Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38262 * 119.99072 * 2 1 4 4 C 1.38222 * 120.02328 * 179.76854 * 3 2 1 5 5 C 1.38233 * 120.01413 * 0.50194 * 4 3 2 6 6 C 1.50702 * 120.00709 * 179.77480 * 5 4 3 7 7 H 1.08996 * 110.35196 * 216.86867 * 6 5 4 8 8 C 1.54944 * 110.31104 * 94.72301 * 6 5 4 9 9 C 1.55304 * 100.97800 * 204.65934 * 8 6 5 10 10 C 1.54384 * 102.25492 * 34.11596 * 9 8 6 11 11 H 1.08998 * 109.82952 * 98.24246 * 10 9 8 12 12 C 1.50696 * 109.83063 * 219.12939 * 10 9 8 13 13 H 1.08001 * 119.99842 * 359.97438 * 12 10 9 14 14 C 1.37880 * 120.00295 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99486 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00035 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47444 * 59.99907 * 16 14 12 18 18 H 1.48501 * 109.47219 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47571 * 299.99473 * 16 14 12 20 20 O 1.43240 * 107.58460 * 338.63785 * 10 9 8 21 21 C 1.38330 * 119.98606 * 359.49460 * 5 4 3 22 22 Cl 1.73602 * 120.01373 * 180.23127 * 21 5 4 23 23 C 1.38192 * 119.99258 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47421 * 269.97604 * 1 2 3 25 25 H 1.08997 * 109.47061 * 29.98569 * 1 2 3 26 26 H 1.09002 * 109.46612 * 149.97898 * 1 2 3 27 27 H 1.08001 * 119.98607 * 0.03701 * 3 2 1 28 28 H 1.08004 * 119.99018 * 180.27386 * 4 3 2 29 29 H 1.09002 * 111.12633 * 86.72064 * 8 6 5 30 30 H 1.08995 * 111.12590 * 322.60066 * 8 6 5 31 31 H 1.09006 * 110.84773 * 152.30089 * 9 8 6 32 32 H 1.08991 * 110.85201 * 275.92112 * 9 8 6 33 33 H 0.96997 * 119.99641 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.00794 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 0.0048 5 6 4.2725 0.0017 -0.0008 6 6 5.7796 0.0028 -0.0007 7 1 6.1593 -0.8115 -0.6177 8 6 6.3173 -0.1234 1.4470 9 6 7.7190 0.5291 1.2997 10 6 7.4602 1.6273 0.2459 11 1 7.3116 2.5870 0.7409 12 6 8.6308 1.7153 -0.6989 13 1 9.4792 1.0595 -0.5700 14 6 8.6189 2.6330 -1.7279 15 7 7.5855 3.4311 -1.8850 16 14 10.0703 2.7425 -2.8986 17 1 10.2533 1.4377 -3.5837 18 1 9.8126 3.7997 -3.9091 19 1 11.2988 3.0768 -2.1342 20 8 6.2785 1.2633 -0.4772 21 6 3.5816 -1.1966 -0.0007 22 17 4.4502 -2.6998 -0.0018 23 6 2.1978 -1.1969 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3632 -0.8898 -0.5142 27 1 1.6578 2.1326 0.0006 28 1 4.1197 2.1340 0.0093 29 1 6.3999 -1.1684 1.7457 30 1 5.6958 0.4349 2.1470 31 1 8.0445 0.9663 2.2436 32 1 8.4474 -0.1948 0.9346 33 1 7.5773 4.0770 -2.6087 34 1 1.6578 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404564606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -56.995115 kcal Electronic energy + Delta-G solvation = -17899.053419 eV Core-core repulsion = 15014.347132 eV Total energy + Delta-G solvation = -2884.706287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.90115 -39.39305 -37.45779 -34.94663 -33.84116 -32.68323 -31.65366 -30.49052 -27.96966 -25.78900 -23.76695 -23.12538 -22.02798 -21.44103 -18.62946 -17.84034 -17.39653 -16.66001 -16.38769 -15.92184 -15.62784 -14.98631 -14.79824 -14.69280 -14.26097 -13.88594 -13.67045 -13.60377 -13.12530 -12.97020 -12.78034 -12.46015 -12.39598 -12.32988 -12.20064 -12.12847 -11.87160 -11.66253 -11.49320 -11.10033 -10.67421 -9.95097 -9.75341 -9.36845 -8.12746 -6.34117 0.18138 0.32441 1.15447 1.39311 1.42105 1.49481 2.40797 2.62087 3.04935 3.47176 3.74010 3.85378 3.96369 4.01934 4.19470 4.28506 4.34978 4.58298 4.59881 4.66974 4.75160 4.87289 4.90499 4.91864 4.99353 5.07071 5.17165 5.26029 5.30569 5.51291 5.58244 5.65292 5.75451 5.92550 6.18875 6.58597 7.01789 7.42527 8.94094 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.005706 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.247606 B = 4905.597586 C = 5434.441509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.078 4.078 3 C -0.119 4.119 4 C -0.098 4.098 5 C -0.092 4.092 6 C 0.107 3.893 7 H 0.056 0.944 8 C -0.128 4.128 9 C -0.136 4.136 10 C 0.199 3.801 11 H 0.006 0.994 12 C -0.566 4.566 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.901 5.901 16 Si 0.957 3.043 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.263 1.263 20 O -0.381 6.381 21 C -0.036 4.036 22 Cl -0.070 7.070 23 C -0.114 4.114 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.261 0.739 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 -9.151 5.669 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.116 4.116 5 C -0.093 4.093 6 C 0.049 3.951 7 H 0.074 0.926 8 C -0.165 4.165 9 C -0.174 4.174 10 C 0.143 3.857 11 H 0.024 0.976 12 C -0.603 4.603 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.539 5.539 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.188 1.188 20 O -0.301 6.301 21 C -0.063 4.063 22 Cl -0.041 7.041 23 C -0.132 4.132 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.131 0.869 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.358 -9.018 5.415 17.003 hybrid contribution 1.331 0.222 -0.678 1.510 sum -12.027 -8.796 4.737 15.635 Atomic orbital electron populations 1.20841 0.87664 1.04160 1.03711 1.20235 0.98157 0.91469 0.97980 1.21401 0.92918 0.99422 0.99912 1.21039 0.94956 0.97304 0.98344 1.19847 0.95368 0.92736 1.01342 1.21661 0.89486 0.89014 0.94940 0.92601 1.23107 0.96037 1.01976 0.95425 1.23101 0.96803 0.98197 0.99306 1.20193 0.83453 0.92445 0.89562 0.97578 1.21791 1.03265 1.20003 1.15246 0.92106 1.25911 0.98279 0.94525 0.98998 1.70161 1.30938 1.21198 1.31577 0.85652 0.79757 0.77833 0.78596 1.19761 1.20797 1.18812 1.88694 1.44261 1.35275 1.61873 1.20786 0.93059 0.85875 1.06566 1.98336 1.77302 1.31557 1.96934 1.21137 0.90610 0.99980 1.01501 0.89503 0.90342 0.89995 0.83525 0.86947 0.88953 0.90854 0.90185 0.91455 0.93040 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 2 C -0.08 -1.81 5.88 -19.87 -0.12 -1.92 16 3 C -0.12 -3.29 9.70 22.27 0.22 -3.08 16 4 C -0.10 -3.58 9.38 22.26 0.21 -3.37 16 5 C -0.09 -3.44 5.11 -19.84 -0.10 -3.54 16 6 C 0.11 4.59 3.12 30.51 0.10 4.69 16 7 H 0.06 2.49 7.27 -2.39 -0.02 2.47 16 8 C -0.13 -4.71 6.56 32.05 0.21 -4.50 16 9 C -0.14 -5.70 6.53 31.86 0.21 -5.49 16 10 C 0.20 10.65 3.35 30.32 0.10 10.75 16 11 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 12 C -0.57 -32.68 8.75 25.60 0.22 -32.46 16 13 H 0.06 3.38 7.52 -2.91 -0.02 3.36 16 14 C 0.02 1.45 5.41 84.66 0.46 1.91 16 15 N -0.90 -55.53 12.93 21.45 0.28 -55.25 16 16 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 O -0.38 -20.55 9.01 -148.98 -1.34 -21.90 16 21 C -0.04 -1.13 6.31 22.32 0.14 -0.99 16 22 Cl -0.07 -2.02 27.48 -2.72 -0.07 -2.09 16 23 C -0.11 -2.83 9.49 22.29 0.21 -2.62 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 27 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.11 4.76 7.30 -2.91 -0.02 4.74 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.07 2.58 8.05 -2.39 -0.02 2.56 16 31 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.07 2.78 7.65 -2.39 -0.02 2.76 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -67.74 300.82 4.54 -63.20 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.09 Total: 10.49 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 2.57 Total: -41.45 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.34 Total: -21.90 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -67.74 4.54 -63.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.204 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds