98669 1.48089 1.98604 1.70388 1.24866 0.89919 0.74046 0.86544 1.22273 0.95273 1.04348 1.02964 1.90356 1.82977 1.41246 1.21096 0.92765 0.90254 0.92282 0.89973 0.91027 0.86046 0.87460 0.89035 0.90845 0.88290 0.86154 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.40 71.98 0.68 -2.56 16 2 C -0.09 -2.23 5.38 29.85 0.16 -2.07 16 3 C -0.04 -1.36 5.12 -19.92 -0.10 -1.47 16 4 C -0.22 -8.35 9.68 22.46 0.22 -8.13 16 5 C -0.10 -4.40 10.02 22.22 0.22 -4.17 16 6 C -0.18 -9.00 8.62 22.73 0.20 -8.80 16 7 C 0.11 5.53 5.33 -21.29 -0.11 5.42 16 8 C -0.49 -25.89 6.97 23.46 0.16 -25.72 16 9 H 0.09 5.08 4.80 -2.91 -0.01 5.07 16 10 C 0.04 2.24 5.29 85.26 0.45 2.70 16 11 N -0.83 -43.35 11.05 21.83 0.24 -43.11 16 12 Si 0.95 42.19 29.56 68.60 2.03 44.22 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 C -0.21 -8.61 4.07 -19.40 -0.08 -8.69 16 17 C 0.02 0.83 2.87 29.10 0.08 0.91 16 18 H 0.15 4.41 5.28 -2.39 -0.01 4.40 16 19 Cl -0.18 -7.76 24.72 -2.72 -0.07 -7.83 16 20 C 0.37 14.49 5.33 29.10 0.16 14.64 16 21 C -0.19 -6.03 9.46 71.24 0.67 -5.36 16 22 O -0.48 -22.05 16.66 -1.47 -0.02 -22.08 16 23 H 0.05 1.22 8.13 -2.38 -0.02 1.20 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.26 5.09 -2.39 -0.01 1.25 16 26 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 27 H 0.07 1.74 6.26 -2.39 -0.01 1.73 16 28 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 30 H 0.09 4.93 6.54 -2.91 -0.02 4.91 16 31 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 32 H 0.10 2.91 4.93 -2.39 -0.01 2.90 16 33 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -60.69 288.80 6.01 -54.68 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.12 Total: 17.42 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 2.71 Total: -43.31 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.02 Total: -22.08 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -7.76 SS G_CDS: -0.07 Total: -7.83 kcal Total: -60.69 6.01 -54.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.567 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds