Wall clock time and date at job start Mon Mar 30 2020 07:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47075 * 2 1 4 4 C 1.36225 * 119.95877 * 94.12489 * 3 2 1 5 5 C 1.40942 * 119.92031 * 179.97438 * 4 3 2 6 6 C 1.40994 * 120.07743 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00034 * 27.05738 * 6 5 4 8 8 C 1.40330 * 119.99859 * 207.05772 * 6 5 4 9 9 N 1.30583 * 120.00337 * 11.92274 * 8 6 5 10 10 Si 1.86801 * 119.99710 * 191.91869 * 8 6 5 11 11 H 1.48496 * 109.47130 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46861 * 120.00502 * 10 8 6 13 13 H 1.48504 * 109.46951 * 239.99697 * 10 8 6 14 14 C 1.40982 * 119.84413 * 359.97438 * 5 4 3 15 15 C 1.36187 * 119.92186 * 359.72271 * 14 5 4 16 16 C 1.40293 * 119.95952 * 274.10161 * 3 2 1 17 17 C 1.46862 * 119.92510 * 0.02562 * 16 3 2 18 18 O 1.21309 * 120.00140 * 6.11436 * 17 16 3 19 19 C 1.50703 * 120.00020 * 186.11351 * 17 16 3 20 20 C 1.53001 * 109.47118 * 180.02562 * 19 17 16 21 21 Cl 1.80299 * 109.47367 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.47780 * 59.99851 * 1 2 3 23 23 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46690 * 299.99508 * 1 2 3 25 25 H 1.09004 * 109.46690 * 240.00492 * 2 1 3 26 26 H 1.08997 * 109.47780 * 120.00149 * 2 1 3 27 27 H 1.08003 * 120.03938 * 359.95621 * 4 3 2 28 28 H 0.97001 * 120.00385 * 180.02562 * 9 8 6 29 29 H 1.08009 * 120.03609 * 179.97438 * 14 5 4 30 30 H 1.08003 * 119.96269 * 180.29787 * 15 14 5 31 31 H 1.08989 * 109.47315 * 60.00213 * 19 17 16 32 32 H 1.09003 * 109.47016 * 299.99962 * 19 17 16 33 33 H 1.08998 * 109.47388 * 300.00657 * 20 19 17 34 34 H 1.09007 * 109.46872 * 59.99816 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3391 2.0340 1.1772 5 6 2.8093 3.3626 1.1762 6 6 3.1274 4.0005 2.3927 7 1 3.4369 3.4141 3.2452 8 6 3.0417 5.3974 2.4958 9 7 2.4520 6.0866 1.5563 10 14 3.7712 6.2711 3.9770 11 1 4.3783 5.2713 4.8919 12 1 4.8143 7.2262 3.5241 13 1 2.7004 7.0104 4.6926 14 6 2.9610 4.0523 -0.0440 15 6 2.6583 3.4311 -1.2176 16 6 2.1839 2.1104 -1.2124 17 6 1.8521 1.4462 -2.4794 18 8 1.3437 0.3447 -2.4720 19 6 2.1430 2.1328 -3.7890 20 6 1.7038 1.2326 -4.9455 21 17 2.0512 2.0544 -6.5123 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.2218 1.5026 2.1101 28 1 2.3931 7.0522 1.6274 29 1 3.3207 5.0707 -0.0484 30 1 2.7788 3.9572 -2.1531 31 1 3.2123 2.3289 -3.8667 32 1 1.5966 3.0749 -3.8345 33 1 2.2497 0.2903 -4.9002 34 1 0.6342 1.0369 -4.8676 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396058317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:12 Heat of formation + Delta-G solvation = -54.692782 kcal Electronic energy + Delta-G solvation = -17580.224659 eV Core-core repulsion = 14695.618208 eV Total energy + Delta-G solvation = -2884.606450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.28129 -37.22177 -35.92498 -34.32329 -33.00898 -31.78067 -30.22996 -28.30942 -26.45055 -24.04847 -22.66218 -21.57074 -19.87970 -18.92897 -17.17591 -16.03197 -15.61017 -15.37785 -14.68834 -14.14346 -14.03164 -13.41746 -13.28163 -12.86428 -12.69859 -12.51669 -12.25352 -11.95472 -11.80559 -11.47266 -11.46021 -11.25248 -11.09082 -10.82241 -10.52513 -10.49686 -10.28532 -10.15270 -10.04527 -9.54294 -9.42566 -8.47766 -7.71273 -7.47878 -7.07050 -4.70292 1.89482 2.33175 2.81003 2.90481 2.95776 2.97886 3.46853 3.68770 4.41753 4.77978 5.03537 5.04028 5.41777 5.53480 5.76937 5.82434 5.89700 6.00874 6.12635 6.22214 6.39169 6.41744 6.54083 6.72441 6.74705 6.78088 6.94321 7.00477 7.14657 7.40022 7.68482 7.79107 7.83782 8.02370 8.34365 8.51147 8.55101 8.68954 9.81962 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.004845 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.940679 B = 5777.716452 C = 6820.259276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C 0.015 3.985 4 C -0.239 4.239 5 C 0.134 3.866 6 C -0.435 4.435 7 H 0.086 0.914 8 C 0.071 3.929 9 N -0.771 5.771 10 Si 0.916 3.084 11 H -0.257 1.257 12 H -0.268 1.268 13 H -0.271 1.271 14 C -0.180 4.180 15 C -0.055 4.055 16 C -0.308 4.308 17 C 0.399 3.601 18 O -0.500 6.500 19 C -0.175 4.175 20 C -0.013 4.013 21 Cl -0.201 7.201 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.287 0.713 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 -2.770 -5.264 5.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C 0.014 3.986 4 C -0.259 4.259 5 C 0.130 3.870 6 C -0.463 4.463 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.395 5.395 10 Si 0.740 3.260 11 H -0.180 1.180 12 H -0.193 1.193 13 H -0.196 1.196 14 C -0.199 4.199 15 C -0.074 4.074 16 C -0.310 4.310 17 C 0.286 3.714 18 O -0.383 6.383 19 C -0.212 4.212 20 C -0.075 4.075 21 Cl -0.175 7.175 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.231 -3.005 -5.446 6.224 hybrid contribution 0.311 0.839 0.596 1.075 sum 0.079 -2.166 -4.850 5.312 Atomic orbital electron populations 1.21505 0.95604 1.00009 1.01274 1.20744 0.95942 0.94226 1.01782 1.19315 0.93122 0.93822 0.92331 1.20623 1.11989 0.97501 0.95763 1.17845 0.85130 0.90782 0.93224 1.19955 1.36749 0.91518 0.98066 0.89635 1.26144 0.92762 0.98014 0.98070 1.69695 1.28631 1.09187 1.31956 0.86108 0.79578 0.79594 0.80730 1.18045 1.19323 1.19557 1.21097 1.06499 1.01040 0.91244 1.20662 0.96383 0.93064 0.97274 1.19190 1.22398 0.97089 0.92365 1.21892 0.74691 0.85469 0.89366 1.90371 1.37492 1.20894 1.89580 1.22312 1.04399 1.00801 0.93732 1.24178 1.04161 0.97144 0.82036 1.98698 1.96544 1.83209 1.39054 0.92587 0.93940 0.93788 0.89322 0.93456 0.88522 0.90155 0.85872 0.88635 0.88197 0.88161 0.88594 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.49 37.16 0.35 -1.94 16 2 C -0.09 -1.75 5.30 -27.88 -0.15 -1.90 16 3 C 0.01 0.32 5.13 -104.57 -0.54 -0.21 16 4 C -0.24 -5.61 9.34 -39.28 -0.37 -5.98 16 5 C 0.13 3.31 5.57 -106.79 -0.59 2.71 16 6 C -0.44 -10.57 9.06 -37.75 -0.34 -10.91 16 7 H 0.09 1.99 7.88 -52.49 -0.41 1.57 16 8 C 0.07 1.62 5.24 -17.30 -0.09 1.53 16 9 N -0.77 -18.09 10.77 55.57 0.60 -17.49 16 10 Si 0.92 16.90 29.58 -169.99 -5.03 11.87 16 11 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 12 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 13 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 14 C -0.18 -4.29 8.61 -39.28 -0.34 -4.63 16 15 C -0.05 -1.18 9.40 -39.53 -0.37 -1.55 16 16 C -0.31 -6.55 5.89 -104.85 -0.62 -7.17 16 17 C 0.40 7.37 7.04 -30.82 -0.22 7.15 16 18 O -0.50 -9.71 11.49 5.53 0.06 -9.64 16 19 C -0.17 -2.55 4.49 -27.88 -0.13 -2.67 16 20 C -0.01 -0.16 5.95 37.16 0.22 0.06 16 21 Cl -0.20 -2.59 29.15 -51.86 -1.51 -4.10 16 22 H 0.06 1.07 7.03 -51.93 -0.37 0.71 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.76 5.65 -51.93 -0.29 1.47 16 26 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 27 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 29 H 0.12 3.00 6.11 -52.48 -0.32 2.68 16 30 H 0.10 1.77 6.95 -52.48 -0.36 1.40 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 1.41 7.89 -51.93 -0.41 1.00 16 33 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -24.98 299.34 -8.79 -33.77 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.25 Total: 6.60 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -3.17 Total: -25.51 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.60 Total: -17.49 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.64 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -1.51 Total: -4.10 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -24.98 -8.79 -33.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396058317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.923 kcal (2) G-P(sol) polarization free energy of solvation -24.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds