Wall clock time and date at job start Mon Mar 30 2020 07:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47194 * 2 1 4 4 C 1.37796 * 119.95114 * 265.23949 * 3 2 1 5 5 C 1.38254 * 120.44532 * 180.27497 * 4 3 2 6 6 C 1.40181 * 120.32651 * 359.74218 * 5 4 3 7 7 C 1.47224 * 120.04899 * 180.02562 * 6 5 4 8 8 O 1.21243 * 119.99621 * 179.97438 * 7 6 5 9 9 C 1.50693 * 120.00050 * 359.97438 * 7 6 5 10 10 H 1.08995 * 109.47563 * 34.99321 * 9 7 6 11 11 C 1.53001 * 109.47096 * 274.99450 * 9 7 6 12 12 Cl 1.80306 * 109.47174 * 154.99684 * 9 7 6 13 13 C 1.39282 * 119.89559 * 359.97438 * 6 5 4 14 14 C 1.40461 * 119.56516 * 0.02562 * 13 6 5 15 15 C 1.41448 * 120.16779 * 179.97438 * 14 13 6 16 16 H 1.07997 * 120.00292 * 149.49961 * 15 14 13 17 17 C 1.39940 * 119.99317 * 329.77013 * 15 14 13 18 18 N 1.30834 * 119.99395 * 162.04498 * 17 15 14 19 19 Si 1.86795 * 120.00375 * 342.04791 * 17 15 14 20 20 H 1.48498 * 109.47002 * 95.39301 * 19 17 15 21 21 H 1.48504 * 109.46998 * 215.39207 * 19 17 15 22 22 H 1.48500 * 109.46816 * 335.38841 * 19 17 15 23 23 H 1.08996 * 109.46911 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46886 * 299.99665 * 1 2 3 25 25 H 1.08992 * 109.47470 * 59.99835 * 1 2 3 26 26 H 1.09002 * 109.47218 * 239.99972 * 2 1 3 27 27 H 1.08999 * 109.47133 * 120.00000 * 2 1 3 28 28 H 1.08000 * 119.78101 * 0.02562 * 4 3 2 29 29 H 1.07990 * 119.83802 * 179.71468 * 5 4 3 30 30 H 1.08997 * 109.47216 * 59.99983 * 11 9 7 31 31 H 1.08997 * 109.47581 * 180.02562 * 11 9 7 32 32 H 1.09007 * 109.47179 * 300.00371 * 11 9 7 33 33 H 1.07999 * 120.21854 * 180.02562 * 13 6 5 34 34 H 0.96999 * 119.99953 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3551 2.0364 -1.1898 5 6 2.8223 3.3376 -1.2012 6 6 2.9679 4.0479 -0.0015 7 6 3.4654 5.4334 -0.0208 8 8 3.5905 6.0470 1.0173 9 6 3.8190 6.0888 -1.3309 10 1 3.1370 5.7413 -2.1068 11 6 5.2548 5.7234 -1.7128 12 17 3.6784 7.8787 -1.1647 13 6 2.6402 3.4412 1.2086 14 6 2.1660 2.1191 1.2150 15 6 1.8300 1.4903 2.4367 16 1 1.0530 0.7406 2.4625 17 6 2.5005 1.8439 3.6131 18 7 1.9813 1.5462 4.7765 19 14 4.1364 2.7409 3.5222 20 1 3.9067 4.2030 3.6437 21 1 5.0137 2.2839 4.6299 22 1 4.7894 2.4488 2.2209 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2463 1.4975 -2.1194 29 1 3.0767 3.8089 -2.1389 30 1 5.3399 4.6414 -1.8132 31 1 5.5108 6.1978 -2.6601 32 1 5.9369 6.0709 -0.9368 33 1 2.7500 3.9837 2.1360 34 1 2.4462 1.7909 5.5919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396058519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:38 Heat of formation + Delta-G solvation = -64.148664 kcal Electronic energy + Delta-G solvation = -17923.516455 eV Core-core repulsion = 15038.499967 eV Total energy + Delta-G solvation = -2885.016488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03240 -39.39817 -37.08072 -35.63277 -34.89747 -33.59018 -32.20431 -30.43078 -27.22174 -26.37107 -24.26887 -23.21419 -22.17936 -20.36018 -19.17481 -18.10615 -17.06986 -16.69059 -16.34155 -16.04885 -15.72735 -15.32722 -14.77500 -14.63119 -14.23987 -14.12157 -13.81355 -13.66710 -13.38499 -13.25522 -12.87186 -12.73186 -12.66394 -12.31055 -12.09980 -11.95491 -11.87505 -11.54984 -11.49702 -11.44416 -11.06484 -10.59340 -9.54579 -9.42628 -8.93336 -6.50005 -0.17270 0.77994 0.96382 1.20278 1.24300 1.34568 1.58513 2.03153 2.57330 2.78989 3.41069 3.78322 3.89267 4.06167 4.20768 4.29911 4.42808 4.57656 4.67127 4.73115 4.75274 4.84553 4.86687 5.02321 5.10839 5.16073 5.20931 5.31200 5.44081 5.56464 5.66083 5.75548 5.96479 6.20935 6.34081 6.43833 6.67491 6.82316 8.14035 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.007308 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.424463 B = 3830.402262 C = 4872.834799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.157 4.157 7 C 0.387 3.613 8 O -0.485 6.485 9 C -0.040 4.040 10 H 0.160 0.840 11 C -0.149 4.149 12 Cl -0.172 7.172 13 C -0.196 4.196 14 C 0.059 3.941 15 C -0.468 4.468 16 H 0.078 0.922 17 C 0.056 3.944 18 N -0.846 5.846 19 Si 0.940 3.060 20 H -0.282 1.282 21 H -0.275 1.275 22 H -0.250 1.250 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 2.395 -15.715 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.176 4.176 6 C -0.158 4.158 7 C 0.267 3.733 8 O -0.362 6.362 9 C -0.084 4.084 10 H 0.178 0.822 11 C -0.206 4.206 12 Cl -0.145 7.145 13 C -0.216 4.216 14 C 0.056 3.944 15 C -0.498 4.498 16 H 0.096 0.904 17 C -0.159 4.159 18 N -0.473 5.473 19 Si 0.766 3.234 20 H -0.209 1.209 21 H -0.201 1.201 22 H -0.173 1.173 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.208 2.807 -14.860 15.697 hybrid contribution 0.336 0.591 1.236 1.411 sum 4.544 3.398 -13.623 14.758 Atomic orbital electron populations 1.21650 0.95171 1.01537 1.01029 1.20319 0.95925 0.92332 1.01962 1.20465 1.04234 0.96750 0.92665 1.21018 0.98058 0.94779 0.97245 1.21238 1.05147 0.95403 0.95852 1.20089 1.05841 0.94542 0.95296 1.23133 0.72549 0.87307 0.90312 1.90523 1.42859 1.65530 1.37301 1.24743 1.04676 0.80647 0.98294 0.82239 1.22098 0.89951 1.04454 1.04055 1.98727 1.98818 1.18353 1.98638 1.21349 1.08195 0.95651 0.96406 1.17723 0.91772 0.90784 0.94104 1.19478 1.18879 1.20759 0.90713 0.90412 1.26540 1.00999 0.93686 0.94685 1.69706 1.38478 1.39693 0.99447 0.85851 0.80056 0.78267 0.79199 1.20935 1.20144 1.17345 0.91450 0.95343 0.91930 0.89540 0.93082 0.83196 0.82540 0.88457 0.87162 0.92461 0.89894 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.79 71.98 0.70 -3.61 16 2 C -0.07 -2.32 5.41 29.85 0.16 -2.16 16 3 C -0.14 -5.48 5.20 -19.35 -0.10 -5.58 16 4 C -0.09 -2.91 9.63 22.17 0.21 -2.70 16 5 C -0.16 -4.77 9.37 22.75 0.21 -4.55 16 6 C -0.16 -6.15 5.86 -20.19 -0.12 -6.27 16 7 C 0.39 14.19 6.28 28.05 0.18 14.36 16 8 O -0.49 -22.00 16.25 -2.92 -0.05 -22.04 16 9 C -0.04 -0.98 3.03 29.85 0.09 -0.89 16 10 H 0.16 2.86 6.73 -2.39 -0.02 2.85 16 11 C -0.15 -2.82 9.30 71.98 0.67 -2.15 16 12 Cl -0.17 -4.77 28.00 -2.72 -0.08 -4.85 16 13 C -0.20 -9.52 6.71 23.06 0.15 -9.37 16 14 C 0.06 2.83 5.09 -21.33 -0.11 2.72 16 15 C -0.47 -25.22 8.50 23.47 0.20 -25.02 16 16 H 0.08 4.36 6.33 -2.91 -0.02 4.35 16 17 C 0.06 3.03 5.40 85.25 0.46 3.49 16 18 N -0.85 -47.23 13.93 21.83 0.30 -46.93 16 19 Si 0.94 45.88 24.52 68.60 1.68 47.56 16 20 H -0.28 -14.60 6.72 99.48 0.67 -13.93 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.25 -12.05 6.86 99.48 0.68 -11.37 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.03 1.06 7.19 -2.39 -0.02 1.05 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 2.31 8.05 -2.39 -0.02 2.29 16 27 H 0.05 1.98 7.12 -2.39 -0.02 1.96 16 28 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.16 3.10 6.45 -2.92 -0.02 3.08 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 4.49 4.35 -2.91 -0.01 4.47 16 34 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 Total: -1.00 -65.47 296.25 5.63 -59.84 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.05 Total: 8.14 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 2.72 Total: -41.72 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.30 Total: -46.93 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.68 Total: 47.56 kcal Atomic # 17 Polarization: -4.77 SS G_CDS: -0.08 Total: -4.85 kcal Total: -65.47 5.63 -59.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396058519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.310 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds