Wall clock time and date at job start Mon Mar 30 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76202 * 102.99947 * 2 1 4 4 C 1.38998 * 120.07797 * 0.02562 * 3 2 1 5 5 C 1.38058 * 119.91483 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.08356 * 359.72816 * 5 4 3 7 7 C 1.50693 * 119.92357 * 180.29451 * 6 5 4 8 8 C 1.50707 * 109.47127 * 265.25480 * 7 6 5 9 9 O 1.20825 * 119.99734 * 359.97438 * 8 7 6 10 10 O 1.34227 * 119.99818 * 180.02562 * 8 7 6 11 11 C 1.38282 * 120.15576 * 0.54764 * 6 5 4 12 12 C 1.50703 * 119.95851 * 179.72563 * 11 6 5 13 13 C 1.50701 * 109.47064 * 84.72442 * 12 11 6 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38104 * 120.08251 * 359.44901 * 11 6 5 22 22 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47315 * 300.00606 * 1 2 3 24 24 H 1.09003 * 109.46871 * 60.00557 * 1 2 3 25 25 H 1.07993 * 120.04272 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.95920 * 180.02562 * 5 4 3 27 27 H 1.09003 * 109.46864 * 25.24820 * 7 6 5 28 28 H 1.08998 * 109.47483 * 145.25060 * 7 6 5 29 29 H 0.96701 * 116.99650 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47152 * 324.72535 * 12 11 6 31 31 H 1.09001 * 109.46980 * 204.72635 * 12 11 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.04170 * 180.24719 * 21 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8329 4.4131 0.0067 7 6 3.1720 5.8814 0.0140 8 6 3.4037 6.3505 -1.3993 9 8 3.3043 5.5721 -2.3181 10 8 3.7216 7.6327 -1.6372 11 6 3.8455 3.4715 0.0005 12 6 5.2858 3.9151 0.0005 13 6 5.7296 4.1807 1.4159 14 1 5.0381 4.0418 2.2338 15 6 7.0188 4.6002 1.6669 16 7 7.8611 4.7689 0.6711 17 14 7.5691 4.9288 3.4215 18 1 8.1252 3.6827 4.0075 19 1 8.6128 5.9853 3.4233 20 1 6.4071 5.3796 4.2286 21 6 3.5387 2.1249 0.0000 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 0.1617 2.3526 0.0014 26 1 0.7212 4.7488 0.0019 27 1 2.3467 6.4427 0.4523 28 1 4.0747 6.0430 0.6032 29 1 3.8612 7.8864 -2.5599 30 1 5.3851 4.8268 -0.5886 31 1 5.9071 3.1321 -0.4343 32 1 8.7680 5.0643 0.8476 33 1 4.3301 1.3900 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396083865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:20 Heat of formation + Delta-G solvation = -83.508617 kcal Electronic energy + Delta-G solvation = -17701.676268 eV Core-core repulsion = 14817.863976 eV Total energy + Delta-G solvation = -2883.812292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02231 -38.60210 -35.68264 -33.74619 -32.43837 -31.30469 -29.13795 -28.04086 -26.76261 -23.40094 -22.45690 -21.00129 -19.98441 -17.69388 -16.87662 -16.40226 -15.98575 -15.80434 -15.34783 -14.70514 -14.58633 -14.03565 -13.76175 -13.36396 -12.90405 -12.74217 -12.47539 -12.25612 -11.95360 -11.88518 -11.43884 -11.13521 -11.04308 -10.99677 -10.58096 -10.50386 -10.16087 -9.95441 -9.66158 -9.53001 -9.07850 -8.48943 -8.00674 -7.06278 -6.10730 -4.16336 1.65708 1.74856 1.99450 2.63451 2.69202 3.27308 3.34139 3.36939 3.50330 4.28525 4.44857 5.03970 5.05491 5.10736 5.23212 5.31284 5.37476 5.59336 5.61516 5.84584 5.90951 6.07156 6.23223 6.36208 6.62255 6.72705 6.86121 6.89693 7.07416 7.40575 7.55128 7.72367 7.84981 8.21745 8.32688 8.89827 9.48531 10.98750 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.007091 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.463588 B = 3947.907546 C = 5331.340483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.134 6.134 3 C -0.079 4.079 4 C -0.159 4.159 5 C -0.090 4.090 6 C -0.084 4.084 7 C -0.073 4.073 8 C 0.485 3.515 9 O -0.512 6.512 10 O -0.520 6.520 11 C 0.002 3.998 12 C 0.048 3.952 13 C -0.517 4.517 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.101 4.101 22 H 0.102 0.898 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.403 0.597 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -0.894 -1.673 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.107 5.893 3 C -0.191 4.191 4 C -0.182 4.182 5 C -0.109 4.109 6 C -0.086 4.086 7 C -0.111 4.111 8 C 0.327 3.673 9 O -0.399 6.399 10 O -0.332 6.332 11 C 0.000 4.000 12 C 0.011 3.989 13 C -0.555 4.555 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.125 4.125 22 H 0.120 0.880 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.261 0.739 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.583 -2.239 -1.557 12.875 hybrid contribution -0.336 1.422 0.281 1.488 sum -12.919 -0.817 -1.276 13.008 Atomic orbital electron populations 1.23587 0.95632 1.06388 1.05395 1.85375 1.05499 1.05039 1.93382 1.21572 0.96901 0.95125 1.05508 1.20782 0.97295 0.93005 1.07135 1.20732 0.95431 0.95080 0.99694 1.19105 0.92863 0.93261 1.03413 1.20314 1.06548 0.93318 0.90881 1.23520 0.71941 0.79047 0.92771 1.90702 1.47555 1.54965 1.46678 1.84554 1.82188 1.30212 1.36233 1.20437 0.98149 0.91477 0.89935 1.18399 0.85307 0.97395 0.97823 1.21014 0.96848 1.46036 0.91607 0.92185 1.25014 0.96557 0.95269 0.97233 1.69962 1.05743 1.46132 1.30921 0.86544 0.78555 0.78092 0.84607 1.20523 1.21125 1.19660 1.20659 0.93502 0.96113 1.02187 0.87960 0.90013 0.90057 0.86746 0.86620 0.87972 0.84339 0.73893 0.95220 0.95143 0.92694 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.15 101.05 0.92 -0.54 16 2 S -0.13 -2.00 22.56 -107.50 -2.43 -4.42 16 3 C -0.08 -1.41 6.11 -39.04 -0.24 -1.65 16 4 C -0.16 -2.58 9.36 -39.37 -0.37 -2.95 16 5 C -0.09 -1.50 9.67 -39.61 -0.38 -1.88 16 6 C -0.08 -1.62 4.38 -104.57 -0.46 -2.08 16 7 C -0.07 -1.28 5.27 -29.03 -0.15 -1.43 16 8 C 0.48 8.65 7.52 36.01 0.27 8.92 16 9 O -0.51 -10.64 16.79 -18.75 -0.31 -10.95 16 10 O -0.52 -7.61 13.42 -39.25 -0.53 -8.14 16 11 C 0.00 0.04 5.07 -104.65 -0.53 -0.49 16 12 C 0.05 1.21 4.43 -29.03 -0.13 1.08 16 13 C -0.52 -13.82 8.27 -34.44 -0.28 -14.11 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 17 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.10 -2.09 9.42 -39.37 -0.37 -2.47 16 22 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 24 H 0.08 0.79 7.75 -51.92 -0.40 0.39 16 25 H 0.11 1.51 5.88 -52.49 -0.31 1.20 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.10 1.38 8.05 -51.93 -0.42 0.97 16 28 H 0.14 2.70 6.39 -51.93 -0.33 2.37 16 29 H 0.40 4.07 9.10 45.56 0.41 4.49 16 30 H 0.03 0.79 6.42 -51.93 -0.33 0.46 16 31 H 0.03 0.83 8.05 -51.93 -0.42 0.41 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -31.87 300.73 -7.85 -39.72 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.01 Total: 4.30 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.82 Total: -16.00 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.74 Total: -24.88 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.84 Total: -19.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.43 Total: -4.42 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.87 -7.85 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.792 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds