Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76205 * 99.99766 * 2 1 4 4 C 1.39708 * 119.85363 * 359.72432 * 3 2 1 5 5 C 1.36246 * 120.15115 * 179.76028 * 4 3 2 6 6 C 1.40953 * 119.84631 * 0.51861 * 5 4 3 7 7 C 1.41065 * 120.14721 * 179.76220 * 6 5 4 8 8 H 1.07997 * 120.00036 * 154.45222 * 7 6 5 9 9 C 1.39834 * 119.99940 * 334.45451 * 7 6 5 10 10 N 1.30924 * 120.00061 * 343.10595 * 9 7 6 11 11 Si 1.86803 * 119.99973 * 163.10286 * 9 7 6 12 12 H 1.48502 * 109.46890 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46832 * 119.99776 * 11 9 7 14 14 H 1.48491 * 109.47373 * 240.00313 * 11 9 7 15 15 C 1.40912 * 119.70235 * 359.73521 * 6 5 4 16 16 C 1.36281 * 119.85445 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.92770 * 179.97438 * 16 15 6 18 18 C 1.52995 * 109.47368 * 265.02374 * 17 16 15 19 19 C 1.50700 * 109.47014 * 180.02562 * 18 17 16 20 20 O 1.20826 * 119.99919 * 359.97438 * 19 18 17 21 21 O 1.34236 * 119.99980 * 180.02562 * 19 18 17 22 22 H 1.08999 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47284 * 299.99830 * 1 2 3 24 24 H 1.08998 * 109.47000 * 60.00110 * 1 2 3 25 25 H 1.08004 * 119.92161 * 0.02562 * 4 3 2 26 26 H 1.07997 * 120.08064 * 180.25013 * 5 4 3 27 27 H 0.96999 * 119.99785 * 179.97438 * 10 9 7 28 28 H 1.08008 * 120.07289 * 180.02562 * 15 6 5 29 29 H 1.09001 * 109.46960 * 25.02722 * 17 16 15 30 30 H 1.08999 * 109.46487 * 145.02357 * 17 16 15 31 31 H 1.09001 * 109.47364 * 300.00100 * 18 17 16 32 32 H 1.09004 * 109.46915 * 60.00369 * 18 17 16 33 33 H 0.96696 * 116.99878 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 1.0434 2.6305 -0.0058 5 6 1.2729 3.9735 -0.0009 6 6 2.5962 4.4590 -0.0010 7 6 2.8411 5.8482 -0.0010 8 1 3.7659 6.2335 0.4022 9 6 1.8865 6.7265 -0.5232 10 7 0.9343 6.2727 -1.2988 11 14 1.9696 8.5473 -0.1140 12 1 3.1318 8.8023 0.7747 13 1 2.1241 9.3295 -1.3668 14 1 0.7198 8.9574 0.5749 15 6 3.6732 3.5504 -0.0005 16 6 3.4297 2.2096 -0.0005 17 6 4.5803 1.2364 -0.0006 18 6 4.8889 0.8115 -1.4376 19 6 6.0391 -0.1622 -1.4375 20 8 6.5590 -0.4829 -0.3950 21 8 6.4867 -0.6723 -2.5956 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.0299 2.2571 -0.0099 26 1 0.4429 4.6645 -0.0014 27 1 0.2719 6.8819 -1.6607 28 1 4.6896 3.9159 -0.0002 29 1 5.4591 1.7128 0.4341 30 1 4.3139 0.3589 0.5886 31 1 4.0101 0.3351 -1.8723 32 1 5.1553 1.6891 -2.0267 33 1 7.2263 -1.2932 -2.5451 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396059803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = -108.346803 kcal Electronic energy + Delta-G solvation = -17393.604259 eV Core-core repulsion = 14508.714903 eV Total energy + Delta-G solvation = -2884.889357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24853 -39.65125 -37.16485 -36.06001 -34.52573 -32.11288 -30.66050 -29.57117 -27.30108 -26.01850 -22.84330 -22.48876 -21.45119 -19.22770 -18.73284 -17.96745 -17.40593 -17.21922 -16.99460 -16.10164 -15.67506 -15.08689 -14.72711 -14.66694 -14.35595 -14.22032 -13.93158 -13.49797 -13.40251 -13.19294 -12.82221 -12.62038 -12.53033 -12.49673 -12.36540 -12.03164 -11.81358 -11.62378 -11.31262 -11.13823 -10.83653 -10.00156 -9.38350 -8.69547 -8.19653 -6.27489 0.80207 1.05415 1.12792 1.22779 1.39395 1.46764 1.54023 1.79494 2.18268 2.21504 2.66270 3.62782 3.97968 4.04869 4.16415 4.33271 4.34491 4.38608 4.60858 4.72773 4.79631 4.88354 4.97259 5.05350 5.13730 5.20461 5.40576 5.61639 5.66994 5.80344 5.96808 6.07165 6.30373 6.62978 6.89770 6.96395 7.03644 8.29199 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.005663 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.045120 B = 4943.327752 C = 6064.718959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.156 6.156 3 C -0.212 4.212 4 C -0.104 4.104 5 C -0.176 4.176 6 C 0.084 3.916 7 C -0.489 4.489 8 H 0.077 0.923 9 C 0.037 3.963 10 N -0.821 5.821 11 Si 0.981 3.019 12 H -0.259 1.259 13 H -0.265 1.265 14 H -0.265 1.265 15 C -0.222 4.222 16 C -0.035 4.035 17 C -0.054 4.054 18 C -0.103 4.103 19 C 0.493 3.507 20 O -0.549 6.549 21 O -0.510 6.510 22 H 0.121 0.879 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.289 0.711 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -8.183 -2.004 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.081 5.919 3 C -0.324 4.324 4 C -0.127 4.127 5 C -0.197 4.197 6 C 0.081 3.919 7 C -0.518 4.518 8 H 0.095 0.905 9 C -0.178 4.178 10 N -0.446 5.446 11 Si 0.802 3.198 12 H -0.182 1.182 13 H -0.190 1.190 14 H -0.189 1.189 15 C -0.243 4.243 16 C -0.040 4.040 17 C -0.091 4.091 18 C -0.141 4.141 19 C 0.338 3.662 20 O -0.440 6.440 21 O -0.324 6.324 22 H 0.139 0.861 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 2.205 -8.961 -1.908 9.424 hybrid contribution -0.525 1.706 0.131 1.790 sum 1.679 -7.255 -1.776 7.656 Atomic orbital electron populations 1.23564 0.94293 1.07235 1.05228 1.84725 1.07962 1.04120 1.95082 1.21073 0.95375 0.95092 1.20833 1.20745 0.97108 0.93484 1.01316 1.20936 0.97143 0.94092 1.07524 1.18006 0.91911 0.93808 0.88179 1.19816 1.03983 0.91876 1.36161 0.90455 1.26732 0.93310 1.06004 0.91801 1.69906 1.12778 1.39575 1.22372 0.85169 0.79549 0.75890 0.79211 1.18234 1.19026 1.18926 1.20721 0.97649 0.92318 1.13566 1.18909 0.92236 0.93492 0.99373 1.20199 0.95940 0.97685 0.95312 1.21273 0.95399 0.98107 0.99327 1.23477 0.83025 0.79047 0.80700 1.90694 1.58703 1.60046 1.34585 1.84521 1.53035 1.59858 1.34970 0.86101 0.90347 0.90350 0.86704 0.87857 0.90002 0.87973 0.91093 0.90909 0.86808 0.86962 0.71121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.97 113.37 1.02 -2.59 16 2 S -0.16 -5.27 20.59 -56.49 -1.16 -6.43 16 3 C -0.21 -8.92 6.15 22.97 0.14 -8.78 16 4 C -0.10 -4.67 9.11 22.16 0.20 -4.47 16 5 C -0.18 -8.99 8.62 22.47 0.19 -8.79 16 6 C 0.08 4.44 5.57 -21.27 -0.12 4.32 16 7 C -0.49 -25.59 9.03 23.35 0.21 -25.38 16 8 H 0.08 3.92 7.90 -2.91 -0.02 3.90 16 9 C 0.04 1.81 5.15 85.21 0.44 2.25 16 10 N -0.82 -41.49 10.96 21.81 0.24 -41.25 16 11 Si 0.98 37.04 29.59 68.60 2.03 39.07 16 12 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 13 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 14 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 15 C -0.22 -10.54 9.35 22.47 0.21 -10.33 16 16 C -0.04 -1.51 5.12 -19.97 -0.10 -1.62 16 17 C -0.05 -1.92 4.08 29.85 0.12 -1.80 16 18 C -0.10 -3.12 5.79 29.85 0.17 -2.95 16 19 C 0.49 13.75 8.33 71.24 0.59 14.35 16 20 O -0.55 -18.44 16.74 21.96 0.37 -18.08 16 21 O -0.51 -10.58 13.42 -51.48 -0.69 -11.27 16 22 H 0.12 2.47 8.14 -2.40 -0.02 2.45 16 23 H 0.08 2.10 7.54 -2.40 -0.02 2.09 16 24 H 0.08 2.12 7.51 -2.40 -0.02 2.10 16 25 H 0.12 4.53 5.45 -2.91 -0.02 4.51 16 26 H 0.10 5.51 6.19 -2.91 -0.02 5.49 16 27 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 28 H 0.10 4.61 8.05 -2.91 -0.02 4.59 16 29 H 0.07 2.53 8.00 -2.39 -0.02 2.51 16 30 H 0.07 2.66 6.96 -2.39 -0.02 2.64 16 31 H 0.11 3.40 7.72 -2.39 -0.02 3.38 16 32 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.43 4.70 9.10 -74.06 -0.67 4.02 16 Total: -1.00 -61.50 296.89 4.33 -57.17 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.47 Total: 26.58 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 3.08 Total: -45.79 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.24 Total: -41.25 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.32 Total: -29.34 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.16 Total: -6.43 kcal Total: -61.50 4.33 -57.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396059803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.179 kcal (2) G-P(sol) polarization free energy of solvation -61.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds