Wall clock time and date at job start Mon Mar 30 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38272 * 119.99271 * 2 1 4 4 C 1.38219 * 120.02538 * 180.27934 * 3 2 1 5 5 C 1.38240 * 120.01161 * 359.44036 * 4 3 2 6 6 C 1.50700 * 120.00498 * 180.26174 * 5 4 3 7 7 H 1.08993 * 109.87317 * 144.26823 * 6 5 4 8 8 C 1.54103 * 109.87678 * 265.27386 * 6 5 4 9 9 C 1.54816 * 104.18849 * 121.45143 * 8 6 5 10 10 C 1.55004 * 102.08947 * 20.88193 * 9 8 6 11 11 H 1.09000 * 110.61721 * 81.47407 * 10 9 8 12 12 C 1.50703 * 110.61648 * 204.31439 * 10 9 8 13 13 H 1.07998 * 119.99810 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00044 * 179.97438 * 12 10 9 15 15 N 1.31507 * 120.00328 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99672 * 0.02562 * 14 12 10 17 17 H 1.48504 * 109.46996 * 90.00065 * 16 14 12 18 18 H 1.48502 * 109.47006 * 209.99855 * 16 14 12 19 19 H 1.48493 * 109.47491 * 330.00037 * 16 14 12 20 20 O 1.43746 * 109.88107 * 23.10488 * 6 5 4 21 21 C 1.38321 * 119.98729 * 0.53568 * 5 4 3 22 22 Cl 1.73599 * 120.01374 * 179.76678 * 21 5 4 23 23 C 1.38194 * 119.99475 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47157 * 90.00093 * 1 2 3 25 25 H 1.08998 * 109.47322 * 210.00103 * 1 2 3 26 26 H 1.08999 * 109.47372 * 330.00219 * 1 2 3 27 27 H 1.08002 * 119.98328 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99099 * 179.70395 * 4 3 2 29 29 H 1.08994 * 110.48881 * 240.12975 * 8 6 5 30 30 H 1.09001 * 110.48665 * 2.64883 * 8 6 5 31 31 H 1.08999 * 110.90590 * 139.07648 * 9 8 6 32 32 H 1.08992 * 110.90956 * 262.64857 * 9 8 6 33 33 H 0.96998 * 119.99970 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.00574 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1984 -0.0058 5 6 4.2725 0.0017 0.0000 6 6 5.7795 0.0028 -0.0004 7 1 6.1507 -0.8260 0.6023 8 6 6.3031 -0.1235 -1.4442 9 6 7.1677 1.1447 -1.6466 10 6 7.4862 1.5569 -0.1867 11 1 8.3173 0.9704 0.2050 12 6 7.7939 3.0300 -0.1063 13 1 7.7710 3.6359 -1.0000 14 6 8.1046 3.6041 1.1081 15 7 8.3726 4.8896 1.1784 16 14 8.1448 2.5557 2.6537 17 1 9.5116 2.0072 2.8443 18 1 7.7779 3.3891 3.8268 19 1 7.1771 1.4375 2.5188 20 8 6.2675 1.2492 0.5237 21 6 3.5816 -1.1966 0.0005 22 17 4.4501 -2.6997 0.0017 23 6 2.1978 -1.1969 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6577 2.1327 -0.0004 28 1 4.1196 2.1341 -0.0107 29 1 6.9116 -1.0213 -1.5521 30 1 5.4734 -0.1388 -2.1510 31 1 8.0813 0.9095 -2.1925 32 1 6.6016 1.9240 -2.1567 33 1 8.5915 5.2934 2.0328 34 1 1.6578 -2.1321 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404564607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:02 Heat of formation + Delta-G solvation = -53.899710 kcal Electronic energy + Delta-G solvation = -18015.309072 eV Core-core repulsion = 15130.737012 eV Total energy + Delta-G solvation = -2884.572060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02902 -39.51212 -37.47858 -35.00197 -34.00726 -32.79206 -31.68322 -30.85216 -28.15694 -25.71864 -23.80004 -23.11457 -21.98631 -21.43629 -19.13232 -17.70262 -17.41091 -16.86803 -16.57748 -16.10461 -15.36414 -14.99030 -14.80397 -14.74153 -14.67915 -14.35951 -13.77370 -13.64948 -13.14771 -12.93827 -12.84667 -12.57466 -12.41358 -12.23292 -12.15935 -11.96488 -11.85768 -11.71364 -11.37687 -11.33616 -10.80319 -10.25520 -9.78538 -9.42619 -8.37512 -6.49846 0.15730 0.30492 1.12902 1.33476 1.37089 1.63486 2.38421 2.59307 2.87368 3.41398 3.68143 3.84132 3.94123 4.01232 4.08471 4.24939 4.33055 4.43361 4.47885 4.62067 4.70498 4.85147 4.88416 4.90471 4.95427 5.01634 5.13827 5.23375 5.27885 5.37987 5.50920 5.53869 5.57175 5.90143 6.19459 6.38443 6.66311 7.26091 8.76650 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.006470 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.675060 B = 4326.436085 C = 4809.975735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.077 4.077 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.093 4.093 6 C 0.099 3.901 7 H 0.069 0.931 8 C -0.128 4.128 9 C -0.130 4.130 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.524 4.524 13 H 0.044 0.956 14 C 0.032 3.968 15 N -0.936 5.936 16 Si 0.932 3.068 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.227 1.227 20 O -0.390 6.390 21 C -0.035 4.035 22 Cl -0.067 7.067 23 C -0.114 4.114 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.268 0.732 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 -15.347 -2.952 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.117 4.117 5 C -0.094 4.094 6 C 0.041 3.959 7 H 0.087 0.913 8 C -0.166 4.166 9 C -0.167 4.167 10 C 0.112 3.888 11 H 0.048 0.952 12 C -0.562 4.562 13 H 0.063 0.937 14 C -0.168 4.168 15 N -0.575 5.575 16 Si 0.756 3.244 17 H -0.196 1.196 18 H -0.216 1.216 19 H -0.149 1.149 20 O -0.310 6.310 21 C -0.062 4.062 22 Cl -0.038 7.038 23 C -0.132 4.132 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.162 0.838 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.806 -15.233 -2.693 21.413 hybrid contribution 0.804 0.186 0.614 1.029 sum -14.002 -15.046 -2.079 20.658 Atomic orbital electron populations 1.20847 0.87838 1.04159 1.03667 1.20228 0.98092 0.91536 0.97883 1.21408 0.93114 0.99363 0.99971 1.21073 0.94909 0.97501 0.98221 1.19805 0.95354 0.92575 1.01651 1.21593 0.90014 0.88967 0.95357 0.91298 1.22840 0.99848 0.98777 0.95138 1.22926 0.99892 0.96533 0.97382 1.20998 0.84103 0.94221 0.89481 0.95205 1.21163 1.46745 0.93401 0.94850 0.93734 1.25863 0.92619 0.95825 1.02539 1.70033 1.47647 1.12741 1.27093 0.85987 0.79634 0.80751 0.78051 1.19632 1.21648 1.14921 1.89170 1.42144 1.37928 1.61790 1.20769 0.93020 0.85946 1.06454 1.98339 1.77168 1.31414 1.96922 1.21134 0.90772 0.99869 1.01444 0.89621 0.89920 0.90420 0.83797 0.86733 0.89066 0.90408 0.89782 0.92474 0.92263 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.23 0.71 -0.74 16 2 C -0.08 -1.66 5.88 -19.87 -0.12 -1.78 16 3 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 4 C -0.10 -3.37 9.36 22.27 0.21 -3.16 16 5 C -0.09 -3.14 4.86 -19.84 -0.10 -3.24 16 6 C 0.10 3.69 3.13 30.22 0.09 3.79 16 7 H 0.07 2.51 7.19 -2.39 -0.02 2.49 16 8 C -0.13 -4.22 6.63 31.59 0.21 -4.01 16 9 C -0.13 -5.08 6.55 31.90 0.21 -4.88 16 10 C 0.17 8.04 2.51 30.53 0.08 8.12 16 11 H 0.03 1.43 7.46 -2.39 -0.02 1.41 16 12 C -0.52 -30.56 9.40 25.60 0.24 -30.32 16 13 H 0.04 2.82 8.01 -2.91 -0.02 2.80 16 14 C 0.03 1.88 5.47 84.66 0.46 2.34 16 15 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 16 Si 0.93 46.31 27.06 68.60 1.86 48.17 16 17 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 19 H -0.23 -11.01 5.62 99.48 0.56 -10.45 16 20 O -0.39 -18.35 7.22 -148.98 -1.08 -19.43 16 21 C -0.04 -0.99 6.31 22.32 0.14 -0.85 16 22 Cl -0.07 -1.70 27.43 -2.72 -0.07 -1.78 16 23 C -0.11 -2.58 9.49 22.29 0.21 -2.37 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 27 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.11 4.59 7.32 -2.91 -0.02 4.57 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.08 2.37 7.69 -2.39 -0.02 2.36 16 31 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -67.51 295.56 4.52 -62.99 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.94 Total: 8.76 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.57 Total: -40.03 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.30 Total: -58.68 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.08 Total: -19.43 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.86 Total: 48.17 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.07 Total: -1.78 kcal Total: -67.51 4.52 -62.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds