Wall clock time and date at job start Mon Mar 30 2020 08:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48502 * 109.47077 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47393 * 30.00179 * 3 2 1 6 6 H 1.48501 * 109.47073 * 149.99949 * 3 2 1 7 7 C 1.37880 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00168 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.87361 * 62.39065 * 9 7 2 11 11 C 1.55143 * 110.99071 * 298.55219 * 9 7 2 12 12 C 1.54323 * 103.01703 * 206.25429 * 11 9 7 13 13 N 1.47449 * 107.23272 * 22.28018 * 12 11 9 14 14 C 1.46899 * 110.99787 * 123.26054 * 13 12 11 15 15 C 1.50699 * 109.47269 * 75.61500 * 14 13 12 16 16 C 1.38652 * 120.79216 * 254.92892 * 15 14 13 17 17 C 1.38192 * 119.17497 * 179.72774 * 16 15 14 18 18 N 1.31882 * 120.79619 * 359.97438 * 17 16 15 19 19 C 1.31848 * 121.73499 * 0.02562 * 18 17 16 20 20 C 1.38346 * 120.74515 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.43060 * 180.02562 * 20 19 18 22 22 C 1.47839 * 108.56865 * 0.99356 * 13 12 11 23 23 H 0.96998 * 119.99946 * 0.02562 * 1 2 3 24 24 H 1.08996 * 110.70752 * 87.87358 * 11 9 7 25 25 H 1.09000 * 110.70374 * 324.63410 * 11 9 7 26 26 H 1.08996 * 109.88998 * 262.87925 * 12 11 9 27 27 H 1.08997 * 110.02411 * 141.76146 * 12 11 9 28 28 H 1.09011 * 109.46963 * 315.61401 * 14 13 12 29 29 H 1.09003 * 109.47129 * 195.61667 * 14 13 12 30 30 H 1.07995 * 120.41866 * 359.74498 * 16 15 14 31 31 H 1.08009 * 119.60247 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.62358 * 179.97438 * 19 18 17 33 33 H 1.09001 * 110.37765 * 94.72860 * 22 13 12 34 34 H 1.09002 * 110.37479 * 217.07573 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6477 -2.5993 -0.9028 11 6 0.3741 -2.6346 1.2721 12 6 0.2540 -4.1628 1.4505 13 7 1.3922 -4.7761 0.7416 14 6 2.1864 -5.6157 1.6484 15 6 1.4559 -6.9085 1.9051 16 6 0.8152 -7.1339 3.1139 17 6 0.1505 -8.3292 3.3115 18 7 0.1206 -9.2493 2.3671 19 6 0.7180 -9.0704 1.2054 20 6 1.4030 -7.8991 0.9353 21 17 2.1861 -7.6719 -0.5973 22 6 2.2186 -3.6986 0.1571 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6069 -2.1868 1.1136 25 1 0.8703 -2.1841 2.1317 26 1 -0.6837 -4.5138 1.0197 27 1 0.2946 -4.4193 2.5090 28 1 2.3372 -5.0901 2.5915 29 1 3.1533 -5.8290 1.1927 30 1 0.8351 -6.3845 3.8914 31 1 -0.3506 -8.5122 4.2506 32 1 0.6721 -9.8470 0.4563 33 1 3.0366 -3.4404 0.8296 34 1 2.6070 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397792245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:53 Heat of formation + Delta-G solvation = 11.037726 kcal Electronic energy + Delta-G solvation = -17727.240598 eV Core-core repulsion = 14877.777188 eV Total energy + Delta-G solvation = -2849.463410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31257 -39.60422 -37.47619 -35.59221 -34.12776 -32.01218 -31.48590 -30.00824 -27.52730 -25.89562 -24.48789 -23.18575 -21.51826 -21.39426 -18.53516 -17.84677 -17.60350 -16.91127 -16.71313 -16.40596 -16.20346 -15.06123 -14.92025 -14.63801 -14.32316 -14.04059 -13.96670 -13.15850 -13.06656 -13.00482 -12.89460 -12.73748 -12.46050 -12.27920 -12.06493 -12.03287 -11.48142 -11.18655 -10.89906 -10.58683 -10.54162 -10.49511 -9.87141 -9.18871 -8.13956 -6.24725 -0.01191 0.10693 1.18296 1.41369 1.42407 1.52083 2.41973 2.65453 3.16659 3.23144 3.50856 3.55004 3.77282 3.97663 4.08806 4.18847 4.36787 4.47532 4.50586 4.61686 4.67369 4.70389 4.83181 4.86977 5.05320 5.15605 5.24333 5.33588 5.55858 5.59915 5.82377 5.90878 6.02482 6.24754 6.36074 6.84914 6.85301 7.43560 8.95034 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.004623 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.134143 B = 6054.786081 C = 6493.490376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.039 3.961 10 H 0.000 1.000 11 C -0.107 4.107 12 C 0.052 3.948 13 N -0.523 5.523 14 C 0.086 3.914 15 C -0.031 4.031 16 C -0.154 4.154 17 C 0.099 3.901 18 N -0.491 5.491 19 C 0.103 3.897 20 C -0.080 4.080 21 Cl -0.052 7.052 22 C 0.065 3.935 23 H 0.261 0.739 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.192 0.808 32 H 0.178 0.822 33 H 0.040 0.960 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -15.807 6.505 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.018 0.982 11 C -0.146 4.146 12 C -0.075 4.075 13 N -0.247 5.247 14 C -0.042 4.042 15 C -0.040 4.040 16 C -0.174 4.174 17 C -0.057 4.057 18 N -0.201 5.201 19 C -0.054 4.054 20 C -0.109 4.109 21 Cl -0.023 7.023 22 C -0.062 4.062 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.179 0.821 31 H 0.209 0.791 32 H 0.195 0.805 33 H 0.058 0.942 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.999 -16.778 6.131 17.975 hybrid contribution 0.974 2.496 0.028 2.680 sum 2.974 -14.282 6.159 15.835 Atomic orbital electron populations 1.70095 1.07296 1.27263 1.51043 1.25739 0.95612 1.02397 0.94623 0.85608 0.78785 0.79366 0.78213 1.20262 1.21002 1.19068 1.21391 0.93016 0.91624 1.51097 0.92584 1.19670 0.92902 0.92165 0.93279 0.98193 1.22453 1.00096 0.93488 0.98532 1.22794 0.94181 0.93723 0.96822 1.63528 1.08899 1.20683 1.31573 1.21217 0.96090 0.90378 0.96508 1.20311 0.96004 0.94626 0.93099 1.22379 0.97864 0.99908 0.97294 1.23328 0.95081 0.88642 0.98676 1.67852 1.18126 1.32704 1.01413 1.23012 0.92327 0.95013 0.95088 1.22071 1.01981 0.97456 0.89397 1.98382 1.78765 1.97153 1.27979 1.22894 0.95210 0.90013 0.98103 0.93056 0.93605 0.94423 0.92347 0.91847 0.92245 0.89324 0.82145 0.79110 0.80520 0.94151 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.00 12.12 21.45 0.26 -52.74 16 2 C 0.02 0.85 5.34 84.65 0.45 1.30 16 3 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.53 -28.98 8.55 25.60 0.22 -28.76 16 8 H 0.06 2.97 7.79 -2.91 -0.02 2.95 16 9 C 0.04 1.95 2.96 -10.15 -0.03 1.92 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.11 -4.92 5.64 31.78 0.18 -4.74 16 12 C 0.05 1.91 6.52 86.65 0.57 2.48 16 13 N -0.52 -18.32 5.08 -890.07 -4.52 -22.84 16 14 C 0.09 2.39 4.13 85.56 0.35 2.74 16 15 C -0.03 -0.78 5.09 -19.65 -0.10 -0.88 16 16 C -0.15 -3.10 9.47 22.36 0.21 -2.89 16 17 C 0.10 1.87 11.18 84.67 0.95 2.81 16 18 N -0.49 -11.20 10.36 -195.74 -2.03 -13.23 16 19 C 0.10 2.33 10.99 84.72 0.93 3.26 16 20 C -0.08 -2.00 6.34 22.41 0.14 -1.85 16 21 Cl -0.05 -1.35 27.81 -2.72 -0.08 -1.42 16 22 C 0.06 2.64 6.08 86.78 0.53 3.16 16 23 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.05 2.33 7.54 -2.39 -0.02 2.31 16 25 H 0.04 1.77 8.03 -2.39 -0.02 1.75 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.96 7.06 -2.39 -0.02 1.94 16 28 H 0.06 1.55 7.65 -2.38 -0.02 1.53 16 29 H 0.09 2.42 7.54 -2.39 -0.02 2.40 16 30 H 0.16 2.51 8.05 -2.91 -0.02 2.49 16 31 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.04 1.60 7.70 -2.39 -0.02 1.58 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -61.45 298.71 1.15 -60.30 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.09 Total: 6.28 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.40 Total: -21.43 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -6.29 Total: -88.81 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.42 kcal Total: -61.45 1.15 -60.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397792245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.337 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds