Wall clock time and date at job start Mon Mar 30 2020 07:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 C 1.38722 * 119.34685 * 270.02149 * 3 2 1 5 5 C 1.37501 * 121.22953 * 179.97438 * 4 3 2 6 6 C 1.40834 * 119.86097 * 0.02562 * 5 4 3 7 7 C 1.40731 * 120.61666 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99308 * 153.71422 * 7 6 5 9 9 C 1.40393 * 120.00431 * 333.71671 * 7 6 5 10 10 N 1.30566 * 119.99713 * 346.26639 * 9 7 6 11 11 Si 1.86795 * 119.99854 * 166.26166 * 9 7 6 12 12 H 1.48499 * 109.46761 * 90.00451 * 11 9 7 13 13 H 1.48505 * 109.46798 * 209.99897 * 11 9 7 14 14 H 1.48496 * 109.47405 * 329.99737 * 11 9 7 15 15 C 1.46620 * 118.76181 * 359.97438 * 6 5 4 16 16 C 1.46599 * 120.59041 * 180.02562 * 15 6 5 17 17 O 1.21341 * 120.00429 * 102.83803 * 16 15 6 18 18 C 1.50704 * 119.99488 * 282.83229 * 16 15 6 19 19 H 1.09004 * 109.46896 * 153.91310 * 18 16 15 20 20 C 1.52991 * 109.47220 * 273.91464 * 18 16 15 21 21 Cl 1.80297 * 109.47212 * 33.91679 * 18 16 15 22 22 C 1.38010 * 119.34616 * 89.99943 * 3 2 1 23 23 H 1.08999 * 109.46815 * 300.00225 * 1 2 3 24 24 H 1.09000 * 109.46821 * 59.99620 * 1 2 3 25 25 H 1.08991 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46960 * 240.00288 * 2 1 3 27 27 H 1.08993 * 109.47149 * 120.00205 * 2 1 3 28 28 H 1.08001 * 119.38338 * 0.02562 * 4 3 2 29 29 H 1.07998 * 120.07087 * 180.02562 * 5 4 3 30 30 H 0.96998 * 119.99676 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.47491 * 60.00143 * 20 18 16 32 32 H 1.09006 * 109.47341 * 180.02562 * 20 18 16 33 33 H 1.09001 * 109.47418 * 299.99686 * 20 18 16 34 34 H 1.08001 * 119.99357 * 359.72447 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2585 2.0620 -1.2092 5 6 2.7161 3.3578 -1.2544 6 6 2.9635 4.0563 -0.0567 7 6 3.4325 5.3828 -0.0844 8 1 3.2276 6.0453 0.7437 9 6 4.1665 5.8451 -1.1883 10 7 4.6445 4.9952 -2.0566 11 14 4.4591 7.6760 -1.4148 12 1 5.7182 8.0644 -0.7298 13 1 4.5683 7.9843 -2.8634 14 1 3.3237 8.4347 -0.8315 15 6 2.7233 3.3755 1.2195 16 6 2.9669 4.0649 2.4902 17 8 2.0343 4.5005 3.1327 18 6 4.3758 4.2323 2.9984 19 1 4.4269 5.1082 3.6453 20 6 4.7833 2.9886 3.7907 21 17 5.4963 4.4497 1.6028 22 6 2.2578 2.0585 1.2030 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0710 1.5337 -2.1323 29 1 2.8854 3.8391 -2.2063 30 1 5.1519 5.3145 -2.8190 31 1 4.7322 2.1128 3.1440 32 1 5.8022 3.1099 4.1588 33 1 4.1059 2.8572 4.6345 34 1 2.0700 1.5408 2.1320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396058921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:03 Heat of formation + Delta-G solvation = -46.411993 kcal Electronic energy + Delta-G solvation = -18205.907068 eV Core-core repulsion = 15321.659700 eV Total energy + Delta-G solvation = -2884.247368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -38.89411 -37.12810 -35.26186 -34.38106 -32.40929 -31.85505 -29.58817 -28.95801 -25.62186 -24.53661 -22.32840 -21.75941 -20.23168 -18.33146 -17.29284 -15.69592 -15.38785 -15.28798 -14.46273 -14.23069 -13.84283 -13.63249 -13.10849 -12.65570 -12.58036 -12.28456 -12.08568 -11.89797 -11.81182 -11.39420 -11.30557 -11.17037 -10.97634 -10.63971 -10.43542 -10.26986 -10.14152 -9.79957 -9.63140 -9.59135 -9.17170 -8.57581 -7.49886 -7.22991 -6.86900 -4.40434 2.35321 2.65176 2.88457 3.01453 3.06223 3.16274 3.18071 3.85210 4.51615 4.73265 5.21865 5.25629 5.48704 5.67153 5.70595 5.75712 5.90154 6.06814 6.13855 6.20821 6.31335 6.37691 6.43862 6.51132 6.66705 6.76388 6.92839 7.14886 7.23220 7.46454 7.74840 7.89591 8.06005 8.10621 8.19755 8.51242 8.71412 8.84688 10.03644 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.009399 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.072425 B = 2978.452615 C = 4043.306068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.219 4.219 4 C -0.080 4.080 5 C -0.168 4.168 6 C 0.157 3.843 7 C -0.426 4.426 8 H 0.075 0.925 9 C 0.083 3.917 10 N -0.775 5.775 11 Si 0.899 3.101 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.258 1.258 15 C -0.290 4.290 16 C 0.447 3.553 17 O -0.473 6.473 18 C -0.062 4.062 19 H 0.106 0.894 20 C -0.146 4.146 21 Cl -0.118 7.118 22 C -0.041 4.041 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.283 0.717 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -3.085 3.778 5.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.220 4.220 4 C -0.098 4.098 5 C -0.187 4.187 6 C 0.154 3.846 7 C -0.454 4.454 8 H 0.093 0.907 9 C -0.137 4.137 10 N -0.398 5.398 11 Si 0.723 3.277 12 H -0.191 1.191 13 H -0.199 1.199 14 H -0.182 1.182 15 C -0.292 4.292 16 C 0.324 3.676 17 O -0.348 6.348 18 C -0.107 4.107 19 H 0.124 0.876 20 C -0.203 4.203 21 Cl -0.091 7.091 22 C -0.060 4.060 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.027 -2.847 3.789 4.849 hybrid contribution 0.437 0.849 -0.242 0.985 sum 1.464 -1.998 3.548 4.327 Atomic orbital electron populations 1.21782 0.96782 0.99714 1.01772 1.20174 0.94566 0.94650 1.00341 1.18803 1.14038 0.96126 0.93040 1.20538 0.98778 0.95256 0.95249 1.21278 1.04372 0.94495 0.98534 1.18260 0.86236 0.91701 0.88409 1.19438 1.27426 0.96158 1.02423 0.90723 1.25863 0.93606 0.99770 0.94482 1.69682 1.23724 1.36274 1.10154 0.86415 0.80108 0.82695 0.78454 1.19090 1.19908 1.18216 1.20626 1.19743 0.96217 0.92642 1.22170 0.87929 0.73001 0.84476 1.90477 1.46203 1.40383 1.57778 1.24560 0.92760 1.01681 0.91731 0.87638 1.21936 1.02124 0.96641 0.99646 1.98791 1.65345 1.97741 1.47218 1.20180 0.97404 0.92746 0.95658 0.93140 0.93055 0.94104 0.92969 0.93192 0.89589 0.85937 0.90587 0.90591 0.90955 0.91392 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.90 37.16 0.37 -1.86 16 2 C -0.06 -1.03 6.03 -27.88 -0.17 -1.20 16 3 C -0.22 -4.63 5.14 -104.53 -0.54 -5.17 16 4 C -0.08 -1.78 9.59 -39.67 -0.38 -2.16 16 5 C -0.17 -4.12 8.69 -38.87 -0.34 -4.46 16 6 C 0.16 3.93 5.09 -104.59 -0.53 3.40 16 7 C -0.43 -10.55 5.86 -37.83 -0.22 -10.77 16 8 H 0.07 1.88 7.40 -52.49 -0.39 1.49 16 9 C 0.08 1.95 5.23 -17.28 -0.09 1.86 16 10 N -0.77 -18.51 10.85 55.57 0.60 -17.91 16 11 Si 0.90 18.09 29.58 -169.99 -5.03 13.06 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 14 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 15 C -0.29 -6.82 5.13 -102.60 -0.53 -7.34 16 16 C 0.45 9.77 4.81 -30.94 -0.15 9.62 16 17 O -0.47 -11.20 17.86 5.50 0.10 -11.10 16 18 C -0.06 -1.13 3.75 -27.89 -0.10 -1.24 16 19 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 20 C -0.15 -2.14 9.30 37.15 0.35 -1.79 16 21 Cl -0.12 -2.39 24.39 -51.86 -1.26 -3.66 16 22 C -0.04 -0.91 9.41 -39.12 -0.37 -1.28 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 30 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -26.46 303.03 -8.22 -34.67 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.49 Total: 2.75 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.70 Total: -22.39 kcal Atomic # 7 Polarization: -18.51 SS G_CDS: 0.60 Total: -17.91 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.10 Total: -11.10 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -1.26 Total: -3.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.46 -8.22 -34.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396058921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.738 kcal (2) G-P(sol) polarization free energy of solvation -26.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds