Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38264 * 119.99261 * 2 1 4 4 C 1.38224 * 120.02372 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.01528 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00725 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.54916 * 213.59749 * 6 5 4 8 8 C 1.54992 * 110.62176 * 90.54355 * 6 5 4 9 9 C 1.54814 * 102.09316 * 204.47579 * 8 6 5 10 10 C 1.54103 * 104.18536 * 20.87930 * 9 8 6 11 11 H 1.09001 * 110.00233 * 242.53581 * 10 9 8 12 12 C 1.50699 * 109.87587 * 121.45690 * 10 9 8 13 13 H 1.08001 * 120.00299 * 0.71120 * 12 10 9 14 14 C 1.37878 * 120.00016 * 180.71473 * 12 10 9 15 15 N 1.31519 * 119.99958 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00361 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47340 * 89.99466 * 16 14 12 18 18 H 1.48500 * 109.47352 * 209.99771 * 16 14 12 19 19 H 1.48508 * 109.47053 * 329.99882 * 16 14 12 20 20 O 1.43739 * 107.29511 * 2.02969 * 10 9 8 21 21 C 1.38335 * 119.98682 * 359.97438 * 5 4 3 22 22 Cl 1.73599 * 120.01202 * 180.02562 * 21 5 4 23 23 C 1.38199 * 119.99502 * 180.28012 * 2 1 3 24 24 H 1.08992 * 109.47142 * 90.00043 * 1 2 3 25 25 H 1.09000 * 109.46673 * 209.99925 * 1 2 3 26 26 H 1.09002 * 109.46667 * 329.99734 * 1 2 3 27 27 H 1.07991 * 119.99053 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.99298 * 179.97438 * 4 3 2 29 29 H 1.09000 * 110.90358 * 322.67175 * 8 6 5 30 30 H 1.08999 * 110.90776 * 86.27657 * 8 6 5 31 31 H 1.08991 * 110.48498 * 262.20289 * 9 8 6 32 32 H 1.09005 * 110.59909 * 139.61074 * 9 8 6 33 33 H 0.96994 * 119.99854 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.00335 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 0.0005 5 6 4.2726 0.0016 0.0005 6 6 5.7796 0.0027 0.0005 7 1 6.1628 -0.8472 -0.5643 8 6 6.3255 -0.0107 1.4511 9 6 7.7287 0.6191 1.2754 10 6 7.6325 1.3905 -0.0552 11 1 8.3344 0.9753 -0.7785 12 6 7.9365 2.8485 0.1746 13 1 8.1870 3.1983 1.1653 14 6 7.8948 3.7360 -0.8797 15 7 7.5902 3.3100 -2.0862 16 14 8.2708 5.5433 -0.5948 17 1 9.7256 5.7809 -0.7760 18 1 7.5098 6.3668 -1.5683 19 1 7.8763 5.9192 0.7867 20 8 6.2871 1.2420 -0.5390 21 6 3.5816 -1.1968 0.0005 22 17 4.4501 -2.6999 0.0012 23 6 2.1979 -1.1969 -0.0059 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6580 2.1326 -0.0004 28 1 4.1198 2.1339 0.0001 29 1 5.7042 0.6001 2.1061 30 1 6.4013 -1.0304 1.8288 31 1 8.4903 -0.1580 1.2117 32 1 7.9486 1.3012 2.0968 33 1 7.5612 3.9343 -2.8279 34 1 1.6579 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404564608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -40.698123 kcal Electronic energy + Delta-G solvation = -17920.128594 eV Core-core repulsion = 15036.128998 eV Total energy + Delta-G solvation = -2883.999596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.52738 -37.77321 -36.27855 -33.25393 -32.23302 -30.91496 -30.43480 -28.94006 -26.47351 -24.02652 -22.57499 -21.78927 -20.16927 -19.93092 -16.98854 -16.10564 -15.73559 -15.17108 -14.84324 -14.34474 -13.89571 -13.74344 -13.49408 -13.42378 -12.97142 -12.45891 -12.32455 -12.24006 -11.72496 -11.57345 -11.16015 -11.07398 -10.92960 -10.77730 -10.58723 -10.41720 -10.26801 -10.03802 -9.74485 -9.17097 -8.59949 -8.56131 -8.27106 -7.94038 -6.00377 -4.13641 1.38656 1.53628 2.35427 3.29914 3.36980 3.39900 3.84292 4.41864 4.76257 4.91745 5.07335 5.22070 5.33299 5.40917 5.51981 5.55889 5.66439 5.71919 5.78774 5.86280 6.01677 6.13394 6.20979 6.32878 6.37617 6.56133 6.66105 6.72602 6.76263 6.80492 6.96975 7.12674 7.55533 7.88329 8.24548 8.52469 8.99665 9.56970 11.06745 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.006077 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.785027 B = 4606.783201 C = 5470.456948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.089 4.089 3 C -0.120 4.120 4 C -0.072 4.072 5 C -0.059 4.059 6 C 0.100 3.900 7 H 0.066 0.934 8 C -0.137 4.137 9 C -0.145 4.145 10 C 0.204 3.796 11 H 0.027 0.973 12 C -0.533 4.533 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.862 5.862 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.343 6.343 21 C -0.029 4.029 22 Cl -0.077 7.077 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.147 0.853 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.261 0.739 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 -8.345 4.665 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.090 4.090 5 C -0.060 4.060 6 C 0.041 3.959 7 H 0.084 0.916 8 C -0.175 4.175 9 C -0.183 4.183 10 C 0.148 3.852 11 H 0.045 0.955 12 C -0.570 4.570 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.498 5.498 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.262 6.262 21 C -0.056 4.056 22 Cl -0.048 7.048 23 C -0.138 4.138 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.165 0.835 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.185 -8.282 4.334 14.576 hybrid contribution 0.401 0.669 0.150 0.794 sum -10.784 -7.613 4.485 13.941 Atomic orbital electron populations 1.20741 0.90972 1.02606 1.02260 1.19773 0.95957 0.92572 1.00604 1.21169 0.94340 0.97491 1.00839 1.21231 0.93362 0.98779 0.95651 1.19771 0.96214 0.91350 0.98669 1.21777 0.88241 0.92073 0.93828 0.91617 1.23011 0.97689 1.00094 0.96660 1.23057 0.94876 0.98914 1.01476 1.20301 0.81130 0.95351 0.88372 0.95536 1.21178 1.48553 0.92436 0.94832 0.91947 1.25085 0.93862 0.98788 0.95122 1.70045 1.45496 1.34746 0.99536 0.86654 0.78322 0.85156 0.78170 1.20539 1.21111 1.19772 1.89279 1.30914 1.34611 1.71396 1.20696 0.92107 0.86351 1.06443 1.98335 1.77167 1.32363 1.96975 1.20727 0.91561 0.98327 1.03166 0.91229 0.91715 0.91474 0.85729 0.83536 0.91445 0.91963 0.93021 0.91327 0.92938 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.17 5.88 -104.63 -0.62 -1.79 16 3 C -0.12 -1.78 9.70 -39.58 -0.38 -2.16 16 4 C -0.07 -1.31 9.38 -39.59 -0.37 -1.68 16 5 C -0.06 -1.10 5.12 -104.59 -0.54 -1.64 16 6 C 0.10 2.07 3.08 -26.83 -0.08 1.98 16 7 H 0.07 1.36 7.13 -51.93 -0.37 0.99 16 8 C -0.14 -2.59 6.58 -24.72 -0.16 -2.75 16 9 C -0.15 -3.05 6.63 -25.20 -0.17 -3.22 16 10 C 0.20 5.27 3.26 -27.31 -0.09 5.18 16 11 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 12 C -0.53 -14.82 8.78 -34.44 -0.30 -15.12 16 13 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 14 C 0.08 2.18 5.41 -17.82 -0.10 2.08 16 15 N -0.86 -25.55 12.92 55.43 0.72 -24.83 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 O -0.34 -8.82 9.26 -35.23 -0.33 -9.15 16 21 C -0.03 -0.48 6.31 -39.50 -0.25 -0.72 16 22 Cl -0.08 -1.15 27.40 -51.86 -1.42 -2.57 16 23 C -0.12 -1.65 9.49 -39.55 -0.38 -2.03 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.15 2.98 7.36 -52.48 -0.39 2.59 16 29 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.42 7.40 -51.93 -0.38 1.04 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -30.00 300.51 -9.05 -39.05 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.46 Total: -0.68 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -3.07 Total: -22.54 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.72 Total: -24.83 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.33 Total: -9.15 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.42 Total: -2.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.00 -9.05 -39.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.651 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds