Wall clock time and date at job start Mon Mar 30 2020 07:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47075 * 2 1 4 4 C 1.36225 * 119.95877 * 94.12489 * 3 2 1 5 5 C 1.40942 * 119.92031 * 179.97438 * 4 3 2 6 6 C 1.40994 * 120.07743 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00034 * 27.05738 * 6 5 4 8 8 C 1.40330 * 119.99859 * 207.05772 * 6 5 4 9 9 N 1.30583 * 120.00337 * 11.92274 * 8 6 5 10 10 Si 1.86801 * 119.99710 * 191.91869 * 8 6 5 11 11 H 1.48496 * 109.47130 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46861 * 120.00502 * 10 8 6 13 13 H 1.48504 * 109.46951 * 239.99697 * 10 8 6 14 14 C 1.40982 * 119.84413 * 359.97438 * 5 4 3 15 15 C 1.36187 * 119.92186 * 359.72271 * 14 5 4 16 16 C 1.40293 * 119.95952 * 274.10161 * 3 2 1 17 17 C 1.46862 * 119.92510 * 0.02562 * 16 3 2 18 18 O 1.21309 * 120.00140 * 6.11436 * 17 16 3 19 19 C 1.50703 * 120.00020 * 186.11351 * 17 16 3 20 20 C 1.53001 * 109.47118 * 180.02562 * 19 17 16 21 21 Cl 1.80299 * 109.47367 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.47780 * 59.99851 * 1 2 3 23 23 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46690 * 299.99508 * 1 2 3 25 25 H 1.09004 * 109.46690 * 240.00492 * 2 1 3 26 26 H 1.08997 * 109.47780 * 120.00149 * 2 1 3 27 27 H 1.08003 * 120.03938 * 359.95621 * 4 3 2 28 28 H 0.97001 * 120.00385 * 180.02562 * 9 8 6 29 29 H 1.08009 * 120.03609 * 179.97438 * 14 5 4 30 30 H 1.08003 * 119.96269 * 180.29787 * 15 14 5 31 31 H 1.08989 * 109.47315 * 60.00213 * 19 17 16 32 32 H 1.09003 * 109.47016 * 299.99962 * 19 17 16 33 33 H 1.08998 * 109.47388 * 300.00657 * 20 19 17 34 34 H 1.09007 * 109.46872 * 59.99816 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3391 2.0340 1.1772 5 6 2.8093 3.3626 1.1762 6 6 3.1274 4.0005 2.3927 7 1 3.4369 3.4141 3.2452 8 6 3.0417 5.3974 2.4958 9 7 2.4520 6.0866 1.5563 10 14 3.7712 6.2711 3.9770 11 1 4.3783 5.2713 4.8919 12 1 4.8143 7.2262 3.5241 13 1 2.7004 7.0104 4.6926 14 6 2.9610 4.0523 -0.0440 15 6 2.6583 3.4311 -1.2176 16 6 2.1839 2.1104 -1.2124 17 6 1.8521 1.4462 -2.4794 18 8 1.3437 0.3447 -2.4720 19 6 2.1430 2.1328 -3.7890 20 6 1.7038 1.2326 -4.9455 21 17 2.0512 2.0544 -6.5123 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.2218 1.5026 2.1101 28 1 2.3931 7.0522 1.6274 29 1 3.3207 5.0707 -0.0484 30 1 2.7788 3.9572 -2.1531 31 1 3.2123 2.3289 -3.8667 32 1 1.5966 3.0749 -3.8345 33 1 2.2497 0.2903 -4.9002 34 1 0.6342 1.0369 -4.8676 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396058317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:11 Heat of formation + Delta-G solvation = -64.320336 kcal Electronic energy + Delta-G solvation = -17580.642141 eV Core-core repulsion = 14695.618208 eV Total energy + Delta-G solvation = -2885.023932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86717 -38.87273 -36.99161 -35.99945 -34.55658 -33.16932 -31.87369 -29.96930 -28.10090 -25.48739 -24.15346 -23.23563 -21.55741 -20.43007 -18.92439 -17.57824 -17.24804 -16.59439 -16.24316 -15.71031 -15.48889 -14.89249 -14.73627 -14.38277 -14.17221 -13.94021 -13.76491 -13.52379 -13.26178 -13.08632 -12.90157 -12.66927 -12.62844 -12.34291 -12.16195 -11.77031 -11.71635 -11.48959 -11.29814 -11.21863 -11.12689 -10.01414 -9.47755 -9.23875 -8.76148 -6.51586 0.26338 1.18366 1.27912 1.34254 1.38996 1.53506 1.87231 2.15425 2.71745 3.48049 3.63836 3.79079 3.98435 4.18490 4.24016 4.44358 4.52166 4.67911 4.76934 4.79017 4.86814 4.92571 4.97691 5.02081 5.07396 5.15032 5.28086 5.41792 5.45224 5.65675 5.92783 6.01276 6.08905 6.27745 6.57261 6.77312 6.90985 6.96866 8.16302 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.004845 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.940679 B = 5777.716452 C = 6820.259276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C 0.003 3.997 4 C -0.259 4.259 5 C 0.106 3.894 6 C -0.473 4.473 7 H 0.082 0.918 8 C 0.036 3.964 9 N -0.802 5.802 10 Si 0.988 3.012 11 H -0.257 1.257 12 H -0.260 1.260 13 H -0.264 1.264 14 C -0.204 4.204 15 C -0.049 4.049 16 C -0.317 4.317 17 C 0.405 3.595 18 O -0.504 6.504 19 C -0.166 4.166 20 C -0.007 4.007 21 Cl -0.196 7.196 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.296 0.704 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -2.959 -6.282 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.124 4.124 3 C 0.003 3.997 4 C -0.279 4.279 5 C 0.103 3.897 6 C -0.500 4.500 7 H 0.101 0.899 8 C -0.182 4.182 9 N -0.426 5.426 10 Si 0.808 3.192 11 H -0.181 1.181 12 H -0.184 1.184 13 H -0.189 1.189 14 C -0.223 4.223 15 C -0.067 4.067 16 C -0.320 4.320 17 C 0.291 3.709 18 O -0.387 6.387 19 C -0.204 4.204 20 C -0.069 4.069 21 Cl -0.169 7.169 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.277 -3.210 -6.481 7.238 hybrid contribution 0.270 0.784 0.767 1.129 sum -0.007 -2.426 -5.715 6.208 Atomic orbital electron populations 1.21447 0.94459 1.01450 1.00401 1.20753 0.96835 0.92601 1.02182 1.19707 0.92566 0.95189 0.92287 1.20746 1.13067 0.97561 0.96509 1.18180 0.85858 0.91611 0.94012 1.20166 1.38888 0.92833 0.98158 0.89940 1.26928 0.92478 0.97991 1.00829 1.69725 1.29336 1.09899 1.33676 0.85057 0.78859 0.78242 0.77054 1.18071 1.18431 1.18874 1.21105 1.08261 1.00935 0.92038 1.20943 0.94881 0.93193 0.97716 1.19659 1.21382 0.97205 0.93719 1.22055 0.73794 0.85177 0.89905 1.90368 1.37259 1.21188 1.89877 1.22223 1.05411 1.00947 0.91801 1.24078 1.04410 0.96845 0.81592 1.98705 1.96538 1.83170 1.38531 0.93816 0.91347 0.94237 0.89402 0.92517 0.88616 0.89290 0.86990 0.85615 0.86889 0.87131 0.88091 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 9.49 71.98 0.68 -3.51 16 2 C -0.09 -3.29 5.30 29.85 0.16 -3.14 16 3 C 0.00 0.13 5.13 -19.83 -0.10 0.03 16 4 C -0.26 -12.51 9.34 22.46 0.21 -12.30 16 5 C 0.11 5.47 5.57 -21.27 -0.12 5.35 16 6 C -0.47 -23.85 9.06 23.45 0.21 -23.63 16 7 H 0.08 4.01 7.88 -2.91 -0.02 3.99 16 8 C 0.04 1.67 5.24 85.39 0.45 2.12 16 9 N -0.80 -38.41 10.77 21.89 0.24 -38.17 16 10 Si 0.99 34.85 29.58 68.60 2.03 36.88 16 11 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 12 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 13 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 14 C -0.20 -9.98 8.61 22.46 0.19 -9.78 16 15 C -0.05 -2.06 9.40 22.30 0.21 -1.85 16 16 C -0.32 -13.24 5.89 -20.01 -0.12 -13.36 16 17 C 0.40 14.10 7.04 27.95 0.20 14.30 16 18 O -0.50 -18.48 11.49 -3.12 -0.04 -18.52 16 19 C -0.17 -4.37 4.49 29.85 0.13 -4.24 16 20 C -0.01 -0.15 5.95 71.98 0.43 0.28 16 21 Cl -0.20 -4.51 29.15 -2.72 -0.08 -4.59 16 22 H 0.04 1.61 7.03 -2.39 -0.02 1.59 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.09 3.35 5.65 -2.38 -0.01 3.34 16 26 H 0.06 2.01 8.05 -2.39 -0.02 1.99 16 27 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 29 H 0.11 5.64 6.11 -2.91 -0.02 5.62 16 30 H 0.13 4.42 6.95 -2.91 -0.02 4.40 16 31 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.11 2.76 7.89 -2.39 -0.02 2.74 16 33 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 34 H 0.10 2.27 8.10 -2.38 -0.02 2.25 16 Total: -1.00 -53.97 299.34 5.79 -48.19 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.10 Total: 25.95 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 2.54 Total: -49.74 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.24 Total: -38.17 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.04 Total: -18.52 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 17 Polarization: -4.51 SS G_CDS: -0.08 Total: -4.59 kcal Total: -53.97 5.79 -48.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396058317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.134 kcal (2) G-P(sol) polarization free energy of solvation -53.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds