Wall clock time and date at job start Mon Mar 30 2020 06:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76208 * 102.99657 * 2 1 4 4 C 1.38998 * 120.07989 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.91403 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.08491 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.92215 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47214 * 265.02725 * 7 6 5 9 9 H 1.07991 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99809 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00143 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99889 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47423 * 89.99447 * 12 10 8 14 14 H 1.48499 * 109.46889 * 209.99639 * 12 10 8 15 15 H 1.48502 * 109.46597 * 329.99641 * 12 10 8 16 16 C 1.38282 * 120.16154 * 359.97438 * 6 5 4 17 17 C 1.50697 * 119.96288 * 179.97438 * 16 6 5 18 18 C 1.50700 * 109.47266 * 84.99587 * 17 16 6 19 19 O 1.20822 * 119.99958 * 0.02562 * 18 17 16 20 20 O 1.34234 * 120.00068 * 180.02562 * 18 17 16 21 21 C 1.38104 * 120.08187 * 0.25107 * 16 6 5 22 22 H 1.08994 * 109.47626 * 60.00029 * 1 2 3 23 23 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47455 * 299.99881 * 1 2 3 25 25 H 1.07994 * 120.04055 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.95098 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46781 * 25.02366 * 7 6 5 28 28 H 1.08996 * 109.47329 * 145.02529 * 7 6 5 29 29 H 0.96996 * 119.99773 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.47205 * 324.99681 * 17 16 6 31 31 H 1.08997 * 109.47395 * 205.00173 * 17 16 6 32 32 H 0.96698 * 117.00153 * 179.97438 * 20 18 17 33 33 H 1.07994 * 120.04266 * 179.74909 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1949 2.6663 0.0005 5 6 1.5093 4.0106 0.0000 6 6 2.8326 4.4132 -0.0016 7 6 3.1716 5.8816 -0.0028 8 6 3.4031 6.3426 -1.4188 9 1 3.3141 5.6423 -2.2360 10 6 3.7296 7.6582 -1.6707 11 7 3.8384 8.5110 -0.6754 12 14 4.0158 8.2299 -3.4259 13 1 2.7327 8.6956 -4.0104 14 1 4.9954 9.3460 -3.4294 15 1 4.5471 7.1023 -4.2332 16 6 3.8453 3.4716 -0.0021 17 6 5.2855 3.9152 -0.0045 18 6 5.7310 4.1828 1.4101 19 8 4.9585 4.0286 2.3262 20 8 6.9862 4.5925 1.6523 21 6 3.5385 2.1251 -0.0063 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.1616 2.3526 0.0014 26 1 0.7209 4.7487 0.0008 27 1 2.3464 6.4453 0.4325 28 1 4.0744 6.0465 0.5852 29 1 4.0684 9.4365 -0.8527 30 1 5.3841 4.8262 -0.5949 31 1 5.9063 3.1318 -0.4389 32 1 7.2255 4.7517 2.5756 33 1 4.3299 1.3903 -0.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396095649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:39 Heat of formation + Delta-G solvation = -102.579915 kcal Electronic energy + Delta-G solvation = -17698.375355 eV Core-core repulsion = 14813.736069 eV Total energy + Delta-G solvation = -2884.639286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45085 -40.03683 -37.04290 -35.58831 -34.06725 -32.91165 -30.21637 -29.47749 -28.36627 -25.38519 -23.72818 -22.56267 -21.42839 -19.09693 -18.49151 -18.23333 -17.31298 -17.21871 -16.90158 -16.24814 -16.03052 -15.43134 -14.73866 -14.57752 -14.44684 -14.21078 -14.01157 -13.59921 -13.50140 -13.29344 -13.13572 -12.81258 -12.64067 -12.48551 -12.35685 -12.01112 -11.62564 -11.61071 -11.50981 -11.07685 -10.60215 -10.26355 -9.76035 -8.32486 -8.08619 -6.33135 0.31809 0.43538 0.65623 1.27317 1.42696 1.43066 1.54224 1.54495 2.21255 2.40862 2.91777 3.12032 3.66847 3.94635 4.11487 4.28377 4.30422 4.32809 4.40865 4.53694 4.59848 4.75279 4.88051 4.94688 5.02173 5.23030 5.34299 5.35423 5.49774 5.63869 5.74781 5.95460 6.00483 6.17930 6.79908 7.04670 7.36229 8.90016 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.006439 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.068944 B = 4347.350002 C = 5433.581563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.142 6.142 3 C -0.112 4.112 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.050 4.050 7 C 0.062 3.938 8 C -0.522 4.522 9 H 0.060 0.940 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.962 3.038 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.260 1.260 16 C -0.074 4.074 17 C -0.075 4.075 18 C 0.490 3.510 19 O -0.546 6.546 20 O -0.511 6.511 21 C -0.089 4.089 22 H 0.090 0.910 23 H 0.130 0.870 24 H 0.088 0.912 25 H 0.147 0.853 26 H 0.121 0.879 27 H -0.005 1.005 28 H 0.005 0.995 29 H 0.265 0.735 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.424 0.576 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -14.758 0.607 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.098 5.902 3 C -0.224 4.224 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.052 4.052 7 C 0.025 3.975 8 C -0.560 4.560 9 H 0.078 0.922 10 C -0.189 4.189 11 N -0.569 5.569 12 Si 0.786 3.214 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.184 1.184 16 C -0.076 4.076 17 C -0.112 4.112 18 C 0.334 3.666 19 O -0.437 6.437 20 O -0.324 6.324 21 C -0.112 4.112 22 H 0.109 0.891 23 H 0.148 0.852 24 H 0.107 0.893 25 H 0.164 0.836 26 H 0.139 0.861 27 H 0.013 0.987 28 H 0.023 0.977 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.161 0.839 32 H 0.285 0.715 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.663 -15.751 0.494 15.773 hybrid contribution -0.580 2.269 0.124 2.346 sum -1.243 -13.482 0.617 13.553 Atomic orbital electron populations 1.23752 0.91872 1.08477 1.06311 1.85167 1.09742 1.01780 1.93464 1.21659 0.96281 0.97381 1.07085 1.21299 0.99127 0.92127 1.01932 1.21045 0.95852 0.96065 1.01274 1.20350 0.93615 0.96670 0.94582 1.18065 0.95352 0.87475 0.96582 1.21282 1.47540 0.94826 0.92345 0.92168 1.25883 0.94854 0.96795 1.01376 1.70094 1.48961 1.04544 1.33258 0.85491 0.78094 0.78231 0.79568 1.20138 1.20733 1.18419 1.19114 0.93678 0.92782 1.01994 1.20340 0.93707 1.06399 0.90780 1.23506 0.79156 0.71496 0.92459 1.90685 1.54974 1.50153 1.47876 1.84495 1.30766 1.79024 1.38156 1.20705 0.95319 0.94526 1.00601 0.89116 0.85212 0.89297 0.83564 0.86102 0.98679 0.97677 0.92617 0.86564 0.83930 0.71457 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.15 113.37 1.04 -1.19 16 2 S -0.14 -3.49 22.56 -56.49 -1.27 -4.77 16 3 C -0.11 -3.59 6.11 22.62 0.14 -3.45 16 4 C -0.12 -3.97 9.36 22.41 0.21 -3.76 16 5 C -0.12 -4.87 9.67 22.25 0.22 -4.66 16 6 C -0.05 -2.24 5.07 -19.84 -0.10 -2.34 16 7 C 0.06 3.29 4.43 29.10 0.13 3.42 16 8 C -0.52 -28.52 8.29 25.60 0.21 -28.31 16 9 H 0.06 3.21 7.74 -2.92 -0.02 3.19 16 10 C 0.01 0.53 5.46 84.65 0.46 0.99 16 11 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 12 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 16 C -0.07 -2.89 4.37 -19.89 -0.09 -2.98 16 17 C -0.08 -2.65 5.27 29.10 0.15 -2.50 16 18 C 0.49 17.75 7.52 71.24 0.54 18.29 16 19 O -0.55 -23.33 16.79 21.98 0.37 -22.96 16 20 O -0.51 -14.75 13.42 -51.46 -0.69 -15.44 16 21 C -0.09 -3.01 9.42 22.41 0.21 -2.80 16 22 H 0.09 1.40 7.75 -2.39 -0.02 1.38 16 23 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.40 7.75 -2.39 -0.02 1.38 16 25 H 0.15 3.72 5.88 -2.91 -0.02 3.70 16 26 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 27 H -0.01 -0.30 8.05 -2.39 -0.02 -0.32 16 28 H 0.01 0.28 6.40 -2.39 -0.02 0.27 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.12 4.69 6.40 -2.38 -0.02 4.68 16 31 H 0.14 3.75 8.05 -2.39 -0.02 3.73 16 32 H 0.42 8.27 9.10 -74.06 -0.67 7.60 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -70.03 300.75 4.30 -65.74 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.46 Total: 16.44 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.12 Total: -29.28 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.58 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.32 Total: -38.40 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.27 Total: -4.77 kcal Total: -70.03 4.30 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396095649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.842 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds