Wall clock time and date at job start Mon Mar 30 2020 07:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47194 * 2 1 4 4 C 1.37796 * 119.95114 * 265.23949 * 3 2 1 5 5 C 1.38254 * 120.44532 * 180.27497 * 4 3 2 6 6 C 1.40181 * 120.32651 * 359.74218 * 5 4 3 7 7 C 1.47224 * 120.04899 * 180.02562 * 6 5 4 8 8 O 1.21243 * 119.99621 * 179.97438 * 7 6 5 9 9 C 1.50693 * 120.00050 * 359.97438 * 7 6 5 10 10 H 1.08995 * 109.47563 * 34.99321 * 9 7 6 11 11 C 1.53001 * 109.47096 * 274.99450 * 9 7 6 12 12 Cl 1.80306 * 109.47174 * 154.99684 * 9 7 6 13 13 C 1.39282 * 119.89559 * 359.97438 * 6 5 4 14 14 C 1.40461 * 119.56516 * 0.02562 * 13 6 5 15 15 C 1.41448 * 120.16779 * 179.97438 * 14 13 6 16 16 H 1.07997 * 120.00292 * 149.49961 * 15 14 13 17 17 C 1.39940 * 119.99317 * 329.77013 * 15 14 13 18 18 N 1.30834 * 119.99395 * 162.04498 * 17 15 14 19 19 Si 1.86795 * 120.00375 * 342.04791 * 17 15 14 20 20 H 1.48498 * 109.47002 * 95.39301 * 19 17 15 21 21 H 1.48504 * 109.46998 * 215.39207 * 19 17 15 22 22 H 1.48500 * 109.46816 * 335.38841 * 19 17 15 23 23 H 1.08996 * 109.46911 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46886 * 299.99665 * 1 2 3 25 25 H 1.08992 * 109.47470 * 59.99835 * 1 2 3 26 26 H 1.09002 * 109.47218 * 239.99972 * 2 1 3 27 27 H 1.08999 * 109.47133 * 120.00000 * 2 1 3 28 28 H 1.08000 * 119.78101 * 0.02562 * 4 3 2 29 29 H 1.07990 * 119.83802 * 179.71468 * 5 4 3 30 30 H 1.08997 * 109.47216 * 59.99983 * 11 9 7 31 31 H 1.08997 * 109.47581 * 180.02562 * 11 9 7 32 32 H 1.09007 * 109.47179 * 300.00371 * 11 9 7 33 33 H 1.07999 * 120.21854 * 180.02562 * 13 6 5 34 34 H 0.96999 * 119.99953 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3551 2.0364 -1.1898 5 6 2.8223 3.3376 -1.2012 6 6 2.9679 4.0479 -0.0015 7 6 3.4654 5.4334 -0.0208 8 8 3.5905 6.0470 1.0173 9 6 3.8190 6.0888 -1.3309 10 1 3.1370 5.7413 -2.1068 11 6 5.2548 5.7234 -1.7128 12 17 3.6784 7.8787 -1.1647 13 6 2.6402 3.4412 1.2086 14 6 2.1660 2.1191 1.2150 15 6 1.8300 1.4903 2.4367 16 1 1.0530 0.7406 2.4625 17 6 2.5005 1.8439 3.6131 18 7 1.9813 1.5462 4.7765 19 14 4.1364 2.7409 3.5222 20 1 3.9067 4.2030 3.6437 21 1 5.0137 2.2839 4.6299 22 1 4.7894 2.4488 2.2209 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2463 1.4975 -2.1194 29 1 3.0767 3.8089 -2.1389 30 1 5.3399 4.6414 -1.8132 31 1 5.5108 6.1978 -2.6601 32 1 5.9369 6.0709 -0.9368 33 1 2.7500 3.9837 2.1360 34 1 2.4462 1.7909 5.5919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396058519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:38 Heat of formation + Delta-G solvation = -49.485631 kcal Electronic energy + Delta-G solvation = -17922.880618 eV Core-core repulsion = 15038.499967 eV Total energy + Delta-G solvation = -2884.380651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.46938 -37.77243 -35.88457 -33.88921 -33.34315 -32.35029 -30.52343 -28.92955 -25.52902 -25.00696 -22.88288 -21.52000 -20.74242 -18.76070 -17.48625 -16.53884 -15.58238 -15.02092 -14.75577 -14.58292 -14.20665 -13.94168 -13.18074 -12.84643 -12.79519 -12.68410 -12.46247 -12.26550 -11.95156 -11.80792 -11.65907 -11.22859 -10.86902 -10.75198 -10.64779 -10.47344 -10.38708 -10.27653 -9.93790 -9.74932 -9.24754 -9.09582 -7.87284 -7.75322 -7.04926 -4.60927 1.40368 2.16751 2.48445 2.95949 3.16564 3.21548 3.27063 3.92053 4.15595 4.34489 4.84173 4.95137 5.19099 5.44643 5.57060 5.60147 5.70141 5.80560 5.89748 5.98109 6.05572 6.15465 6.34216 6.46724 6.52359 6.63753 6.78873 6.88066 6.95160 7.13381 7.30721 7.41533 7.64702 7.88331 7.94182 8.20544 8.45463 8.66117 9.95997 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.007308 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.424463 B = 3830.402262 C = 4872.834799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.202 4.202 6 C -0.136 4.136 7 C 0.390 3.610 8 O -0.441 6.441 9 C -0.048 4.048 10 H 0.126 0.874 11 C -0.150 4.150 12 Cl -0.165 7.165 13 C -0.164 4.164 14 C 0.081 3.919 15 C -0.440 4.440 16 H 0.100 0.900 17 C 0.086 3.914 18 N -0.800 5.800 19 Si 0.895 3.105 20 H -0.259 1.259 21 H -0.287 1.287 22 H -0.246 1.246 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 2.444 -10.705 11.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.149 4.149 4 C -0.108 4.108 5 C -0.222 4.222 6 C -0.137 4.137 7 C 0.267 3.733 8 O -0.316 6.316 9 C -0.092 4.092 10 H 0.144 0.856 11 C -0.207 4.207 12 Cl -0.138 7.138 13 C -0.183 4.183 14 C 0.078 3.922 15 C -0.468 4.468 16 H 0.117 0.883 17 C -0.134 4.134 18 N -0.423 5.423 19 Si 0.720 3.280 20 H -0.184 1.184 21 H -0.214 1.214 22 H -0.169 1.169 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.367 2.869 -9.829 10.778 hybrid contribution 0.620 0.524 0.040 0.813 sum 3.986 3.393 -9.789 11.100 Atomic orbital electron populations 1.21716 0.96250 1.00148 1.01875 1.20235 0.95029 0.93804 1.01254 1.19963 1.06496 0.95577 0.92837 1.20460 0.99445 0.94409 0.96457 1.20546 1.10508 0.96074 0.95039 1.19717 1.05511 0.93145 0.95341 1.22581 0.74030 0.87898 0.88781 1.90525 1.41124 1.64773 1.35135 1.24658 1.02149 0.81400 1.01009 0.85623 1.22008 0.92373 1.03453 1.02907 1.98717 1.98737 1.17727 1.98643 1.21410 1.05728 0.95325 0.95880 1.17550 0.90790 0.90471 0.93344 1.19526 1.17967 1.19825 0.89440 0.88254 1.26145 0.99482 0.93094 0.94659 1.69674 1.37175 1.36392 0.99058 0.86540 0.81543 0.80464 0.79409 1.18449 1.21400 1.16882 0.93839 0.92047 0.93664 0.93254 0.90855 0.88079 0.88006 0.89631 0.90511 0.91093 0.86839 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.79 37.16 0.36 -2.02 16 2 C -0.07 -1.20 5.41 -27.88 -0.15 -1.35 16 3 C -0.15 -3.06 5.20 -103.83 -0.54 -3.60 16 4 C -0.09 -1.65 9.63 -39.74 -0.38 -2.04 16 5 C -0.20 -3.65 9.37 -38.85 -0.36 -4.01 16 6 C -0.14 -2.82 5.86 -105.13 -0.62 -3.44 16 7 C 0.39 7.51 6.28 -30.66 -0.19 7.32 16 8 O -0.44 -9.90 16.25 5.59 0.09 -9.81 16 9 C -0.05 -0.69 3.03 -27.89 -0.08 -0.78 16 10 H 0.13 1.55 6.73 -51.93 -0.35 1.20 16 11 C -0.15 -1.79 9.30 37.16 0.35 -1.44 16 12 Cl -0.16 -2.50 28.00 -51.86 -1.45 -3.95 16 13 C -0.16 -3.91 6.71 -38.36 -0.26 -4.17 16 14 C 0.08 1.94 5.09 -106.88 -0.54 1.39 16 15 C -0.44 -11.15 8.50 -37.72 -0.32 -11.47 16 16 H 0.10 2.58 6.33 -52.49 -0.33 2.25 16 17 C 0.09 2.21 5.40 -17.34 -0.09 2.11 16 18 N -0.80 -20.76 13.93 55.55 0.77 -19.99 16 19 Si 0.89 20.87 24.52 -169.99 -4.17 16.70 16 20 H -0.26 -6.25 6.72 56.52 0.38 -5.87 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.25 -5.78 6.86 56.52 0.39 -5.39 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.15 7.19 -51.93 -0.37 0.77 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 27 H 0.07 1.42 7.12 -51.93 -0.37 1.05 16 28 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.10 1.46 6.45 -52.49 -0.34 1.13 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 33 H 0.11 2.89 4.35 -52.49 -0.23 2.66 16 34 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -27.24 296.25 -7.25 -34.49 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.12 Total: 1.60 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.84 Total: -23.49 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.77 Total: -19.99 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.17 Total: 16.70 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -1.45 Total: -3.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.24 -7.25 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396058519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds