Wall clock time and date at job start Mon Mar 30 2020 07:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 C 1.38722 * 119.34685 * 270.02149 * 3 2 1 5 5 C 1.37501 * 121.22953 * 179.97438 * 4 3 2 6 6 C 1.40834 * 119.86097 * 0.02562 * 5 4 3 7 7 C 1.40731 * 120.61666 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99308 * 153.71422 * 7 6 5 9 9 C 1.40393 * 120.00431 * 333.71671 * 7 6 5 10 10 N 1.30566 * 119.99713 * 346.26639 * 9 7 6 11 11 Si 1.86795 * 119.99854 * 166.26166 * 9 7 6 12 12 H 1.48499 * 109.46761 * 90.00451 * 11 9 7 13 13 H 1.48505 * 109.46798 * 209.99897 * 11 9 7 14 14 H 1.48496 * 109.47405 * 329.99737 * 11 9 7 15 15 C 1.46620 * 118.76181 * 359.97438 * 6 5 4 16 16 C 1.46599 * 120.59041 * 180.02562 * 15 6 5 17 17 O 1.21341 * 120.00429 * 102.83803 * 16 15 6 18 18 C 1.50704 * 119.99488 * 282.83229 * 16 15 6 19 19 H 1.09004 * 109.46896 * 153.91310 * 18 16 15 20 20 C 1.52991 * 109.47220 * 273.91464 * 18 16 15 21 21 Cl 1.80297 * 109.47212 * 33.91679 * 18 16 15 22 22 C 1.38010 * 119.34616 * 89.99943 * 3 2 1 23 23 H 1.08999 * 109.46815 * 300.00225 * 1 2 3 24 24 H 1.09000 * 109.46821 * 59.99620 * 1 2 3 25 25 H 1.08991 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46960 * 240.00288 * 2 1 3 27 27 H 1.08993 * 109.47149 * 120.00205 * 2 1 3 28 28 H 1.08001 * 119.38338 * 0.02562 * 4 3 2 29 29 H 1.07998 * 120.07087 * 180.02562 * 5 4 3 30 30 H 0.96998 * 119.99676 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.47491 * 60.00143 * 20 18 16 32 32 H 1.09006 * 109.47341 * 180.02562 * 20 18 16 33 33 H 1.09001 * 109.47418 * 299.99686 * 20 18 16 34 34 H 1.08001 * 119.99357 * 359.72447 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2585 2.0620 -1.2092 5 6 2.7161 3.3578 -1.2544 6 6 2.9635 4.0563 -0.0567 7 6 3.4325 5.3828 -0.0844 8 1 3.2276 6.0453 0.7437 9 6 4.1665 5.8451 -1.1883 10 7 4.6445 4.9952 -2.0566 11 14 4.4591 7.6760 -1.4148 12 1 5.7182 8.0644 -0.7298 13 1 4.5683 7.9843 -2.8634 14 1 3.3237 8.4347 -0.8315 15 6 2.7233 3.3755 1.2195 16 6 2.9669 4.0649 2.4902 17 8 2.0343 4.5005 3.1327 18 6 4.3758 4.2323 2.9984 19 1 4.4269 5.1082 3.6453 20 6 4.7833 2.9886 3.7907 21 17 5.4963 4.4497 1.6028 22 6 2.2578 2.0585 1.2030 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0710 1.5337 -2.1323 29 1 2.8854 3.8391 -2.2063 30 1 5.1519 5.3145 -2.8190 31 1 4.7322 2.1128 3.1440 32 1 5.8022 3.1099 4.1588 33 1 4.1059 2.8572 4.6345 34 1 2.0700 1.5408 2.1320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396058921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:02 Heat of formation + Delta-G solvation = -57.909080 kcal Electronic energy + Delta-G solvation = -18206.405619 eV Core-core repulsion = 15321.659700 eV Total energy + Delta-G solvation = -2884.745919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62632 -38.85476 -36.80042 -36.08087 -33.99161 -33.29082 -31.31419 -30.62682 -27.29624 -26.03205 -23.87070 -23.37371 -21.92827 -19.99972 -19.08772 -17.38793 -17.04659 -16.88807 -16.12319 -15.89214 -15.33901 -15.10754 -14.59449 -14.29961 -14.14392 -13.82457 -13.62736 -13.46120 -13.23739 -13.01762 -12.85359 -12.60705 -12.53673 -12.19847 -11.98717 -11.84285 -11.70818 -11.44382 -11.28399 -11.18342 -10.88533 -10.26477 -9.29791 -9.00835 -8.62649 -6.23836 0.63791 0.95625 1.14334 1.37146 1.45856 1.52670 1.60860 2.18701 2.75213 3.13176 3.69902 3.85991 3.88963 4.29864 4.33317 4.49796 4.54983 4.68284 4.73520 4.74571 4.83818 5.04721 5.08191 5.11663 5.16291 5.18514 5.37712 5.44139 5.50721 5.67989 5.98286 6.07304 6.29237 6.32998 6.45804 6.69741 6.89447 7.03367 8.29950 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.009399 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.072425 B = 2978.452615 C = 4043.306068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C -0.214 4.214 4 C -0.086 4.086 5 C -0.193 4.193 6 C 0.134 3.866 7 C -0.445 4.445 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.797 5.797 11 Si 0.952 3.048 12 H -0.261 1.261 13 H -0.263 1.263 14 H -0.264 1.264 15 C -0.305 4.305 16 C 0.445 3.555 17 O -0.499 6.499 18 C -0.056 4.056 19 H 0.124 0.876 20 C -0.140 4.140 21 Cl -0.138 7.138 22 C -0.052 4.052 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.289 0.711 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -4.080 4.519 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.215 4.215 4 C -0.104 4.104 5 C -0.212 4.212 6 C 0.131 3.869 7 C -0.473 4.473 8 H 0.079 0.921 9 C -0.163 4.163 10 N -0.422 5.422 11 Si 0.774 3.226 12 H -0.186 1.186 13 H -0.187 1.187 14 H -0.188 1.188 15 C -0.308 4.308 16 C 0.324 3.676 17 O -0.376 6.376 18 C -0.101 4.101 19 H 0.142 0.858 20 C -0.197 4.197 21 Cl -0.111 7.111 22 C -0.071 4.071 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.187 -3.860 4.525 6.065 hybrid contribution 0.323 1.040 -0.444 1.176 sum 1.510 -2.819 4.081 5.185 Atomic orbital electron populations 1.21727 0.95341 1.01512 1.01040 1.20238 0.95710 0.92012 1.01712 1.19284 1.12077 0.98008 0.92180 1.20798 0.98185 0.94689 0.96739 1.21277 1.06212 0.95722 0.97994 1.18491 0.86993 0.92244 0.89155 1.19380 1.28853 0.96204 1.02903 0.92139 1.26399 0.92993 1.02961 0.93912 1.69711 1.24132 1.37716 1.10615 0.85623 0.79739 0.78380 0.78860 1.18600 1.18721 1.18774 1.20990 1.19650 0.97055 0.93060 1.22487 0.89406 0.71936 0.83750 1.90459 1.47408 1.41411 1.58304 1.24644 0.89992 1.04372 0.91116 0.85809 1.21969 1.04146 0.94217 0.99379 1.98791 1.65675 1.97888 1.48782 1.20509 0.97129 0.92511 0.96921 0.93938 0.93763 0.91069 0.91775 0.91675 0.87804 0.87416 0.89960 0.91408 0.88232 0.89618 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.90 71.98 0.71 -3.22 16 2 C -0.06 -1.88 6.03 29.85 0.18 -1.70 16 3 C -0.21 -8.79 5.14 -19.80 -0.10 -8.89 16 4 C -0.09 -3.81 9.59 22.21 0.21 -3.60 16 5 C -0.19 -9.68 8.69 22.73 0.20 -9.49 16 6 C 0.13 6.85 5.09 -19.85 -0.10 6.75 16 7 C -0.45 -22.55 5.86 23.40 0.14 -22.41 16 8 H 0.06 3.14 7.40 -2.91 -0.02 3.12 16 9 C 0.06 2.65 5.23 85.41 0.45 3.10 16 10 N -0.80 -38.72 10.85 21.90 0.24 -38.49 16 11 Si 0.95 37.24 29.58 68.60 2.03 39.27 16 12 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 13 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 14 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 15 C -0.31 -14.39 5.13 -18.56 -0.10 -14.49 16 16 C 0.44 19.33 4.81 27.87 0.13 19.47 16 17 O -0.50 -23.56 17.86 -3.22 -0.06 -23.62 16 18 C -0.06 -1.99 3.75 29.85 0.11 -1.88 16 19 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 20 C -0.14 -3.76 9.30 71.98 0.67 -3.10 16 21 Cl -0.14 -5.57 24.39 -2.72 -0.07 -5.64 16 22 C -0.05 -2.26 9.41 22.57 0.21 -2.04 16 23 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 27 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.11 5.63 6.17 -2.91 -0.02 5.61 16 30 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -57.21 303.03 5.95 -51.26 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.09 Total: 18.70 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 2.72 Total: -41.49 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.24 Total: -38.49 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 17 Polarization: -5.57 SS G_CDS: -0.07 Total: -5.64 kcal Total: -57.21 5.95 -51.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396058921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.646 kcal (2) G-P(sol) polarization free energy of solvation -57.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds