Wall clock time and date at job start Mon Mar 30 2020 07:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.47142 * 2 1 4 4 C 1.38651 * 119.75131 * 90.00156 * 3 2 1 5 5 C 1.37602 * 120.25289 * 180.02562 * 4 3 2 6 6 C 1.40730 * 119.74251 * 359.97438 * 5 4 3 7 7 C 1.41397 * 120.24421 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99930 * 151.73815 * 7 6 5 9 9 C 1.39939 * 120.00177 * 331.73283 * 7 6 5 10 10 N 1.30826 * 119.99803 * 347.85680 * 9 7 6 11 11 Si 1.86797 * 120.00425 * 167.85200 * 9 7 6 12 12 H 1.48499 * 109.47164 * 90.00365 * 11 9 7 13 13 H 1.48500 * 109.47417 * 210.00775 * 11 9 7 14 14 H 1.48507 * 109.46935 * 330.00152 * 11 9 7 15 15 C 1.40701 * 119.51091 * 0.02562 * 6 5 4 16 16 C 1.50703 * 120.12558 * 180.02562 * 15 6 5 17 17 H 1.08999 * 109.47319 * 34.47564 * 16 15 6 18 18 Cl 1.80298 * 109.47138 * 154.47205 * 16 15 6 19 19 C 1.50701 * 109.47270 * 274.47467 * 16 15 6 20 20 C 1.50695 * 120.00361 * 88.65028 * 19 16 15 21 21 O 1.20763 * 119.99744 * 268.66013 * 19 16 15 22 22 C 1.37637 * 119.74420 * 0.27038 * 15 6 5 23 23 H 1.08994 * 109.46753 * 299.99983 * 1 2 3 24 24 H 1.09001 * 109.47056 * 59.99713 * 1 2 3 25 25 H 1.08994 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46492 * 240.00028 * 2 1 3 27 27 H 1.09001 * 109.47056 * 120.00287 * 2 1 3 28 28 H 1.08002 * 119.87253 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.12646 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00020 * 179.97438 * 10 9 7 31 31 H 1.09010 * 109.46870 * 4.92913 * 20 19 16 32 32 H 1.08996 * 109.46844 * 124.92433 * 20 19 16 33 33 H 1.08995 * 109.47413 * 244.92816 * 20 19 16 34 34 H 1.08003 * 119.87336 * 179.72658 * 22 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0694 1.2037 5 6 2.7199 3.3669 1.2158 6 6 2.9562 4.0352 0.0000 7 6 3.4265 5.3686 0.0000 8 1 4.0241 5.7305 -0.8236 9 6 3.1176 6.2196 1.0672 10 7 2.2086 5.8698 1.9407 11 14 4.0030 7.8548 1.2445 12 1 3.2517 8.9064 0.5132 13 1 4.0898 8.2174 2.6819 14 1 5.3716 7.7404 0.6795 15 6 2.7199 3.3670 -1.2154 16 6 2.9688 4.0693 -2.5254 17 1 3.8228 4.7387 -2.4223 18 17 3.3138 2.8479 -3.8060 19 6 1.7486 4.8669 -2.9076 20 6 1.5974 6.2882 -2.4300 21 8 0.8919 4.3670 -3.5964 22 6 2.2558 2.0713 -1.2034 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.0802 1.5544 2.1355 29 1 2.8975 3.8703 2.1546 30 1 1.9947 6.4595 2.6806 31 1 2.5005 6.5914 -1.9001 32 1 1.4409 6.9443 -3.2862 33 1 0.7417 6.3567 -1.7584 34 1 2.0695 1.5580 -2.1352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396060139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:26 Heat of formation + Delta-G solvation = -60.023319 kcal Electronic energy + Delta-G solvation = -18194.592317 eV Core-core repulsion = 15309.754718 eV Total energy + Delta-G solvation = -2884.837600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71186 -39.47254 -36.85010 -36.13961 -34.37739 -32.87855 -31.02134 -30.45458 -28.13369 -26.71105 -24.00048 -22.66902 -21.55282 -20.32545 -19.02284 -17.38709 -16.89981 -16.66140 -16.37441 -15.83285 -15.67944 -15.19555 -14.58451 -14.38640 -14.13297 -13.90872 -13.59074 -13.39280 -13.18593 -13.00802 -12.95141 -12.65753 -12.44938 -12.30244 -11.93452 -11.83627 -11.78568 -11.59870 -11.35535 -11.02776 -10.94497 -10.65493 -9.23738 -9.10675 -8.55596 -6.29329 0.61203 1.01249 1.16890 1.35458 1.48107 1.54826 1.59997 2.24771 2.78645 3.16025 3.73718 3.96545 4.14261 4.22701 4.30060 4.39076 4.59959 4.65584 4.68478 4.73692 4.75833 4.99744 5.07232 5.11450 5.18776 5.24527 5.38925 5.44878 5.49436 5.71325 5.97830 6.08631 6.26001 6.35112 6.46511 6.69237 6.94843 7.02337 8.39797 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.009211 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.027494 B = 3039.021173 C = 4243.777020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.204 4.204 4 C -0.100 4.100 5 C -0.178 4.178 6 C 0.106 3.894 7 C -0.479 4.479 8 H 0.093 0.907 9 C 0.046 3.954 10 N -0.824 5.824 11 Si 0.965 3.035 12 H -0.256 1.256 13 H -0.279 1.279 14 H -0.256 1.256 15 C -0.224 4.224 16 C 0.028 3.972 17 H 0.134 0.866 18 Cl -0.178 7.178 19 C 0.371 3.629 20 C -0.189 4.189 21 O -0.485 6.485 22 C -0.075 4.075 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.286 0.714 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 0.281 -2.598 2.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.118 4.118 5 C -0.197 4.197 6 C 0.103 3.897 7 C -0.509 4.509 8 H 0.111 0.889 9 C -0.170 4.170 10 N -0.450 5.450 11 Si 0.786 3.214 12 H -0.181 1.181 13 H -0.204 1.204 14 H -0.179 1.179 15 C -0.226 4.226 16 C -0.016 4.016 17 H 0.152 0.848 18 Cl -0.151 7.151 19 C 0.248 3.752 20 C -0.245 4.245 21 O -0.361 6.361 22 C -0.093 4.093 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.791 0.010 -2.858 2.965 hybrid contribution 0.296 0.577 0.451 0.790 sum 1.087 0.587 -2.407 2.706 Atomic orbital electron populations 1.21715 0.95438 1.01577 1.00854 1.20252 0.95672 0.92288 1.01702 1.19578 1.10759 0.97728 0.92438 1.20879 0.99317 0.94934 0.96663 1.21347 1.06136 0.93914 0.98350 1.17582 0.88936 0.93260 0.89903 1.19739 1.29830 0.95182 1.06100 0.88870 1.26550 0.93538 1.03180 0.93740 1.69857 1.24783 1.38395 1.11938 0.85438 0.79976 0.77624 0.78351 1.18050 1.20423 1.17909 1.19277 1.15111 0.96687 0.91509 1.23356 1.00324 0.90511 0.87380 0.84803 1.98663 1.95683 1.63106 1.57667 1.25037 0.85021 0.90679 0.74458 1.22259 1.06255 0.92318 1.03714 1.90346 1.41590 1.72416 1.31745 1.20615 0.97579 0.94197 0.96930 0.93672 0.94404 0.90901 0.92032 0.91309 0.87653 0.87448 0.90319 0.88016 0.86866 0.89550 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.90 71.98 0.71 -3.56 16 2 C -0.06 -2.08 6.05 29.85 0.18 -1.90 16 3 C -0.20 -8.56 5.16 -19.68 -0.10 -8.66 16 4 C -0.10 -4.39 9.67 22.22 0.21 -4.18 16 5 C -0.18 -8.63 8.66 22.73 0.20 -8.44 16 6 C 0.11 5.02 5.55 -21.29 -0.12 4.90 16 7 C -0.48 -21.27 6.56 23.46 0.15 -21.12 16 8 H 0.09 3.77 5.72 -2.91 -0.02 3.75 16 9 C 0.05 1.97 5.23 85.25 0.45 2.42 16 10 N -0.82 -38.46 10.88 21.82 0.24 -38.23 16 11 Si 0.96 32.96 29.58 68.60 2.03 34.99 16 12 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 13 H -0.28 -9.64 7.11 99.48 0.71 -8.93 16 14 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 15 C -0.22 -9.98 5.06 -19.40 -0.10 -10.08 16 16 C 0.03 1.10 2.78 29.10 0.08 1.18 16 17 H 0.13 4.75 6.38 -2.39 -0.02 4.74 16 18 Cl -0.18 -6.65 26.16 -2.72 -0.07 -6.72 16 19 C 0.37 14.23 6.37 29.10 0.19 14.42 16 20 C -0.19 -6.02 9.87 71.23 0.70 -5.31 16 21 O -0.49 -20.98 17.08 -1.46 -0.02 -21.00 16 22 C -0.08 -3.31 8.79 22.22 0.20 -3.11 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 27 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 28 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 29 H 0.11 5.45 6.24 -2.91 -0.02 5.43 16 30 H 0.29 12.31 8.30 -92.71 -0.77 11.54 16 31 H 0.10 3.18 5.67 -2.38 -0.01 3.16 16 32 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.10 4.42 6.65 -2.91 -0.02 4.40 16 Total: -1.00 -53.39 298.56 6.03 -47.36 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 1.11 Total: 27.04 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 2.75 Total: -43.44 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.24 Total: -38.23 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.02 Total: -21.00 kcal Atomic # 14 Polarization: 32.96 SS G_CDS: 2.03 Total: 34.99 kcal Atomic # 17 Polarization: -6.65 SS G_CDS: -0.07 Total: -6.72 kcal Total: -53.39 6.03 -47.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.665 kcal (2) G-P(sol) polarization free energy of solvation -53.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds