Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38272 * 119.99271 * 2 1 4 4 C 1.38219 * 120.02538 * 180.27934 * 3 2 1 5 5 C 1.38240 * 120.01161 * 359.44036 * 4 3 2 6 6 C 1.50700 * 120.00498 * 180.26174 * 5 4 3 7 7 H 1.08993 * 109.87317 * 144.26823 * 6 5 4 8 8 C 1.54103 * 109.87678 * 265.27386 * 6 5 4 9 9 C 1.54816 * 104.18849 * 121.45143 * 8 6 5 10 10 C 1.55004 * 102.08947 * 20.88193 * 9 8 6 11 11 H 1.09000 * 110.61721 * 81.47407 * 10 9 8 12 12 C 1.50703 * 110.61648 * 204.31439 * 10 9 8 13 13 H 1.07998 * 119.99810 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00044 * 179.97438 * 12 10 9 15 15 N 1.31507 * 120.00328 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99672 * 0.02562 * 14 12 10 17 17 H 1.48504 * 109.46996 * 90.00065 * 16 14 12 18 18 H 1.48502 * 109.47006 * 209.99855 * 16 14 12 19 19 H 1.48493 * 109.47491 * 330.00037 * 16 14 12 20 20 O 1.43746 * 109.88107 * 23.10488 * 6 5 4 21 21 C 1.38321 * 119.98729 * 0.53568 * 5 4 3 22 22 Cl 1.73599 * 120.01374 * 179.76678 * 21 5 4 23 23 C 1.38194 * 119.99475 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47157 * 90.00093 * 1 2 3 25 25 H 1.08998 * 109.47322 * 210.00103 * 1 2 3 26 26 H 1.08999 * 109.47372 * 330.00219 * 1 2 3 27 27 H 1.08002 * 119.98328 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99099 * 179.70395 * 4 3 2 29 29 H 1.08994 * 110.48881 * 240.12975 * 8 6 5 30 30 H 1.09001 * 110.48665 * 2.64883 * 8 6 5 31 31 H 1.08999 * 110.90590 * 139.07648 * 9 8 6 32 32 H 1.08992 * 110.90956 * 262.64857 * 9 8 6 33 33 H 0.96998 * 119.99970 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.00574 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1984 -0.0058 5 6 4.2725 0.0017 0.0000 6 6 5.7795 0.0028 -0.0004 7 1 6.1507 -0.8260 0.6023 8 6 6.3031 -0.1235 -1.4442 9 6 7.1677 1.1447 -1.6466 10 6 7.4862 1.5569 -0.1867 11 1 8.3173 0.9704 0.2050 12 6 7.7939 3.0300 -0.1063 13 1 7.7710 3.6359 -1.0000 14 6 8.1046 3.6041 1.1081 15 7 8.3726 4.8896 1.1784 16 14 8.1448 2.5557 2.6537 17 1 9.5116 2.0072 2.8443 18 1 7.7779 3.3891 3.8268 19 1 7.1771 1.4375 2.5188 20 8 6.2675 1.2492 0.5237 21 6 3.5816 -1.1966 0.0005 22 17 4.4501 -2.6997 0.0017 23 6 2.1978 -1.1969 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6577 2.1327 -0.0004 28 1 4.1196 2.1341 -0.0107 29 1 6.9116 -1.0213 -1.5521 30 1 5.4734 -0.1388 -2.1510 31 1 8.0813 0.9095 -2.1925 32 1 6.6016 1.9240 -2.1567 33 1 8.5915 5.2934 2.0328 34 1 1.6578 -2.1321 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404564607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = -37.297733 kcal Electronic energy + Delta-G solvation = -18014.589156 eV Core-core repulsion = 15130.737012 eV Total energy + Delta-G solvation = -2883.852144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.73450 -38.03942 -36.38639 -33.32291 -32.34259 -31.19241 -30.55102 -29.32566 -26.74191 -24.15801 -22.62408 -21.72920 -20.34839 -20.03240 -17.09988 -16.31525 -15.96290 -15.37647 -15.30519 -14.40700 -13.97634 -13.84613 -13.59530 -13.36812 -12.85707 -12.81110 -12.54775 -12.37548 -12.08101 -11.65413 -11.26958 -11.21608 -10.95778 -10.85047 -10.77241 -10.59086 -10.21206 -9.84922 -9.68122 -9.46909 -8.68659 -8.60660 -8.49837 -8.23549 -6.13914 -4.22608 1.27921 1.42987 2.24604 3.36379 3.43522 3.66337 3.73573 4.49862 4.61586 4.81005 4.97809 5.07139 5.22232 5.29832 5.38485 5.48900 5.49255 5.52048 5.66183 5.77821 5.91483 5.97090 6.03555 6.17103 6.24498 6.40149 6.43078 6.54156 6.62183 6.66624 6.78791 7.01538 7.12089 7.58467 8.15215 8.41770 8.87999 9.49729 10.96452 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.006470 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.675060 B = 4326.436085 C = 4809.975735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.075 4.075 5 C -0.068 4.068 6 C 0.104 3.896 7 H 0.067 0.933 8 C -0.142 4.142 9 C -0.134 4.134 10 C 0.170 3.830 11 H 0.028 0.972 12 C -0.518 4.518 13 H 0.080 0.920 14 C 0.085 3.915 15 N -0.890 5.890 16 Si 0.869 3.131 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.231 1.231 20 O -0.367 6.367 21 C -0.030 4.030 22 Cl -0.077 7.077 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.148 0.852 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.266 0.734 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 -12.544 -3.085 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.093 4.093 5 C -0.069 4.069 6 C 0.046 3.954 7 H 0.084 0.916 8 C -0.180 4.180 9 C -0.172 4.172 10 C 0.115 3.885 11 H 0.045 0.955 12 C -0.554 4.554 13 H 0.098 0.902 14 C -0.120 4.120 15 N -0.527 5.527 16 Si 0.695 3.305 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.154 1.154 20 O -0.287 6.287 21 C -0.057 4.057 22 Cl -0.048 7.048 23 C -0.137 4.137 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.166 0.834 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.723 -12.415 -2.811 17.997 hybrid contribution 0.257 -0.676 0.728 1.026 sum -12.466 -13.090 -2.084 18.196 Atomic orbital electron populations 1.20750 0.90879 1.02756 1.02273 1.19798 0.96044 0.92551 1.00369 1.21195 0.94325 0.97581 1.00603 1.21241 0.93451 0.98724 0.95858 1.19938 0.96445 0.91466 0.99089 1.21420 0.88437 0.91022 0.94558 0.91560 1.22901 0.99735 0.99402 0.95978 1.23015 0.98674 0.95570 0.99913 1.21144 0.83595 0.97012 0.86725 0.95472 1.20903 1.47244 0.91176 0.96116 0.90208 1.25045 0.92750 0.94822 0.99351 1.69912 1.45597 1.10999 1.26209 0.86973 0.79148 0.82401 0.81985 1.20923 1.21619 1.15353 1.89273 1.42592 1.35531 1.61302 1.20695 0.92150 0.86349 1.06494 1.98339 1.77139 1.32350 1.96964 1.20748 0.91557 0.98386 1.02997 0.91190 0.91661 0.91372 0.85573 0.83448 0.91476 0.91619 0.91619 0.91080 0.92451 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.09 -1.08 5.88 -104.63 -0.62 -1.70 16 3 C -0.12 -1.65 9.70 -39.58 -0.38 -2.04 16 4 C -0.07 -1.27 9.36 -39.59 -0.37 -1.64 16 5 C -0.07 -1.19 4.86 -104.59 -0.51 -1.69 16 6 C 0.10 1.99 3.13 -27.31 -0.09 1.91 16 7 H 0.07 1.26 7.19 -51.93 -0.37 0.88 16 8 C -0.14 -2.45 6.63 -25.20 -0.17 -2.62 16 9 C -0.13 -2.64 6.55 -24.72 -0.16 -2.80 16 10 C 0.17 4.05 2.51 -26.82 -0.07 3.98 16 11 H 0.03 0.66 7.46 -51.93 -0.39 0.27 16 12 C -0.52 -14.52 9.40 -34.44 -0.32 -14.84 16 13 H 0.08 2.39 8.01 -52.49 -0.42 1.96 16 14 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 15 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 16 Si 0.87 21.97 27.06 -169.99 -4.60 17.37 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.23 -5.75 5.62 56.52 0.32 -5.43 16 20 O -0.37 -8.56 7.22 -35.23 -0.25 -8.82 16 21 C -0.03 -0.46 6.31 -39.50 -0.25 -0.71 16 22 Cl -0.08 -1.07 27.43 -51.86 -1.42 -2.49 16 23 C -0.12 -1.54 9.49 -39.55 -0.38 -1.92 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.15 2.78 7.32 -52.49 -0.38 2.39 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 295.56 15.07 4.45 4.45 Total: -1.00 -30.27 295.56 -8.65 -38.92 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.56 Total: -0.83 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -3.04 Total: -22.32 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.77 Total: -26.29 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.25 Total: -8.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.60 Total: 17.37 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.42 Total: -2.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.27 -8.65 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.623 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds