Wall clock time and date at job start Mon Mar 30 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76200 * 102.99607 * 2 1 4 4 C 1.38995 * 120.08389 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.92185 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.95856 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47158 * 89.99863 * 6 5 4 8 8 H 1.07992 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99717 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00340 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99776 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47336 * 90.00077 * 11 9 7 13 13 H 1.48497 * 109.46951 * 210.00022 * 11 9 7 14 14 H 1.48499 * 109.46956 * 329.99726 * 11 9 7 15 15 C 1.38326 * 120.07761 * 359.97411 * 5 4 3 16 16 C 1.38283 * 120.16448 * 359.79311 * 15 5 4 17 17 C 1.38108 * 120.07397 * 0.46302 * 16 15 5 18 18 C 1.50703 * 120.03624 * 179.79199 * 17 16 15 19 19 C 1.50701 * 109.47064 * 264.72211 * 18 17 16 20 20 O 1.20826 * 119.99939 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00046 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.47133 * 60.00176 * 1 2 3 23 23 H 1.09004 * 109.46745 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46901 * 299.99755 * 1 2 3 25 25 H 1.08004 * 120.03854 * 359.97438 * 4 3 2 26 26 H 1.09005 * 109.46497 * 209.99870 * 6 5 4 27 27 H 1.08993 * 109.46816 * 329.99390 * 6 5 4 28 28 H 0.96996 * 120.00060 * 179.97438 * 10 9 7 29 29 H 1.08002 * 119.91566 * 180.02562 * 15 5 4 30 30 H 1.07999 * 119.96192 * 180.23259 * 16 15 5 31 31 H 1.09002 * 109.47152 * 144.72304 * 18 17 16 32 32 H 1.09001 * 109.46980 * 24.72404 * 18 17 16 33 33 H 0.96691 * 117.00026 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 0.4093 5.0406 -0.0011 7 6 0.0430 5.3844 1.4197 8 1 0.5553 4.9047 2.2405 9 6 -0.9460 6.3114 1.6716 10 7 -1.5695 6.8959 0.6720 11 14 -1.3996 6.7380 3.4327 12 1 -0.5626 7.8727 3.8985 13 1 -2.8328 7.1216 3.4957 14 1 -1.1641 5.5588 4.3041 15 6 2.8328 4.4132 -0.0005 16 6 3.8455 3.4716 0.0049 17 6 3.5385 2.1250 0.0001 18 6 4.6429 1.0996 0.0012 19 6 4.9272 0.6659 -1.4138 20 8 4.2979 1.1411 -2.3292 21 8 5.8801 -0.2475 -1.6572 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.1616 2.3526 -0.0014 26 1 0.7523 5.9384 -0.5153 27 1 -0.4642 4.6391 -0.5146 28 1 -2.2655 7.5478 0.8492 29 1 3.0756 5.4655 -0.0005 30 1 4.8776 3.7895 0.0091 31 1 4.3362 0.2359 0.5913 32 1 5.5428 1.5353 0.4355 33 1 6.0265 -0.4938 -2.5807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396102841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:45 Heat of formation + Delta-G solvation = -83.552086 kcal Electronic energy + Delta-G solvation = -17398.936461 eV Core-core repulsion = 14515.122284 eV Total energy + Delta-G solvation = -2883.814177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26340 -38.67159 -36.06036 -34.02411 -32.40654 -30.84146 -29.53167 -28.54696 -26.24248 -23.31512 -22.43238 -21.55540 -20.18382 -18.04052 -16.70209 -16.42554 -16.26443 -16.02810 -15.38534 -14.84679 -14.56973 -14.00443 -13.69608 -13.63859 -13.15921 -12.57473 -12.47580 -12.43700 -12.17063 -11.76352 -11.46809 -11.38665 -11.29489 -10.85936 -10.75914 -10.48591 -10.47173 -10.08903 -9.62810 -9.49341 -9.14020 -8.47729 -7.98271 -7.09513 -6.09654 -4.14172 1.71521 1.78824 1.87269 2.31186 2.61638 3.18042 3.26859 3.33415 3.37253 4.26677 4.44880 4.76417 4.99899 5.19151 5.24947 5.25185 5.38258 5.46082 5.50536 5.78009 5.82647 5.98478 6.07620 6.27985 6.49671 6.56315 6.76559 6.96287 7.06343 7.40986 7.56492 7.74749 7.85796 7.95809 8.24429 8.91004 9.50075 11.00231 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.005010 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.325377 B = 5587.121043 C = 6092.959376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.145 6.145 3 C -0.063 4.063 4 C -0.133 4.133 5 C -0.008 4.008 6 C 0.047 3.953 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.124 4.124 16 C -0.090 4.090 17 C -0.096 4.096 18 C -0.065 4.065 19 C 0.477 3.523 20 O -0.497 6.497 21 O -0.523 6.523 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -13.414 -1.907 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.096 5.904 3 C -0.176 4.176 4 C -0.156 4.156 5 C -0.010 4.010 6 C 0.010 3.990 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.102 4.102 18 C -0.103 4.103 19 C 0.318 3.682 20 O -0.383 6.383 21 O -0.335 6.335 22 H 0.104 0.896 23 H 0.120 0.880 24 H 0.106 0.894 25 H 0.140 0.860 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 10.968 -14.101 -1.794 17.954 hybrid contribution -1.123 1.294 0.320 1.743 sum 9.845 -12.807 -1.474 16.221 Atomic orbital electron populations 1.23642 0.94425 1.06408 1.06320 1.84860 1.07264 1.05078 1.93182 1.21338 0.95835 0.95328 1.05061 1.21051 0.97698 0.92832 1.04028 1.20639 0.95927 0.94482 0.89988 1.18396 0.90847 0.91869 0.97926 1.21025 1.19471 1.23380 0.91278 0.92401 1.25006 0.96020 0.95902 0.97296 1.69956 1.24707 1.27763 1.30744 0.86528 0.77651 0.78843 0.84667 1.20496 1.21128 1.19788 1.21106 0.92304 0.99419 1.01610 1.20806 0.98956 0.91574 0.99585 1.18516 0.90771 0.93393 1.07472 1.20145 0.99527 0.99788 0.90841 1.23460 0.76177 0.75754 0.92774 1.90755 1.47629 1.53272 1.46612 1.84529 1.55226 1.57330 1.36458 0.89636 0.87951 0.89376 0.86003 0.94979 0.95301 0.92761 0.85844 0.86395 0.86979 0.86952 0.73559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.15 101.05 0.92 -0.84 16 2 S -0.15 -2.15 20.86 -107.50 -2.24 -4.39 16 3 C -0.06 -1.13 6.11 -39.04 -0.24 -1.37 16 4 C -0.13 -2.66 9.02 -39.37 -0.35 -3.02 16 5 C -0.01 -0.18 5.07 -104.65 -0.53 -0.71 16 6 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 7 C -0.51 -14.15 9.09 -34.44 -0.31 -14.46 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 11 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C -0.12 -2.42 9.70 -39.53 -0.38 -2.80 16 16 C -0.09 -1.49 9.67 -39.61 -0.38 -1.88 16 17 C -0.10 -1.57 4.39 -104.40 -0.46 -2.03 16 18 C -0.07 -0.83 5.41 -29.03 -0.16 -0.98 16 19 C 0.48 6.38 8.31 36.01 0.30 6.68 16 20 O -0.50 -8.54 16.79 -18.75 -0.31 -8.85 16 21 O -0.52 -5.22 13.42 -39.26 -0.53 -5.75 16 22 H 0.08 1.10 7.75 -51.92 -0.40 0.70 16 23 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 24 H 0.09 1.14 7.75 -51.93 -0.40 0.74 16 25 H 0.12 2.36 5.88 -52.48 -0.31 2.05 16 26 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.32 7.02 -51.93 -0.36 0.96 16 32 H 0.11 1.10 8.05 -51.93 -0.42 0.68 16 33 H 0.41 2.38 9.10 45.56 0.41 2.80 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -32.56 303.72 -7.76 -40.32 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.13 Total: 2.02 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.84 Total: -18.81 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.84 Total: -14.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.24 Total: -4.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.56 -7.76 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396102841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.230 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds