Wall clock time and date at job start Mon Mar 30 2020 08:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48502 * 109.47077 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47393 * 30.00179 * 3 2 1 6 6 H 1.48501 * 109.47073 * 149.99949 * 3 2 1 7 7 C 1.37880 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00168 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.87361 * 62.39065 * 9 7 2 11 11 C 1.55143 * 110.99071 * 298.55219 * 9 7 2 12 12 C 1.54323 * 103.01703 * 206.25429 * 11 9 7 13 13 N 1.47449 * 107.23272 * 22.28018 * 12 11 9 14 14 C 1.46899 * 110.99787 * 123.26054 * 13 12 11 15 15 C 1.50699 * 109.47269 * 75.61500 * 14 13 12 16 16 C 1.38652 * 120.79216 * 254.92892 * 15 14 13 17 17 C 1.38192 * 119.17497 * 179.72774 * 16 15 14 18 18 N 1.31882 * 120.79619 * 359.97438 * 17 16 15 19 19 C 1.31848 * 121.73499 * 0.02562 * 18 17 16 20 20 C 1.38346 * 120.74515 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.43060 * 180.02562 * 20 19 18 22 22 C 1.47839 * 108.56865 * 0.99356 * 13 12 11 23 23 H 0.96998 * 119.99946 * 0.02562 * 1 2 3 24 24 H 1.08996 * 110.70752 * 87.87358 * 11 9 7 25 25 H 1.09000 * 110.70374 * 324.63410 * 11 9 7 26 26 H 1.08996 * 109.88998 * 262.87925 * 12 11 9 27 27 H 1.08997 * 110.02411 * 141.76146 * 12 11 9 28 28 H 1.09011 * 109.46963 * 315.61401 * 14 13 12 29 29 H 1.09003 * 109.47129 * 195.61667 * 14 13 12 30 30 H 1.07995 * 120.41866 * 359.74498 * 16 15 14 31 31 H 1.08009 * 119.60247 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.62358 * 179.97438 * 19 18 17 33 33 H 1.09001 * 110.37765 * 94.72860 * 22 13 12 34 34 H 1.09002 * 110.37479 * 217.07573 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6477 -2.5993 -0.9028 11 6 0.3741 -2.6346 1.2721 12 6 0.2540 -4.1628 1.4505 13 7 1.3922 -4.7761 0.7416 14 6 2.1864 -5.6157 1.6484 15 6 1.4559 -6.9085 1.9051 16 6 0.8152 -7.1339 3.1139 17 6 0.1505 -8.3292 3.3115 18 7 0.1206 -9.2493 2.3671 19 6 0.7180 -9.0704 1.2054 20 6 1.4030 -7.8991 0.9353 21 17 2.1861 -7.6719 -0.5973 22 6 2.2186 -3.6986 0.1571 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6069 -2.1868 1.1136 25 1 0.8703 -2.1841 2.1317 26 1 -0.6837 -4.5138 1.0197 27 1 0.2946 -4.4193 2.5090 28 1 2.3372 -5.0901 2.5915 29 1 3.1533 -5.8290 1.1927 30 1 0.8351 -6.3845 3.8914 31 1 -0.3506 -8.5122 4.2506 32 1 0.6721 -9.8470 0.4563 33 1 3.0366 -3.4404 0.8296 34 1 2.6070 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397792245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:55 Heat of formation + Delta-G solvation = 28.058378 kcal Electronic energy + Delta-G solvation = -17726.502528 eV Core-core repulsion = 14877.777188 eV Total energy + Delta-G solvation = -2848.725339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -40.34141 -38.06533 -36.46755 -34.07912 -32.48762 -31.08845 -29.93620 -28.28121 -26.08278 -24.10855 -23.56282 -22.05901 -19.89285 -19.64480 -16.95375 -16.72817 -16.36143 -15.94218 -15.05997 -14.83391 -14.49190 -14.04224 -13.91494 -13.36056 -12.76420 -12.53063 -12.24423 -11.94929 -11.88936 -11.54438 -11.09384 -11.06001 -10.94968 -10.81632 -10.58923 -10.30904 -9.68678 -9.60817 -9.59801 -9.25953 -8.92776 -8.88005 -8.43076 -7.71381 -6.05828 -4.09610 0.89788 1.07527 2.17086 3.27545 3.34552 3.37010 3.59239 4.32800 4.37665 4.50253 4.57518 4.83091 4.92592 5.21025 5.28024 5.40154 5.51077 5.66466 5.78015 5.84054 6.04898 6.09849 6.23584 6.43158 6.43559 6.47785 6.79487 7.08568 7.13255 7.59850 7.61403 7.65621 7.75043 7.82500 7.98257 8.37731 8.92475 9.55032 11.03696 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.004623 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.134143 B = 6054.786081 C = 6493.490376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.050 3.950 10 H 0.037 0.963 11 C -0.116 4.116 12 C 0.038 3.962 13 N -0.521 5.521 14 C 0.084 3.916 15 C -0.015 4.015 16 C -0.157 4.157 17 C 0.096 3.904 18 N -0.477 5.477 19 C 0.105 3.895 20 C -0.068 4.068 21 Cl -0.043 7.043 22 C 0.049 3.951 23 H 0.260 0.740 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.037 0.963 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -14.964 5.089 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.031 3.969 10 H 0.055 0.945 11 C -0.155 4.155 12 C -0.089 4.089 13 N -0.245 5.245 14 C -0.045 4.045 15 C -0.025 4.025 16 C -0.177 4.177 17 C -0.061 4.061 18 N -0.187 5.187 19 C -0.053 4.053 20 C -0.097 4.097 21 Cl -0.014 7.014 22 C -0.077 4.077 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.055 0.945 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.441 -15.916 4.716 16.663 hybrid contribution 1.172 2.289 0.451 2.610 sum 2.612 -13.628 5.167 14.806 Atomic orbital electron populations 1.69964 1.05903 1.26537 1.50179 1.24960 0.94828 0.99032 0.94924 0.86617 0.79832 0.83521 0.78158 1.20620 1.21267 1.19963 1.21032 0.92781 0.90297 1.51339 0.92588 1.19723 0.92119 0.91023 0.94073 0.94507 1.22682 1.02276 0.90596 0.99934 1.22967 0.93901 0.96954 0.95089 1.63598 1.08951 1.21649 1.30338 1.21211 0.96193 0.90231 0.96833 1.20343 0.94948 0.95207 0.91957 1.22130 0.98768 0.99165 0.97653 1.22778 0.95928 0.89390 0.97980 1.67774 1.17843 1.32002 1.01040 1.22740 0.92883 0.94958 0.94673 1.21953 1.01310 0.96828 0.89630 1.98387 1.78528 1.97096 1.27349 1.23179 0.95993 0.90928 0.97629 0.93006 0.90801 0.93386 0.92040 0.94634 0.93321 0.89616 0.84227 0.82327 0.82151 0.94481 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 12.12 55.43 0.67 -24.43 16 2 C 0.06 1.76 5.34 -17.82 -0.10 1.67 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.86 8.55 -34.44 -0.29 -14.15 16 8 H 0.06 1.48 7.79 -52.49 -0.41 1.07 16 9 C 0.05 1.22 2.96 -89.63 -0.27 0.95 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.12 -2.64 5.64 -24.90 -0.14 -2.78 16 12 C 0.04 0.72 6.52 -2.83 -0.02 0.70 16 13 N -0.52 -9.43 5.08 -232.68 -1.18 -10.62 16 14 C 0.08 1.25 4.13 -4.98 -0.02 1.23 16 15 C -0.02 -0.21 5.09 -104.29 -0.53 -0.74 16 16 C -0.16 -1.83 9.47 -39.45 -0.37 -2.20 16 17 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16 18 N -0.48 -6.05 10.36 -13.22 -0.14 -6.19 16 19 C 0.11 1.29 10.99 -17.51 -0.19 1.10 16 20 C -0.07 -0.91 6.34 -39.36 -0.25 -1.16 16 21 Cl -0.04 -0.57 27.81 -51.86 -1.44 -2.02 16 22 C 0.05 1.01 6.08 -2.30 -0.01 0.99 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.07 1.83 7.54 -51.93 -0.39 1.44 16 25 H 0.05 1.13 8.03 -51.93 -0.42 0.71 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.04 0.60 7.06 -51.93 -0.37 0.23 16 28 H 0.05 0.71 7.65 -51.92 -0.40 0.31 16 29 H 0.09 1.25 7.54 -51.93 -0.39 0.85 16 30 H 0.14 1.38 8.05 -52.49 -0.42 0.96 16 31 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -28.51 298.71 -9.44 -37.95 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.44 Total: -1.61 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.39 Total: -13.52 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.65 Total: -41.24 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.44 Total: -2.02 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.51 -9.44 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397792245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.012 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds