Wall clock time and date at job start Mon Mar 30 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.47087 * 2 1 4 4 C 1.38658 * 119.74680 * 270.02101 * 3 2 1 5 5 C 1.37599 * 120.24774 * 180.02562 * 4 3 2 6 6 C 1.40724 * 119.74600 * 359.93010 * 5 4 3 7 7 C 1.41397 * 120.24635 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99931 * 211.64407 * 7 6 5 9 9 C 1.39943 * 119.99955 * 31.63922 * 7 6 5 10 10 N 1.30830 * 119.99709 * 10.18159 * 9 7 6 11 11 Si 1.86796 * 120.00026 * 190.17638 * 9 7 6 12 12 H 1.48503 * 109.46993 * 60.00340 * 11 9 7 13 13 H 1.48503 * 109.47048 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47250 * 300.00209 * 11 9 7 15 15 C 1.40706 * 119.51288 * 0.06826 * 6 5 4 16 16 C 1.50696 * 120.12617 * 180.25702 * 15 6 5 17 17 H 1.08998 * 109.46999 * 161.26247 * 16 15 6 18 18 Cl 1.80297 * 109.47557 * 41.25449 * 16 15 6 19 19 C 1.50703 * 109.46634 * 281.25202 * 16 15 6 20 20 C 1.50694 * 120.00411 * 274.99898 * 19 16 15 21 21 O 1.20759 * 119.99767 * 95.00973 * 19 16 15 22 22 C 1.37640 * 119.74362 * 359.97438 * 15 6 5 23 23 H 1.09002 * 109.46653 * 300.00399 * 1 2 3 24 24 H 1.08999 * 109.46653 * 59.99888 * 1 2 3 25 25 H 1.08995 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47040 * 239.99817 * 2 1 3 27 27 H 1.09003 * 109.46750 * 119.99364 * 2 1 3 28 28 H 1.08000 * 119.87608 * 359.97438 * 4 3 2 29 29 H 1.08005 * 120.12439 * 180.02562 * 5 4 3 30 30 H 0.97001 * 119.99219 * 180.02562 * 10 9 7 31 31 H 1.09006 * 109.47150 * 0.02562 * 20 19 16 32 32 H 1.09005 * 109.46905 * 120.00173 * 20 19 16 33 33 H 1.09001 * 109.47619 * 240.00482 * 20 19 16 34 34 H 1.07994 * 119.87881 * 180.02562 * 22 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2613 2.0696 -1.2039 5 6 2.7204 3.3667 -1.2159 6 6 2.9563 4.0352 -0.0002 7 6 3.4276 5.3683 -0.0002 8 1 4.0699 5.7140 0.7962 9 6 3.0618 6.2398 -1.0323 10 7 2.1325 5.8908 -1.8845 11 14 3.9002 7.9012 -1.1930 12 1 5.3585 7.7026 -1.3912 13 1 3.3366 8.6295 -2.3580 14 1 3.6718 8.6926 0.0426 15 6 2.7204 3.3670 1.2154 16 6 2.9628 4.0716 2.5252 17 1 2.4301 3.5516 3.3214 18 17 2.3679 5.7699 2.4133 19 6 4.4391 4.0753 2.8278 20 6 5.0708 2.8913 3.5134 21 8 5.1159 5.0272 2.5211 22 6 2.2620 2.0692 1.2034 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0793 1.5547 -2.1356 29 1 2.8977 3.8703 -2.1548 30 1 1.8793 6.4947 -2.6001 31 1 4.3094 2.1364 3.7100 32 1 5.8433 2.4689 2.8708 33 1 5.5166 3.2119 4.4550 34 1 2.0799 1.5544 2.1351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396060138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:21 Heat of formation + Delta-G solvation = -54.529961 kcal Electronic energy + Delta-G solvation = -18237.593099 eV Core-core repulsion = 15352.993709 eV Total energy + Delta-G solvation = -2884.599390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.64207 -39.36587 -36.56442 -35.87622 -34.32994 -32.86541 -30.86725 -30.51067 -27.96543 -26.65691 -23.90497 -22.56049 -21.56965 -20.12837 -19.04077 -17.41405 -16.64005 -16.57051 -16.38063 -15.83344 -15.64299 -15.13840 -14.46020 -14.38052 -14.00904 -13.79219 -13.40757 -13.25822 -13.16683 -12.99496 -12.89903 -12.89746 -12.46886 -12.29254 -11.92298 -11.78365 -11.57224 -11.51124 -11.22107 -11.01997 -10.57376 -10.38637 -9.20372 -8.86110 -8.52969 -6.13104 0.71409 1.03753 1.24734 1.31079 1.40658 1.48529 1.70789 2.22617 2.82319 3.22918 3.78972 4.03288 4.19040 4.24118 4.36291 4.45842 4.63494 4.68842 4.74738 4.78369 4.81017 5.08732 5.16052 5.16729 5.20687 5.34741 5.43570 5.53593 5.56738 5.79590 6.00440 6.25397 6.30265 6.45430 6.63036 6.85687 7.05855 7.11106 8.43916 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.009535 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.294121 B = 2935.813323 C = 4048.745297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.103 4.103 5 C -0.181 4.181 6 C 0.096 3.904 7 C -0.456 4.456 8 H 0.095 0.905 9 C 0.039 3.961 10 N -0.832 5.832 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.268 1.268 14 H -0.270 1.270 15 C -0.222 4.222 16 C 0.017 3.983 17 H 0.143 0.857 18 Cl -0.175 7.175 19 C 0.350 3.650 20 C -0.184 4.184 21 O -0.478 6.478 22 C -0.067 4.067 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.279 0.721 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -9.089 8.043 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 C -0.199 4.199 4 C -0.121 4.121 5 C -0.200 4.200 6 C 0.093 3.907 7 C -0.486 4.486 8 H 0.113 0.887 9 C -0.174 4.174 10 N -0.460 5.460 11 Si 0.771 3.229 12 H -0.190 1.190 13 H -0.192 1.192 14 H -0.195 1.195 15 C -0.224 4.224 16 C -0.027 4.027 17 H 0.161 0.839 18 Cl -0.148 7.148 19 C 0.227 3.773 20 C -0.241 4.241 21 O -0.353 6.353 22 C -0.085 4.085 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.505 -8.342 7.670 11.344 hybrid contribution 0.058 1.399 -0.764 1.595 sum 0.563 -6.943 6.907 9.809 Atomic orbital electron populations 1.21734 0.95550 1.01472 1.01031 1.20242 0.95489 0.91757 1.02103 1.19573 1.10293 0.97832 0.92230 1.20853 0.99492 0.94459 0.97298 1.21259 1.06547 0.94292 0.97946 1.17681 0.88983 0.92891 0.91105 1.20200 1.25846 0.95452 1.07107 0.88686 1.26359 0.94080 1.02795 0.94119 1.69858 1.24435 1.37944 1.13785 0.85757 0.79696 0.79039 0.78396 1.19019 1.19228 1.19494 1.19323 1.14794 0.96714 0.91561 1.23358 0.96014 0.84078 0.99217 0.83897 1.98701 1.89527 1.27680 1.98885 1.25348 0.89854 0.88206 0.73909 1.22183 1.03318 0.96259 1.02316 1.90380 1.65113 1.37456 1.42349 1.20553 0.97541 0.92735 0.97632 0.93253 0.94627 0.91108 0.92190 0.90441 0.88228 0.89153 0.91025 0.87314 0.88716 0.86779 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.90 71.98 0.71 -2.93 16 2 C -0.06 -1.64 6.05 29.85 0.18 -1.46 16 3 C -0.20 -7.41 5.16 -19.67 -0.10 -7.51 16 4 C -0.10 -4.50 9.67 22.22 0.21 -4.28 16 5 C -0.18 -9.33 8.64 22.73 0.20 -9.13 16 6 C 0.10 4.96 5.41 -21.29 -0.12 4.85 16 7 C -0.46 -24.73 6.21 23.46 0.15 -24.59 16 8 H 0.10 5.24 4.10 -2.91 -0.01 5.23 16 9 C 0.04 2.10 5.25 85.26 0.45 2.55 16 10 N -0.83 -45.51 11.01 21.83 0.24 -45.27 16 11 Si 0.95 42.97 29.57 68.60 2.03 45.00 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 C -0.22 -9.48 4.91 -19.40 -0.10 -9.57 16 16 C 0.02 0.64 3.01 29.10 0.09 0.73 16 17 H 0.14 3.98 7.98 -2.39 -0.02 3.96 16 18 Cl -0.17 -7.71 24.24 -2.72 -0.07 -7.78 16 19 C 0.35 12.29 6.22 29.10 0.18 12.47 16 20 C -0.18 -4.09 10.33 71.23 0.74 -3.35 16 21 O -0.48 -21.01 14.99 -1.45 -0.02 -21.03 16 22 C -0.07 -2.42 9.29 22.22 0.21 -2.22 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 27 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 28 H 0.10 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.09 5.05 6.43 -2.91 -0.02 5.03 16 30 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 31 H 0.11 1.78 8.00 -2.38 -0.02 1.76 16 32 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.13 3.68 8.02 -2.91 -0.02 3.66 16 Total: -1.00 -64.96 298.93 6.08 -58.89 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.10 Total: 14.63 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 2.80 Total: -44.45 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.24 Total: -45.27 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.02 Total: -21.03 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 17 Polarization: -7.71 SS G_CDS: -0.07 Total: -7.78 kcal Total: -64.96 6.08 -58.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.356 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds