Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76202 * 103.00026 * 2 1 4 4 C 1.38991 * 120.07875 * 269.98187 * 3 2 1 5 5 C 1.50705 * 120.04476 * 359.97438 * 4 3 2 6 6 C 1.50695 * 109.46762 * 85.00436 * 5 4 3 7 7 H 1.08004 * 120.00582 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00007 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99671 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00182 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47050 * 89.99813 * 10 8 6 12 12 H 1.48496 * 109.47398 * 209.99719 * 10 8 6 13 13 H 1.48504 * 109.47408 * 330.00275 * 10 8 6 14 14 C 1.38065 * 119.91773 * 180.02562 * 4 3 2 15 15 C 1.38326 * 120.07999 * 359.97438 * 14 4 3 16 16 C 1.38285 * 120.15908 * 359.97438 * 15 14 4 17 17 C 1.38095 * 120.08172 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.04396 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.46947 * 265.00233 * 18 17 16 20 20 O 1.20825 * 120.00164 * 359.97438 * 19 18 17 21 21 O 1.34227 * 119.99827 * 179.97438 * 19 18 17 22 22 H 1.08992 * 109.47241 * 300.00158 * 1 2 3 23 23 H 1.08998 * 109.46766 * 59.99927 * 1 2 3 24 24 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47343 * 205.00542 * 5 4 3 26 26 H 1.08997 * 109.46659 * 325.00722 * 5 4 3 27 27 H 0.97004 * 120.00148 * 179.97438 * 9 8 6 28 28 H 1.07997 * 119.96351 * 179.97438 * 14 4 3 29 29 H 1.08002 * 119.92002 * 180.27619 * 15 14 4 30 30 H 1.08004 * 119.95505 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.46628 * 24.99497 * 18 17 16 32 32 H 1.08994 * 109.47299 * 144.99739 * 18 17 16 33 33 H 0.96698 * 117.00254 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 2.3675 2.3955 -1.2027 5 6 2.1996 1.6638 -2.5095 6 6 0.7403 1.6333 -2.8841 7 1 0.0076 2.0977 -2.2406 8 6 0.3403 1.0126 -4.0485 9 7 1.2323 0.4476 -4.8323 10 14 -1.4687 0.9741 -4.5125 11 1 -1.7954 2.1696 -5.3307 12 1 -1.7527 -0.2548 -5.2963 13 1 -2.2963 0.9771 -3.2795 14 6 2.6786 3.7407 -1.1989 15 6 2.8335 4.4130 0.0001 16 6 2.6769 3.7412 1.1986 17 6 2.3657 2.3958 1.2024 18 6 2.1958 1.6644 2.5091 19 6 3.4941 0.9971 2.8837 20 8 4.4582 1.1040 2.1633 21 8 3.5794 0.2839 4.0176 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.7640 2.1767 -3.2882 26 1 2.5693 0.6438 -2.4048 27 1 0.9509 0.0105 -5.6513 28 1 2.8012 4.2686 -2.1330 29 1 3.0724 5.4663 0.0001 30 1 2.7989 4.2693 2.1328 31 1 1.9135 2.3728 3.2879 32 1 1.4163 0.9098 2.4044 33 1 4.4326 -0.1259 4.2154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396098176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = -77.550018 kcal Electronic energy + Delta-G solvation = -17921.385683 eV Core-core repulsion = 15037.831775 eV Total energy + Delta-G solvation = -2883.553908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19003 -38.65168 -35.97042 -33.85372 -32.53891 -31.16893 -28.18327 -27.97678 -27.00134 -23.41089 -22.60023 -21.32333 -19.67036 -17.94952 -16.83387 -16.38367 -16.25301 -15.98761 -15.06856 -14.82315 -14.47556 -13.92289 -13.24209 -13.04718 -12.75120 -12.70644 -12.53058 -12.31944 -12.02219 -11.78221 -11.38763 -11.23234 -11.10901 -10.95900 -10.58836 -10.50103 -10.40609 -9.82476 -9.58588 -9.37260 -8.43247 -8.24021 -7.90029 -6.84310 -6.04755 -4.07763 1.48256 1.90107 2.40913 2.52716 3.25150 3.26381 3.33586 3.34358 3.36022 4.29625 4.45950 4.78525 5.06995 5.30144 5.44553 5.45858 5.53626 5.60868 5.74219 5.85303 5.90902 6.14148 6.29331 6.52844 6.55369 6.61260 6.81986 6.92125 7.02169 7.43590 7.61383 7.82409 7.91782 8.04521 8.29067 8.94585 9.53571 11.05508 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.006561 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.822297 B = 4266.593797 C = 4777.259645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.148 6.148 3 C -0.104 4.104 4 C 0.011 3.989 5 C 0.041 3.959 6 C -0.504 4.504 7 H 0.052 0.948 8 C 0.064 3.936 9 N -0.887 5.887 10 Si 0.888 3.112 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C -0.130 4.130 15 C -0.098 4.098 16 C -0.143 4.143 17 C -0.043 4.043 18 C -0.071 4.071 19 C 0.484 3.516 20 O -0.500 6.500 21 O -0.522 6.522 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.091 0.909 25 H 0.027 0.973 26 H 0.053 0.947 27 H 0.262 0.738 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 2.628 14.972 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.085 5.915 3 C -0.215 4.215 4 C 0.008 3.992 5 C 0.003 3.997 6 C -0.543 4.543 7 H 0.071 0.929 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.716 3.284 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C -0.150 4.150 15 C -0.116 4.116 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.109 4.109 19 C 0.326 3.674 20 O -0.386 6.386 21 O -0.335 6.335 22 H 0.081 0.919 23 H 0.120 0.880 24 H 0.110 0.890 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.337 1.779 14.499 14.669 hybrid contribution -1.226 0.902 -0.322 1.555 sum 0.111 2.681 14.176 14.428 Atomic orbital electron populations 1.23667 0.95307 1.05667 1.05823 1.84889 1.06512 1.03252 1.96887 1.21343 1.08742 0.97208 0.94237 1.21071 0.87921 0.93441 0.96749 1.18569 0.97737 0.96582 0.86763 1.20824 0.91310 1.35970 1.06146 0.92948 1.24924 0.97219 0.95344 0.96319 1.69946 1.33206 1.36367 1.13013 0.86663 0.85496 0.77605 0.78665 1.20647 1.21085 1.19900 1.21181 1.01487 0.94485 0.97809 1.21142 0.98635 0.99296 0.92577 1.20687 1.04096 0.93547 0.97898 1.19379 0.99525 0.93495 0.92215 1.20283 0.94048 1.00438 0.96108 1.23244 0.90733 0.75791 0.77649 1.90753 1.39101 1.58079 1.50657 1.84516 1.42831 1.63802 1.42303 0.91907 0.88000 0.88983 0.95468 0.92901 0.92823 0.85854 0.86447 0.86650 0.87468 0.86195 0.73547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 10.72 101.05 1.08 -1.31 16 2 S -0.15 -2.93 18.92 -107.50 -2.03 -4.97 16 3 C -0.10 -2.11 5.70 -39.04 -0.22 -2.34 16 4 C 0.01 0.23 5.09 -104.40 -0.53 -0.30 16 5 C 0.04 1.04 4.57 -29.03 -0.13 0.91 16 6 C -0.50 -13.49 7.85 -34.44 -0.27 -13.76 16 7 H 0.05 1.39 7.11 -52.48 -0.37 1.01 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.78 13.28 55.43 0.74 -25.05 16 10 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 C -0.13 -2.52 9.67 -39.61 -0.38 -2.90 16 15 C -0.10 -1.60 10.04 -39.53 -0.40 -1.99 16 16 C -0.14 -2.23 9.67 -39.62 -0.38 -2.62 16 17 C -0.04 -0.73 4.39 -104.41 -0.46 -1.19 16 18 C -0.07 -0.96 5.41 -29.03 -0.16 -1.11 16 19 C 0.48 6.96 8.31 36.01 0.30 7.26 16 20 O -0.50 -9.14 16.79 -18.75 -0.31 -9.46 16 21 O -0.52 -5.65 13.42 -39.25 -0.53 -6.18 16 22 H 0.06 0.92 8.03 -51.93 -0.42 0.51 16 23 H 0.10 2.08 6.13 -51.93 -0.32 1.76 16 24 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 25 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 26 H 0.05 1.47 7.02 -51.93 -0.36 1.10 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.11 1.08 8.05 -51.93 -0.42 0.66 16 32 H 0.12 1.55 6.90 -51.93 -0.36 1.19 16 33 H 0.41 2.74 9.10 45.56 0.41 3.15 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -32.36 301.18 -7.35 -39.71 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.08 Total: 3.21 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.65 Total: -17.70 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.84 Total: -15.64 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.03 Total: -4.97 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.36 -7.35 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396098176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.842 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds