Wall clock time and date at job start Mon Mar 30 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76200 * 102.99607 * 2 1 4 4 C 1.38995 * 120.08389 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.92185 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.95856 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47158 * 89.99863 * 6 5 4 8 8 H 1.07992 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99717 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00340 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99776 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47336 * 90.00077 * 11 9 7 13 13 H 1.48497 * 109.46951 * 210.00022 * 11 9 7 14 14 H 1.48499 * 109.46956 * 329.99726 * 11 9 7 15 15 C 1.38326 * 120.07761 * 359.97411 * 5 4 3 16 16 C 1.38283 * 120.16448 * 359.79311 * 15 5 4 17 17 C 1.38108 * 120.07397 * 0.46302 * 16 15 5 18 18 C 1.50703 * 120.03624 * 179.79199 * 17 16 15 19 19 C 1.50701 * 109.47064 * 264.72211 * 18 17 16 20 20 O 1.20826 * 119.99939 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00046 * 179.97438 * 19 18 17 22 22 H 1.09001 * 109.47133 * 60.00176 * 1 2 3 23 23 H 1.09004 * 109.46745 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46901 * 299.99755 * 1 2 3 25 25 H 1.08004 * 120.03854 * 359.97438 * 4 3 2 26 26 H 1.09005 * 109.46497 * 209.99870 * 6 5 4 27 27 H 1.08993 * 109.46816 * 329.99390 * 6 5 4 28 28 H 0.96996 * 120.00060 * 179.97438 * 10 9 7 29 29 H 1.08002 * 119.91566 * 180.02562 * 15 5 4 30 30 H 1.07999 * 119.96192 * 180.23259 * 16 15 5 31 31 H 1.09002 * 109.47152 * 144.72304 * 18 17 16 32 32 H 1.09001 * 109.46980 * 24.72404 * 18 17 16 33 33 H 0.96691 * 117.00026 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0106 -0.0011 6 6 0.4093 5.0406 -0.0011 7 6 0.0430 5.3844 1.4197 8 1 0.5553 4.9047 2.2405 9 6 -0.9460 6.3114 1.6716 10 7 -1.5695 6.8959 0.6720 11 14 -1.3996 6.7380 3.4327 12 1 -0.5626 7.8727 3.8985 13 1 -2.8328 7.1216 3.4957 14 1 -1.1641 5.5588 4.3041 15 6 2.8328 4.4132 -0.0005 16 6 3.8455 3.4716 0.0049 17 6 3.5385 2.1250 0.0001 18 6 4.6429 1.0996 0.0012 19 6 4.9272 0.6659 -1.4138 20 8 4.2979 1.1411 -2.3292 21 8 5.8801 -0.2475 -1.6572 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.1616 2.3526 -0.0014 26 1 0.7523 5.9384 -0.5153 27 1 -0.4642 4.6391 -0.5146 28 1 -2.2655 7.5478 0.8492 29 1 3.0756 5.4655 -0.0005 30 1 4.8776 3.7895 0.0091 31 1 4.3362 0.2359 0.5913 32 1 5.5428 1.5353 0.4355 33 1 6.0265 -0.4938 -2.5807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396102841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:44 Heat of formation + Delta-G solvation = -103.371481 kcal Electronic energy + Delta-G solvation = -17399.795894 eV Core-core repulsion = 14515.122284 eV Total energy + Delta-G solvation = -2884.673611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33043 -40.03351 -37.03690 -35.76966 -34.14202 -32.22601 -31.12080 -29.63363 -27.92197 -25.07515 -23.85635 -22.84918 -21.51611 -19.01038 -18.56254 -17.92136 -17.42041 -17.19249 -16.75786 -16.38994 -16.14305 -15.36116 -14.90735 -14.81026 -14.48298 -14.14789 -14.06479 -13.64183 -13.31973 -13.22509 -13.06087 -13.00134 -12.60008 -12.47982 -12.42242 -12.11010 -11.67421 -11.65824 -11.52712 -11.08080 -10.63379 -10.54129 -9.52412 -8.35267 -8.21805 -6.36832 0.30103 0.44424 0.60442 1.31400 1.38993 1.39892 1.41454 1.51415 2.21223 2.38868 2.91405 3.08187 3.59937 3.86393 4.18041 4.20021 4.24788 4.31234 4.47857 4.52977 4.58821 4.63433 4.80509 4.84503 5.10830 5.23293 5.30652 5.36044 5.49716 5.69601 5.70460 5.96619 6.01158 6.16322 6.75351 7.08784 7.32145 8.86721 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.005010 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.325377 B = 5587.121043 C = 6092.959376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.123 6.123 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.042 4.042 6 C 0.057 3.943 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.139 4.139 16 C -0.082 4.082 17 C -0.091 4.091 18 C -0.066 4.066 19 C 0.487 3.513 20 O -0.543 6.543 21 O -0.510 6.510 22 H 0.078 0.922 23 H 0.134 0.866 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.006 0.994 27 H 0.000 1.000 28 H 0.266 0.734 29 H 0.122 0.878 30 H 0.158 0.842 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.687 -15.318 -0.608 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.119 5.881 3 C -0.189 4.189 4 C -0.172 4.172 5 C -0.044 4.044 6 C 0.020 3.980 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.791 3.209 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.159 4.159 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.103 4.103 19 C 0.330 3.670 20 O -0.433 6.433 21 O -0.323 6.323 22 H 0.097 0.903 23 H 0.153 0.847 24 H 0.101 0.899 25 H 0.133 0.867 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.175 0.825 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 12.947 -16.040 -0.500 20.619 hybrid contribution -1.655 1.741 -0.155 2.407 sum 11.292 -14.298 -0.655 18.231 Atomic orbital electron populations 1.23760 0.93149 1.08314 1.05764 1.84672 1.08699 1.02022 1.92702 1.21667 0.96128 0.96989 1.04146 1.21002 0.98287 0.92718 1.05168 1.20348 0.95876 0.94423 0.93752 1.18111 0.91276 0.91976 0.96637 1.21320 1.19657 1.23499 0.92112 0.92627 1.25927 0.95800 0.95636 1.01853 1.70083 1.25328 1.28421 1.33161 0.85423 0.77526 0.78853 0.79140 1.19531 1.20496 1.18964 1.21181 0.92069 1.00256 1.02423 1.21190 1.00039 0.91237 0.97688 1.19023 0.91459 0.94400 1.04828 1.20252 0.99623 0.99401 0.91063 1.23442 0.75805 0.75402 0.92369 1.90763 1.49477 1.55096 1.47940 1.84473 1.53642 1.55903 1.38332 0.90306 0.84732 0.89912 0.86668 0.97560 0.98140 0.92503 0.85954 0.82454 0.85613 0.83197 0.71245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.15 113.37 1.04 -2.39 16 2 S -0.12 -3.40 20.86 -56.49 -1.18 -4.58 16 3 C -0.08 -2.68 6.11 22.62 0.14 -2.54 16 4 C -0.15 -6.13 9.02 22.41 0.20 -5.93 16 5 C -0.04 -1.93 5.07 -19.89 -0.10 -2.03 16 6 C 0.06 3.12 5.10 29.10 0.15 3.26 16 7 C -0.53 -30.25 9.09 25.60 0.23 -30.01 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.01 0.35 5.46 84.65 0.46 0.81 16 10 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 11 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C -0.14 -5.49 9.70 22.30 0.22 -5.28 16 16 C -0.08 -2.60 9.67 22.25 0.22 -2.38 16 17 C -0.09 -2.80 4.39 -19.72 -0.09 -2.89 16 18 C -0.07 -1.42 5.41 29.10 0.16 -1.27 16 19 C 0.49 11.46 8.31 71.24 0.59 12.05 16 20 O -0.54 -17.66 16.79 21.97 0.37 -17.29 16 21 O -0.51 -8.20 13.42 -51.41 -0.69 -8.89 16 22 H 0.08 2.03 7.75 -2.39 -0.02 2.01 16 23 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.08 2.11 7.75 -2.39 -0.02 2.09 16 25 H 0.12 4.72 5.88 -2.91 -0.02 4.70 16 26 H 0.01 0.35 8.09 -2.38 -0.02 0.33 16 27 H 0.00 0.02 8.08 -2.39 -0.02 0.00 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 31 H 0.13 2.44 7.02 -2.39 -0.02 2.43 16 32 H 0.15 2.13 8.05 -2.39 -0.02 2.12 16 33 H 0.43 3.49 9.10 -74.06 -0.67 2.81 16 Total: -1.00 -72.95 303.72 4.48 -68.46 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.46 Total: 10.68 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.21 Total: -38.60 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.32 Total: -26.18 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.18 Total: -4.58 kcal Total: -72.95 4.48 -68.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396102841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.908 kcal (2) G-P(sol) polarization free energy of solvation -72.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds