Wall clock time and date at job start Mon Mar 30 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76202 * 102.99947 * 2 1 4 4 C 1.38998 * 120.07797 * 0.02562 * 3 2 1 5 5 C 1.38058 * 119.91483 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.08356 * 359.72816 * 5 4 3 7 7 C 1.50693 * 119.92357 * 180.29451 * 6 5 4 8 8 C 1.50707 * 109.47127 * 265.25480 * 7 6 5 9 9 O 1.20825 * 119.99734 * 359.97438 * 8 7 6 10 10 O 1.34227 * 119.99818 * 180.02562 * 8 7 6 11 11 C 1.38282 * 120.15576 * 0.54764 * 6 5 4 12 12 C 1.50703 * 119.95851 * 179.72563 * 11 6 5 13 13 C 1.50701 * 109.47064 * 84.72442 * 12 11 6 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.38104 * 120.08251 * 359.44901 * 11 6 5 22 22 H 1.08997 * 109.46961 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47315 * 300.00606 * 1 2 3 24 24 H 1.09003 * 109.46871 * 60.00557 * 1 2 3 25 25 H 1.07993 * 120.04272 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.95920 * 180.02562 * 5 4 3 27 27 H 1.09003 * 109.46864 * 25.24820 * 7 6 5 28 28 H 1.08998 * 109.47483 * 145.25060 * 7 6 5 29 29 H 0.96701 * 116.99650 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47152 * 324.72535 * 12 11 6 31 31 H 1.09001 * 109.46980 * 204.72635 * 12 11 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.04170 * 180.24719 * 21 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8329 4.4131 0.0067 7 6 3.1720 5.8814 0.0140 8 6 3.4037 6.3505 -1.3993 9 8 3.3043 5.5721 -2.3181 10 8 3.7216 7.6327 -1.6372 11 6 3.8455 3.4715 0.0005 12 6 5.2858 3.9151 0.0005 13 6 5.7296 4.1807 1.4159 14 1 5.0381 4.0418 2.2338 15 6 7.0188 4.6002 1.6669 16 7 7.8611 4.7689 0.6711 17 14 7.5691 4.9288 3.4215 18 1 8.1252 3.6827 4.0075 19 1 8.6128 5.9853 3.4233 20 1 6.4071 5.3796 4.2286 21 6 3.5387 2.1249 0.0000 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 0.1617 2.3526 0.0014 26 1 0.7212 4.7488 0.0019 27 1 2.3467 6.4427 0.4523 28 1 4.0747 6.0430 0.6032 29 1 3.8612 7.8864 -2.5599 30 1 5.3851 4.8268 -0.5886 31 1 5.9071 3.1321 -0.4343 32 1 8.7680 5.0643 0.8476 33 1 4.3301 1.3900 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396083865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:19 Heat of formation + Delta-G solvation = -103.090720 kcal Electronic energy + Delta-G solvation = -17702.525412 eV Core-core repulsion = 14817.863976 eV Total energy + Delta-G solvation = -2884.661436 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42834 -40.02160 -37.02319 -35.60859 -34.00637 -32.95862 -30.12857 -29.53241 -28.38660 -25.28465 -23.84089 -22.52965 -21.39934 -19.07041 -18.54716 -18.13119 -17.39752 -17.22976 -16.60447 -16.51988 -16.09416 -15.34486 -14.74680 -14.57148 -14.44173 -14.19500 -14.00921 -13.59801 -13.42304 -13.28657 -13.12750 -12.78577 -12.66814 -12.46393 -12.29608 -12.16649 -11.61270 -11.59030 -11.36551 -11.12564 -10.61588 -10.41819 -9.57373 -8.31187 -8.19693 -6.34505 0.24123 0.55176 0.62360 1.29627 1.41737 1.42681 1.53878 1.56355 2.22709 2.40347 2.93451 3.10887 3.76528 3.93801 4.05005 4.31805 4.32207 4.34728 4.46660 4.55753 4.64999 4.77219 4.87235 4.90786 5.11097 5.26366 5.32995 5.33864 5.48717 5.65877 5.73268 5.93681 6.03329 6.16944 6.78190 7.06766 7.34765 8.89197 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.007091 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.463588 B = 3947.907546 C = 5331.340483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.164 6.164 3 C -0.083 4.083 4 C -0.149 4.149 5 C -0.083 4.083 6 C -0.096 4.096 7 C -0.073 4.073 8 C 0.489 3.511 9 O -0.548 6.548 10 O -0.512 6.512 11 C -0.031 4.031 12 C 0.062 3.938 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.258 1.258 21 C -0.129 4.129 22 H 0.128 0.872 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.148 0.852 28 H 0.112 0.888 29 H 0.424 0.576 30 H 0.008 0.992 31 H -0.011 1.011 32 H 0.265 0.735 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.583 -0.446 -0.472 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.077 5.923 3 C -0.195 4.195 4 C -0.172 4.172 5 C -0.102 4.102 6 C -0.098 4.098 7 C -0.110 4.110 8 C 0.333 3.667 9 O -0.438 6.438 10 O -0.325 6.325 11 C -0.033 4.033 12 C 0.025 3.975 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.788 3.212 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.182 1.182 21 C -0.152 4.152 22 H 0.146 0.854 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.173 0.827 26 H 0.177 0.823 27 H 0.165 0.835 28 H 0.130 0.870 29 H 0.285 0.715 30 H 0.026 0.974 31 H 0.007 0.993 32 H 0.074 0.926 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.865 -1.777 -0.360 15.968 hybrid contribution 0.583 1.230 -0.164 1.371 sum -15.282 -0.547 -0.523 15.301 Atomic orbital electron populations 1.23758 0.90772 1.08565 1.06680 1.85516 1.10753 1.02999 1.93014 1.21753 0.96013 0.97362 1.04355 1.21303 0.98724 0.92507 1.04679 1.21197 0.95049 0.96379 0.97584 1.19313 0.93524 0.93549 1.03432 1.20340 1.07029 0.93133 0.90539 1.23601 0.71080 0.79444 0.92594 1.90688 1.49380 1.56036 1.47736 1.84500 1.81368 1.28487 1.38169 1.20179 0.96727 0.92937 0.93474 1.18067 0.87755 0.94922 0.96743 1.21266 0.97088 1.45429 0.92236 0.92125 1.25911 0.96603 0.94959 1.01548 1.70098 1.06155 1.47318 1.33327 0.85466 0.78443 0.77950 0.79381 1.20311 1.20555 1.18172 1.20572 0.94887 0.95372 1.04372 0.85390 0.88554 0.88775 0.82655 0.82335 0.83451 0.86983 0.71538 0.97387 0.99270 0.92579 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.15 113.37 1.04 -1.08 16 2 S -0.16 -4.66 22.56 -56.49 -1.27 -5.94 16 3 C -0.08 -2.89 6.11 22.62 0.14 -2.75 16 4 C -0.15 -4.34 9.36 22.41 0.21 -4.13 16 5 C -0.08 -2.50 9.67 22.25 0.22 -2.28 16 6 C -0.10 -3.64 4.38 -19.83 -0.09 -3.73 16 7 C -0.07 -2.50 5.27 29.10 0.15 -2.35 16 8 C 0.49 17.26 7.52 71.24 0.54 17.80 16 9 O -0.55 -23.00 16.79 21.97 0.37 -22.63 16 10 O -0.51 -14.41 13.42 -51.38 -0.69 -15.10 16 11 C -0.03 -1.44 5.07 -19.88 -0.10 -1.54 16 12 C 0.06 3.39 4.43 29.10 0.13 3.51 16 13 C -0.52 -29.14 8.27 25.60 0.21 -28.93 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.01 0.47 5.46 84.66 0.46 0.93 16 16 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 17 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 21 C -0.13 -5.57 9.42 22.41 0.21 -5.36 16 22 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.10 1.36 7.75 -2.40 -0.02 1.35 16 24 H 0.09 1.37 7.75 -2.39 -0.02 1.35 16 25 H 0.16 3.22 5.88 -2.91 -0.02 3.20 16 26 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 27 H 0.15 3.53 8.05 -2.39 -0.02 3.51 16 28 H 0.11 4.47 6.39 -2.39 -0.02 4.45 16 29 H 0.42 8.04 9.10 -74.06 -0.67 7.36 16 30 H 0.01 0.46 6.42 -2.39 -0.02 0.44 16 31 H -0.01 -0.67 8.05 -2.39 -0.02 -0.69 16 32 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -73.42 300.73 4.30 -69.13 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.46 Total: 14.49 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.12 Total: -29.91 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.50 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.32 Total: -37.73 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.27 Total: -5.94 kcal Total: -73.42 4.30 -69.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.963 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds