Wall clock time and date at job start Mon Mar 30 2020 07:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47385 * 2 1 4 4 C 1.37642 * 119.87603 * 265.00382 * 3 2 1 5 5 C 1.40703 * 119.74342 * 180.02562 * 4 3 2 6 6 C 1.41395 * 120.24081 * 180.02562 * 5 4 3 7 7 H 1.08004 * 120.00245 * 24.37426 * 6 5 4 8 8 C 1.39942 * 119.99926 * 204.36562 * 6 5 4 9 9 N 1.30830 * 119.99921 * 17.86623 * 8 6 5 10 10 Si 1.86798 * 120.00174 * 197.86048 * 8 6 5 11 11 H 1.48504 * 109.46809 * 90.00559 * 10 8 6 12 12 H 1.48498 * 109.47348 * 210.00090 * 10 8 6 13 13 H 1.48497 * 109.47596 * 330.00622 * 10 8 6 14 14 C 1.40724 * 119.51313 * 359.97438 * 5 4 3 15 15 C 1.37599 * 119.74554 * 0.02562 * 14 5 4 16 16 C 1.38614 * 119.87849 * 85.29355 * 3 2 1 17 17 C 1.50698 * 119.74699 * 359.97438 * 16 3 2 18 18 C 1.50696 * 109.47756 * 85.27212 * 17 16 3 19 19 O 1.20764 * 119.99719 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.00468 * 179.97438 * 18 17 16 21 21 Cl 1.80299 * 109.47301 * 180.02562 * 20 18 17 22 22 H 1.09003 * 109.46984 * 300.00120 * 1 2 3 23 23 H 1.09000 * 109.46694 * 59.99560 * 1 2 3 24 24 H 1.08996 * 109.47380 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46984 * 239.99880 * 2 1 3 26 26 H 1.08994 * 109.46953 * 120.00124 * 2 1 3 27 27 H 1.07997 * 120.13086 * 0.03720 * 4 3 2 28 28 H 0.96999 * 120.00195 * 179.97438 * 9 8 6 29 29 H 1.07999 * 120.13034 * 179.97438 * 14 5 4 30 30 H 1.08003 * 119.87505 * 179.97438 * 15 14 5 31 31 H 1.09000 * 109.47176 * 205.27919 * 17 16 3 32 32 H 1.09001 * 109.47393 * 325.27179 * 17 16 3 33 33 H 1.08993 * 109.47317 * 300.00580 * 20 18 17 34 34 H 1.09004 * 109.46732 * 60.00753 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3590 2.0325 -1.1890 5 6 2.8283 3.3590 -1.1857 6 6 3.1663 3.9978 -2.4010 7 1 2.7227 3.6648 -3.3277 8 6 4.0755 5.0616 -2.4030 9 7 4.8694 5.2455 -1.3794 10 14 4.1559 6.2188 -3.8671 11 1 3.2154 7.3487 -3.6571 12 1 5.5376 6.7445 -4.0074 13 1 3.7784 5.4834 -5.1008 14 6 2.9578 4.0455 0.0359 15 6 2.6254 3.4141 1.2124 16 6 2.1696 2.1046 1.1978 17 6 1.8145 1.4220 2.4935 18 6 2.9971 0.6266 2.9831 19 8 4.0228 0.6155 2.3457 20 6 2.9003 -0.1542 4.2684 21 17 4.4654 -0.9925 4.5818 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2552 1.4966 -2.1208 28 1 5.4998 5.9827 -1.3810 29 1 3.3174 5.0637 0.0501 30 1 2.7244 3.9388 2.1512 31 1 1.5477 2.1720 3.2381 32 1 0.9688 0.7535 2.3322 33 1 2.6818 0.5263 5.0913 34 1 2.1025 -0.8924 4.1858 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396060219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:38 Heat of formation + Delta-G solvation = -63.324237 kcal Electronic energy + Delta-G solvation = -17672.869336 eV Core-core repulsion = 14787.888597 eV Total energy + Delta-G solvation = -2884.980738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81379 -39.29335 -36.84348 -36.20262 -34.21038 -33.20750 -31.13483 -29.81493 -28.88236 -25.90001 -24.32784 -22.42302 -21.53850 -20.42816 -18.77070 -17.30938 -17.00869 -16.77469 -16.57910 -15.80014 -15.61257 -15.28536 -14.52343 -14.33396 -14.13331 -13.99650 -13.94174 -13.56829 -13.29445 -12.96676 -12.77198 -12.57459 -12.44014 -12.28204 -12.00057 -11.85320 -11.78038 -11.41907 -11.31618 -11.12770 -10.99931 -10.51734 -9.26717 -8.99868 -8.63031 -6.32959 0.94007 1.09259 1.15969 1.25440 1.34800 1.48684 1.51369 2.19304 2.66510 3.09010 3.74349 4.04270 4.17820 4.22181 4.29101 4.35679 4.41223 4.58349 4.65334 4.74065 4.85089 4.94454 5.05589 5.08360 5.12865 5.17530 5.41280 5.48480 5.59019 5.77258 6.01931 6.14165 6.25937 6.44334 6.68439 6.73972 6.95970 7.07772 8.33823 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.004965 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.588583 B = 5637.980842 C = 6300.928683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C -0.047 4.047 4 C -0.245 4.245 5 C 0.079 3.921 6 C -0.506 4.506 7 H 0.071 0.929 8 C 0.034 3.966 9 N -0.830 5.830 10 Si 0.983 3.017 11 H -0.259 1.259 12 H -0.268 1.268 13 H -0.259 1.259 14 C -0.197 4.197 15 C -0.099 4.099 16 C -0.191 4.191 17 C -0.103 4.103 18 C 0.336 3.664 19 O -0.468 6.468 20 C -0.082 4.082 21 Cl -0.188 7.188 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.286 0.714 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.158 0.842 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 -7.885 10.690 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 C -0.047 4.047 4 C -0.264 4.264 5 C 0.077 3.923 6 C -0.536 4.536 7 H 0.089 0.911 8 C -0.180 4.180 9 N -0.456 5.456 10 Si 0.804 3.196 11 H -0.184 1.184 12 H -0.193 1.193 13 H -0.183 1.183 14 C -0.217 4.217 15 C -0.117 4.117 16 C -0.192 4.192 17 C -0.139 4.139 18 C 0.211 3.789 19 O -0.341 6.341 20 C -0.144 4.144 21 Cl -0.161 7.161 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.176 0.824 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.708 -7.825 10.459 15.167 hybrid contribution 0.705 0.816 -0.924 1.420 sum -7.003 -7.009 9.535 13.751 Atomic orbital electron populations 1.21700 0.92979 1.02431 1.02180 1.20487 0.97450 0.91976 1.01539 1.19551 0.97117 0.95632 0.92399 1.21003 1.13327 0.95368 0.96713 1.17943 0.89242 0.91296 0.93781 1.19828 1.23798 1.15271 0.94681 0.91094 1.26777 0.92623 0.98287 1.00357 1.69916 1.15517 1.27706 1.32507 0.85200 0.78552 0.78046 0.77851 1.18384 1.19297 1.18275 1.21224 1.07474 0.99967 0.93018 1.20821 0.98904 0.95385 0.96581 1.18932 1.11685 0.94782 0.93809 1.20944 0.97282 1.00317 0.95386 1.25384 0.89020 0.78743 0.85729 1.90531 1.32499 1.55031 1.56083 1.25261 0.88435 1.01054 0.99677 1.98740 1.39720 1.81411 1.96230 0.91293 0.94037 0.90347 0.92971 0.91241 0.89647 0.90327 0.88659 0.87506 0.85858 0.85450 0.82437 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.72 71.98 0.70 -2.69 16 2 C -0.08 -2.51 5.37 29.85 0.16 -2.35 16 3 C -0.05 -2.01 5.13 -19.92 -0.10 -2.12 16 4 C -0.24 -12.61 9.42 22.73 0.21 -12.40 16 5 C 0.08 4.53 5.57 -21.29 -0.12 4.42 16 6 C -0.51 -28.99 9.05 23.46 0.21 -28.78 16 7 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 8 C 0.03 1.79 5.14 85.25 0.44 2.23 16 9 N -0.83 -46.30 10.95 21.83 0.24 -46.06 16 10 Si 0.98 40.23 29.60 68.60 2.03 42.26 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 12 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 13 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 14 C -0.20 -10.86 8.70 22.73 0.20 -10.67 16 15 C -0.10 -4.58 9.65 22.22 0.21 -4.37 16 16 C -0.19 -7.68 4.40 -19.68 -0.09 -7.77 16 17 C -0.10 -2.64 5.09 29.10 0.15 -2.49 16 18 C 0.34 9.15 6.40 29.10 0.19 9.34 16 19 O -0.47 -18.73 15.69 -1.46 -0.02 -18.75 16 20 C -0.08 -1.34 7.07 71.24 0.50 -0.84 16 21 Cl -0.19 -4.62 28.37 -2.72 -0.08 -4.70 16 22 H 0.07 1.50 6.82 -2.39 -0.02 1.49 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 26 H 0.07 2.02 6.38 -2.39 -0.02 2.00 16 27 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 29 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.12 2.43 8.05 -2.39 -0.02 2.41 16 32 H 0.13 2.45 5.59 -2.39 -0.01 2.43 16 33 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -73.25 302.56 5.94 -67.31 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.10 Total: 18.42 kcal Atomic # 6 Polarization: -61.15 SS G_CDS: 2.67 Total: -58.48 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.24 Total: -46.06 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.02 Total: -18.75 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 17 Polarization: -4.62 SS G_CDS: -0.08 Total: -4.70 kcal Total: -73.25 5.94 -67.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.983 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds