Wall clock time and date at job start Mon Mar 30 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76202 * 103.00026 * 2 1 4 4 C 1.38991 * 120.07875 * 269.98187 * 3 2 1 5 5 C 1.50705 * 120.04476 * 359.97438 * 4 3 2 6 6 C 1.50695 * 109.46762 * 85.00436 * 5 4 3 7 7 H 1.08004 * 120.00582 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00007 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99671 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00182 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47050 * 89.99813 * 10 8 6 12 12 H 1.48496 * 109.47398 * 209.99719 * 10 8 6 13 13 H 1.48504 * 109.47408 * 330.00275 * 10 8 6 14 14 C 1.38065 * 119.91773 * 180.02562 * 4 3 2 15 15 C 1.38326 * 120.07999 * 359.97438 * 14 4 3 16 16 C 1.38285 * 120.15908 * 359.97438 * 15 14 4 17 17 C 1.38095 * 120.08172 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.04396 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.46947 * 265.00233 * 18 17 16 20 20 O 1.20825 * 120.00164 * 359.97438 * 19 18 17 21 21 O 1.34227 * 119.99827 * 179.97438 * 19 18 17 22 22 H 1.08992 * 109.47241 * 300.00158 * 1 2 3 23 23 H 1.08998 * 109.46766 * 59.99927 * 1 2 3 24 24 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47343 * 205.00542 * 5 4 3 26 26 H 1.08997 * 109.46659 * 325.00722 * 5 4 3 27 27 H 0.97004 * 120.00148 * 179.97438 * 9 8 6 28 28 H 1.07997 * 119.96351 * 179.97438 * 14 4 3 29 29 H 1.08002 * 119.92002 * 180.27619 * 15 14 4 30 30 H 1.08004 * 119.95505 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.46628 * 24.99497 * 18 17 16 32 32 H 1.08994 * 109.47299 * 144.99739 * 18 17 16 33 33 H 0.96698 * 117.00254 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 2.3675 2.3955 -1.2027 5 6 2.1996 1.6638 -2.5095 6 6 0.7403 1.6333 -2.8841 7 1 0.0076 2.0977 -2.2406 8 6 0.3403 1.0126 -4.0485 9 7 1.2323 0.4476 -4.8323 10 14 -1.4687 0.9741 -4.5125 11 1 -1.7954 2.1696 -5.3307 12 1 -1.7527 -0.2548 -5.2963 13 1 -2.2963 0.9771 -3.2795 14 6 2.6786 3.7407 -1.1989 15 6 2.8335 4.4130 0.0001 16 6 2.6769 3.7412 1.1986 17 6 2.3657 2.3958 1.2024 18 6 2.1958 1.6644 2.5091 19 6 3.4941 0.9971 2.8837 20 8 4.4582 1.1040 2.1633 21 8 3.5794 0.2839 4.0176 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.7640 2.1767 -3.2882 26 1 2.5693 0.6438 -2.4048 27 1 0.9509 0.0105 -5.6513 28 1 2.8012 4.2686 -2.1330 29 1 3.0724 5.4663 0.0001 30 1 2.7989 4.2693 2.1328 31 1 1.9135 2.3728 3.2879 32 1 1.4163 0.9098 2.4044 33 1 4.4326 -0.1259 4.2154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396098176.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:41 Heat of formation + Delta-G solvation = -97.741780 kcal Electronic energy + Delta-G solvation = -17922.261263 eV Core-core repulsion = 15037.831775 eV Total energy + Delta-G solvation = -2884.429488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31505 -39.99604 -37.01330 -35.65513 -34.06353 -32.78562 -29.58064 -29.42408 -28.64708 -25.30875 -23.82476 -22.68902 -21.06682 -18.99327 -18.51918 -18.17996 -17.36636 -17.18468 -16.71702 -16.15843 -16.10328 -15.34433 -14.64624 -14.52135 -14.19796 -14.14756 -14.02189 -13.63747 -13.48423 -13.25625 -12.98828 -12.77532 -12.59939 -12.42542 -12.31267 -12.16783 -11.60498 -11.54253 -11.46344 -11.04548 -10.56662 -9.61612 -9.43202 -8.39099 -8.15534 -6.26193 0.11110 0.49505 1.05782 1.34364 1.39166 1.39505 1.49793 1.91977 2.25199 2.40810 2.98737 3.16655 3.61638 3.96597 4.20393 4.33825 4.40935 4.46629 4.49757 4.56318 4.61819 4.72534 4.93520 5.06561 5.12609 5.26568 5.43186 5.50474 5.56264 5.70933 5.77747 5.94503 6.06242 6.21304 6.83149 7.09950 7.39432 8.95094 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.006561 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.822297 B = 4266.593797 C = 4777.259645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.188 6.188 3 C -0.118 4.118 4 C -0.031 4.031 5 C 0.054 3.946 6 C -0.502 4.502 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.955 3.045 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.260 1.260 14 C -0.149 4.149 15 C -0.089 4.089 16 C -0.132 4.132 17 C -0.044 4.044 18 C -0.071 4.071 19 C 0.491 3.509 20 O -0.548 6.548 21 O -0.509 6.509 22 H 0.094 0.906 23 H 0.069 0.931 24 H 0.110 0.890 25 H -0.006 1.006 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.118 0.882 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 3.966 18.071 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.044 5.956 3 C -0.229 4.229 4 C -0.033 4.033 5 C 0.016 3.984 6 C -0.540 4.540 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.779 3.221 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.184 1.184 14 C -0.169 4.169 15 C -0.107 4.107 16 C -0.151 4.151 17 C -0.047 4.047 18 C -0.109 4.109 19 C 0.335 3.665 20 O -0.438 6.438 21 O -0.323 6.323 22 H 0.113 0.887 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.012 0.988 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.175 0.825 30 H 0.180 0.820 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.074 3.111 17.639 17.911 hybrid contribution -0.717 0.497 -1.163 1.454 sum -0.791 3.608 16.476 16.885 Atomic orbital electron populations 1.23641 0.93024 1.06877 1.05681 1.84919 1.09109 1.04608 1.96915 1.21438 1.09684 0.96835 0.94929 1.20796 0.92008 0.94840 0.95688 1.18223 0.96850 0.94862 0.88433 1.21025 0.91874 1.35140 1.05952 0.92892 1.25789 1.01749 0.94980 0.96302 1.70093 1.35533 1.37676 1.13618 0.85606 0.80142 0.77583 0.78742 1.20095 1.20924 1.18356 1.21263 1.02475 0.93667 0.99446 1.21545 0.96708 1.01049 0.91367 1.21276 1.01309 0.93032 0.99491 1.19779 0.98062 0.94368 0.92533 1.20393 0.93707 1.01389 0.95377 1.23364 0.90290 0.75246 0.77590 1.90755 1.40800 1.60021 1.52267 1.84464 1.44279 1.63002 1.40531 0.88746 0.91184 0.87141 0.98806 0.96205 0.92837 0.86353 0.82487 0.82013 0.82987 0.85619 0.71346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 10.72 113.37 1.22 -3.03 16 2 S -0.19 -7.55 18.92 -56.49 -1.07 -8.62 16 3 C -0.12 -4.78 5.70 22.62 0.13 -4.65 16 4 C -0.03 -1.42 5.09 -19.72 -0.10 -1.52 16 5 C 0.05 2.94 4.57 29.10 0.13 3.07 16 6 C -0.50 -27.89 7.85 25.60 0.20 -27.69 16 7 H 0.05 2.88 7.11 -2.91 -0.02 2.85 16 8 C 0.01 0.56 5.46 84.66 0.46 1.02 16 9 N -0.93 -56.40 13.28 21.45 0.28 -56.11 16 10 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 14 C -0.15 -5.81 9.67 22.25 0.22 -5.60 16 15 C -0.09 -2.63 10.04 22.30 0.22 -2.41 16 16 C -0.13 -3.59 9.67 22.25 0.22 -3.37 16 17 C -0.04 -1.40 4.39 -19.72 -0.09 -1.49 16 18 C -0.07 -1.65 5.41 29.10 0.16 -1.50 16 19 C 0.49 12.79 8.31 71.24 0.59 13.39 16 20 O -0.55 -19.40 16.79 21.97 0.37 -19.03 16 21 O -0.51 -9.36 13.42 -51.39 -0.69 -10.05 16 22 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 23 H 0.07 2.85 6.13 -2.39 -0.01 2.84 16 24 H 0.11 3.26 8.14 -2.39 -0.02 3.25 16 25 H -0.01 -0.38 8.05 -2.39 -0.02 -0.40 16 26 H 0.02 1.19 7.02 -2.39 -0.02 1.17 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 29 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.15 2.15 8.05 -2.39 -0.02 2.13 16 32 H 0.13 2.82 6.90 -2.39 -0.02 2.81 16 33 H 0.43 4.52 9.10 -74.06 -0.67 3.84 16 Total: -1.00 -74.71 301.18 4.74 -69.97 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.46 Total: 12.01 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 3.36 Total: -33.77 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.11 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.32 Total: -29.08 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.07 Total: -8.62 kcal Total: -74.71 4.74 -69.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396098176.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.769 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds