Wall clock time and date at job start Mon Mar 30 2020 07:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46729 * 2 1 4 4 C 1.37553 * 120.06781 * 264.97470 * 3 2 1 5 5 C 1.38669 * 121.22588 * 180.02562 * 4 3 2 6 6 C 1.38065 * 121.30926 * 359.78851 * 5 4 3 7 7 C 1.39646 * 120.01456 * 0.47249 * 6 5 4 8 8 C 1.46605 * 120.58735 * 179.78909 * 7 6 5 9 9 O 1.21342 * 120.00520 * 173.19683 * 8 7 6 10 10 C 1.50703 * 119.99877 * 353.20181 * 8 7 6 11 11 C 1.53005 * 109.47167 * 185.01883 * 10 8 7 12 12 Cl 1.80299 * 109.46930 * 175.27774 * 11 10 8 13 13 C 1.40781 * 120.07061 * 85.00257 * 3 2 1 14 14 C 1.40737 * 120.62289 * 359.95424 * 13 3 2 15 15 H 1.07999 * 119.99297 * 304.98525 * 14 13 3 16 16 C 1.40388 * 120.00337 * 124.98030 * 14 13 3 17 17 N 1.30568 * 120.00041 * 173.04911 * 16 14 13 18 18 Si 1.86801 * 120.00017 * 353.04879 * 16 14 13 19 19 H 1.48494 * 109.46970 * 95.69991 * 18 16 14 20 20 H 1.48494 * 109.46955 * 215.70251 * 18 16 14 21 21 H 1.48502 * 109.47115 * 335.70275 * 18 16 14 22 22 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47246 * 299.99655 * 1 2 3 24 24 H 1.08998 * 109.47440 * 60.00201 * 1 2 3 25 25 H 1.09001 * 109.47246 * 240.00345 * 2 1 3 26 26 H 1.08998 * 109.47440 * 119.99798 * 2 1 3 27 27 H 1.08000 * 119.38764 * 0.02719 * 4 3 2 28 28 H 1.08000 * 119.34610 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.99293 * 180.26132 * 6 5 4 30 30 H 1.09002 * 109.47062 * 65.02709 * 10 8 7 31 31 H 1.08997 * 109.47058 * 305.02433 * 10 8 7 32 32 H 1.08998 * 109.47810 * 295.28424 * 11 10 8 33 33 H 1.09004 * 109.46873 * 55.28032 * 11 10 8 34 34 H 0.96992 * 119.99728 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3602 2.0359 -1.1858 5 6 2.8251 3.3420 -1.2137 6 6 2.9723 4.0761 -0.0537 7 6 2.6602 3.5022 1.1805 8 6 2.8162 4.2686 2.4205 9 8 2.4271 3.8062 3.4727 10 6 3.4597 5.6309 2.3883 11 6 3.6129 6.1566 3.8170 12 17 4.5067 7.7221 3.7888 13 6 2.1673 2.1213 1.2137 14 6 1.8360 1.5078 2.4362 15 1 0.8548 1.0788 2.5766 16 6 2.7809 1.4532 3.4731 17 7 2.4334 1.0078 4.6502 18 14 4.5353 2.0178 3.1686 19 1 4.6839 3.4292 3.6055 20 1 5.4719 1.1601 3.9381 21 1 4.8447 1.9130 1.7199 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2537 1.4914 -2.1124 28 1 3.0733 3.7954 -2.1620 29 1 3.3322 5.0933 -0.1005 30 1 2.8340 6.3149 1.8148 31 1 4.4416 5.5580 1.9207 32 1 2.6268 6.3090 4.2559 33 1 4.1677 5.4320 4.4132 34 1 3.0862 0.9705 5.3666 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396059104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:58 Heat of formation + Delta-G solvation = -47.230299 kcal Electronic energy + Delta-G solvation = -18346.092098 eV Core-core repulsion = 15461.809246 eV Total energy + Delta-G solvation = -2884.282853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81510 -38.90892 -37.06747 -35.44765 -34.62516 -33.27572 -32.05898 -30.33422 -27.46629 -25.62523 -24.39578 -23.10314 -21.62231 -19.87245 -19.28456 -17.60093 -17.23249 -16.63316 -16.45594 -15.72997 -15.47990 -15.05746 -14.82177 -14.67422 -14.31899 -14.16155 -13.84969 -13.56441 -13.31150 -13.12464 -12.91537 -12.54361 -12.35938 -12.09664 -12.03547 -11.90438 -11.67872 -11.57842 -11.38960 -11.20556 -11.09202 -10.01729 -9.35512 -9.10681 -8.63416 -6.36956 0.08407 0.87394 1.13609 1.21561 1.28674 1.37166 1.86574 2.16716 2.86154 3.38219 3.40524 3.68004 3.88499 4.20679 4.28965 4.34613 4.48893 4.58338 4.67959 4.68826 4.73370 4.81247 4.91294 4.95338 5.07482 5.16220 5.33804 5.40871 5.46783 5.68384 5.76668 5.92535 6.09759 6.29320 6.44046 6.81841 6.94504 7.03179 8.39222 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.007760 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.256982 B = 3607.320528 C = 4414.317391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.180 4.180 4 C -0.068 4.068 5 C -0.219 4.219 6 C -0.048 4.048 7 C -0.295 4.295 8 C 0.373 3.627 9 O -0.470 6.470 10 C -0.167 4.167 11 C -0.012 4.012 12 Cl -0.185 7.185 13 C 0.113 3.887 14 C -0.474 4.474 15 H 0.054 0.946 16 C 0.095 3.905 17 N -0.855 5.855 18 Si 0.932 3.068 19 H -0.251 1.251 20 H -0.291 1.291 21 H -0.251 1.251 22 H 0.064 0.936 23 H 0.026 0.974 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.132 0.868 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 7.222 -8.641 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 C -0.181 4.181 4 C -0.086 4.086 5 C -0.238 4.238 6 C -0.066 4.066 7 C -0.297 4.297 8 C 0.255 3.745 9 O -0.349 6.349 10 C -0.205 4.205 11 C -0.075 4.075 12 Cl -0.159 7.159 13 C 0.110 3.890 14 C -0.503 4.503 15 H 0.072 0.928 16 C -0.119 4.119 17 N -0.483 5.483 18 Si 0.757 3.243 19 H -0.176 1.176 20 H -0.218 1.218 21 H -0.175 1.175 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.597 7.032 -7.833 11.124 hybrid contribution 0.428 -0.038 0.637 0.768 sum 4.025 6.993 -7.197 10.812 Atomic orbital electron populations 1.21619 0.95354 1.01305 1.00725 1.20213 0.95892 0.92758 1.01243 1.20495 1.07494 0.96823 0.93314 1.21143 0.95480 0.95246 0.96709 1.20943 1.09001 0.95531 0.98280 1.21413 0.94760 0.99392 0.91080 1.21640 1.18369 0.95054 0.94644 1.22325 0.75904 0.87850 0.88396 1.90590 1.40227 1.70562 1.33560 1.22344 1.04581 0.96012 0.97532 1.24077 0.99430 0.85163 0.98817 1.98689 1.79685 1.38331 1.99160 1.18866 0.87525 0.89552 0.93024 1.18902 1.00311 1.34931 0.96172 0.92753 1.26330 1.03247 0.89582 0.92768 1.69541 1.37511 1.38479 1.02754 0.86174 0.78567 0.79728 0.79880 1.17604 1.21782 1.17478 0.91689 0.95514 0.92103 0.90327 0.93590 0.84994 0.84252 0.83933 0.85243 0.86685 0.88239 0.89971 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.89 71.98 0.71 -3.89 16 2 C -0.06 -2.41 5.60 29.85 0.17 -2.25 16 3 C -0.18 -7.53 5.19 -19.40 -0.10 -7.63 16 4 C -0.07 -2.32 9.60 22.21 0.21 -2.11 16 5 C -0.22 -6.92 9.98 22.33 0.22 -6.70 16 6 C -0.05 -1.64 9.47 22.57 0.21 -1.42 16 7 C -0.29 -12.59 4.71 -18.56 -0.09 -12.67 16 8 C 0.37 15.47 4.27 27.87 0.12 15.59 16 9 O -0.47 -23.40 10.85 -3.22 -0.03 -23.43 16 10 C -0.17 -4.98 4.37 29.85 0.13 -4.85 16 11 C -0.01 -0.35 5.96 71.98 0.43 0.07 16 12 Cl -0.19 -4.78 29.15 -2.72 -0.08 -4.86 16 13 C 0.11 5.49 4.50 -19.85 -0.09 5.40 16 14 C -0.47 -26.41 7.15 23.40 0.17 -26.24 16 15 H 0.05 3.35 7.14 -2.91 -0.02 3.33 16 16 C 0.09 5.28 3.70 85.40 0.32 5.59 16 17 N -0.85 -49.80 13.91 21.90 0.30 -49.49 16 18 Si 0.93 44.24 23.57 68.60 1.62 45.86 16 19 H -0.25 -11.13 5.18 99.48 0.52 -10.62 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.25 -11.75 6.92 99.48 0.69 -11.06 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.03 1.07 7.20 -2.39 -0.02 1.06 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.43 8.05 -2.39 -0.02 2.41 16 26 H 0.05 1.99 7.33 -2.39 -0.02 1.97 16 27 H 0.13 3.61 8.05 -2.91 -0.02 3.58 16 28 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.14 3.64 7.12 -2.91 -0.02 3.62 16 30 H 0.13 3.12 8.08 -2.39 -0.02 3.10 16 31 H 0.12 3.05 8.13 -2.39 -0.02 3.03 16 32 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.08 2.72 7.36 -2.38 -0.02 2.70 16 34 H 0.28 15.24 8.29 -92.71 -0.77 14.47 16 Total: -1.00 -63.36 290.32 5.11 -58.26 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.88 Total: 14.77 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 2.41 Total: -41.10 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.30 Total: -49.49 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.03 Total: -23.43 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.62 Total: 45.86 kcal Atomic # 17 Polarization: -4.78 SS G_CDS: -0.08 Total: -4.86 kcal Total: -63.36 5.11 -58.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396059104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.028 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds