Wall clock time and date at job start Mon Mar 30 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76208 * 102.99657 * 2 1 4 4 C 1.38998 * 120.07989 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.91403 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.08491 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.92215 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47214 * 265.02725 * 7 6 5 9 9 H 1.07991 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99809 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00143 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99889 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47423 * 89.99447 * 12 10 8 14 14 H 1.48499 * 109.46889 * 209.99639 * 12 10 8 15 15 H 1.48502 * 109.46597 * 329.99641 * 12 10 8 16 16 C 1.38282 * 120.16154 * 359.97438 * 6 5 4 17 17 C 1.50697 * 119.96288 * 179.97438 * 16 6 5 18 18 C 1.50700 * 109.47266 * 84.99587 * 17 16 6 19 19 O 1.20822 * 119.99958 * 0.02562 * 18 17 16 20 20 O 1.34234 * 120.00068 * 180.02562 * 18 17 16 21 21 C 1.38104 * 120.08187 * 0.25107 * 16 6 5 22 22 H 1.08994 * 109.47626 * 60.00029 * 1 2 3 23 23 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47455 * 299.99881 * 1 2 3 25 25 H 1.07994 * 120.04055 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.95098 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46781 * 25.02366 * 7 6 5 28 28 H 1.08996 * 109.47329 * 145.02529 * 7 6 5 29 29 H 0.96996 * 119.99773 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.47205 * 324.99681 * 17 16 6 31 31 H 1.08997 * 109.47395 * 205.00173 * 17 16 6 32 32 H 0.96698 * 117.00153 * 179.97438 * 20 18 17 33 33 H 1.07994 * 120.04266 * 179.74909 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1949 2.6663 0.0005 5 6 1.5093 4.0106 0.0000 6 6 2.8326 4.4132 -0.0016 7 6 3.1716 5.8816 -0.0028 8 6 3.4031 6.3426 -1.4188 9 1 3.3141 5.6423 -2.2360 10 6 3.7296 7.6582 -1.6707 11 7 3.8384 8.5110 -0.6754 12 14 4.0158 8.2299 -3.4259 13 1 2.7327 8.6956 -4.0104 14 1 4.9954 9.3460 -3.4294 15 1 4.5471 7.1023 -4.2332 16 6 3.8453 3.4716 -0.0021 17 6 5.2855 3.9152 -0.0045 18 6 5.7310 4.1828 1.4101 19 8 4.9585 4.0286 2.3262 20 8 6.9862 4.5925 1.6523 21 6 3.5385 2.1251 -0.0063 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.1616 2.3526 0.0014 26 1 0.7209 4.7487 0.0008 27 1 2.3464 6.4453 0.4325 28 1 4.0744 6.0465 0.5852 29 1 4.0684 9.4365 -0.8527 30 1 5.3841 4.8262 -0.5949 31 1 5.9063 3.1318 -0.4389 32 1 7.2255 4.7517 2.5756 33 1 4.3299 1.3903 -0.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396095649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:39 Heat of formation + Delta-G solvation = -83.752597 kcal Electronic energy + Delta-G solvation = -17697.558941 eV Core-core repulsion = 14813.736069 eV Total energy + Delta-G solvation = -2883.822872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02219 -38.60824 -35.67803 -33.74060 -32.50789 -31.22956 -29.27976 -27.89641 -26.82362 -23.51750 -22.34197 -21.01342 -19.97943 -17.69316 -16.98129 -16.44588 -15.89426 -15.79456 -15.40053 -14.67739 -14.51010 -14.08744 -13.76742 -13.36407 -12.92213 -12.79056 -12.47335 -12.26174 -12.01257 -11.87791 -11.40831 -11.26191 -11.04464 -10.91821 -10.67244 -10.38709 -10.14812 -10.10642 -9.71752 -9.52386 -8.77480 -8.50759 -8.35183 -6.99669 -6.11756 -4.18205 1.72426 1.75337 1.88062 2.60489 2.69818 3.25577 3.32671 3.35664 3.51259 4.27617 4.43974 5.03681 5.05639 5.05830 5.21336 5.29933 5.46256 5.58416 5.63506 5.85163 5.90249 6.04583 6.19121 6.40238 6.53273 6.65715 6.88126 6.98384 7.05137 7.38949 7.54753 7.71275 7.83293 8.20407 8.33099 8.88222 9.46842 10.96928 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.006439 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.068944 B = 4347.350002 C = 5433.581563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.144 6.144 3 C -0.111 4.111 4 C -0.125 4.125 5 C -0.109 4.109 6 C -0.013 4.013 7 C 0.047 3.953 8 C -0.517 4.517 9 H 0.060 0.940 10 C 0.062 3.938 11 N -0.890 5.890 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.068 4.068 17 C -0.074 4.074 18 C 0.485 3.515 19 O -0.511 6.511 20 O -0.520 6.520 21 C -0.082 4.082 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.404 0.596 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 -12.461 1.716 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.096 5.904 3 C -0.222 4.222 4 C -0.148 4.148 5 C -0.128 4.128 6 C -0.015 4.015 7 C 0.011 3.989 8 C -0.555 4.555 9 H 0.078 0.922 10 C -0.141 4.141 11 N -0.528 5.528 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.069 4.069 17 C -0.111 4.111 18 C 0.328 3.672 19 O -0.398 6.398 20 O -0.331 6.331 21 C -0.105 4.105 22 H 0.101 0.899 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.261 0.739 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.434 -13.439 1.599 13.541 hybrid contribution -0.619 1.683 -0.288 1.816 sum -1.053 -11.757 1.311 11.876 Atomic orbital electron populations 1.23570 0.95182 1.06372 1.05565 1.85134 1.06119 1.05135 1.94054 1.21251 0.96471 0.95041 1.09487 1.21041 0.97358 0.93393 1.02979 1.20955 0.96658 0.94523 1.00705 1.20569 0.91823 0.98424 0.90672 1.18391 0.97904 0.84906 0.97737 1.21024 1.48234 0.94627 0.91646 0.92205 1.25018 0.95160 0.96673 0.97222 1.69964 1.47698 1.04185 1.30932 0.86549 0.78140 0.78526 0.84623 1.20567 1.21103 1.19634 1.18959 0.93437 0.92179 1.02363 1.20313 0.93601 1.06220 0.90994 1.23460 0.78786 0.72268 0.92690 1.90703 1.53872 1.48393 1.46877 1.84550 1.32516 1.79888 1.36192 1.20426 0.94041 0.94999 1.01052 0.89931 0.87987 0.89981 0.86715 0.85851 0.95227 0.95313 0.92696 0.84248 0.87839 0.73855 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.15 101.05 0.92 -0.49 16 2 S -0.14 -2.01 22.56 -107.50 -2.43 -4.43 16 3 C -0.11 -1.89 6.11 -39.03 -0.24 -2.12 16 4 C -0.12 -2.13 9.36 -39.36 -0.37 -2.50 16 5 C -0.11 -2.13 9.67 -39.62 -0.38 -2.51 16 6 C -0.01 -0.28 5.07 -104.58 -0.53 -0.81 16 7 C 0.05 1.19 4.43 -29.03 -0.13 1.06 16 8 C -0.52 -13.70 8.29 -34.44 -0.29 -13.98 16 9 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C -0.07 -1.32 4.37 -104.66 -0.46 -1.78 16 17 C -0.07 -1.31 5.27 -29.04 -0.15 -1.46 16 18 C 0.49 8.76 7.52 36.01 0.27 9.03 16 19 O -0.51 -10.71 16.79 -18.75 -0.31 -11.03 16 20 O -0.52 -7.69 13.42 -39.27 -0.53 -8.22 16 21 C -0.08 -1.45 9.42 -39.36 -0.37 -1.83 16 22 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 23 H 0.10 0.82 8.14 -51.92 -0.42 0.39 16 24 H 0.08 0.81 7.75 -51.92 -0.40 0.41 16 25 H 0.11 1.62 5.88 -52.49 -0.31 1.31 16 26 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.03 0.79 8.05 -51.93 -0.42 0.38 16 28 H 0.03 0.76 6.40 -51.93 -0.33 0.43 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.14 2.73 6.40 -51.93 -0.33 2.40 16 31 H 0.10 1.45 8.05 -51.93 -0.42 1.03 16 32 H 0.40 4.13 9.10 45.56 0.41 4.54 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -31.57 300.75 -7.85 -39.42 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.01 Total: 4.56 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.82 Total: -15.82 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.74 Total: -24.69 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.84 Total: -19.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.43 Total: -4.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.57 -7.85 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396095649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.337 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds