Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38264 * 119.99261 * 2 1 4 4 C 1.38224 * 120.02372 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.01528 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00725 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.54916 * 213.59749 * 6 5 4 8 8 C 1.54992 * 110.62176 * 90.54355 * 6 5 4 9 9 C 1.54814 * 102.09316 * 204.47579 * 8 6 5 10 10 C 1.54103 * 104.18536 * 20.87930 * 9 8 6 11 11 H 1.09001 * 110.00233 * 242.53581 * 10 9 8 12 12 C 1.50699 * 109.87587 * 121.45690 * 10 9 8 13 13 H 1.08001 * 120.00299 * 0.71120 * 12 10 9 14 14 C 1.37878 * 120.00016 * 180.71473 * 12 10 9 15 15 N 1.31519 * 119.99958 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00361 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47340 * 89.99466 * 16 14 12 18 18 H 1.48500 * 109.47352 * 209.99771 * 16 14 12 19 19 H 1.48508 * 109.47053 * 329.99882 * 16 14 12 20 20 O 1.43739 * 107.29511 * 2.02969 * 10 9 8 21 21 C 1.38335 * 119.98682 * 359.97438 * 5 4 3 22 22 Cl 1.73599 * 120.01202 * 180.02562 * 21 5 4 23 23 C 1.38199 * 119.99502 * 180.28012 * 2 1 3 24 24 H 1.08992 * 109.47142 * 90.00043 * 1 2 3 25 25 H 1.09000 * 109.46673 * 209.99925 * 1 2 3 26 26 H 1.09002 * 109.46667 * 329.99734 * 1 2 3 27 27 H 1.07991 * 119.99053 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.99298 * 179.97438 * 4 3 2 29 29 H 1.09000 * 110.90358 * 322.67175 * 8 6 5 30 30 H 1.08999 * 110.90776 * 86.27657 * 8 6 5 31 31 H 1.08991 * 110.48498 * 262.20289 * 9 8 6 32 32 H 1.09005 * 110.59909 * 139.61074 * 9 8 6 33 33 H 0.96994 * 119.99854 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.00335 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 0.0005 5 6 4.2726 0.0016 0.0005 6 6 5.7796 0.0027 0.0005 7 1 6.1628 -0.8472 -0.5643 8 6 6.3255 -0.0107 1.4511 9 6 7.7287 0.6191 1.2754 10 6 7.6325 1.3905 -0.0552 11 1 8.3344 0.9753 -0.7785 12 6 7.9365 2.8485 0.1746 13 1 8.1870 3.1983 1.1653 14 6 7.8948 3.7360 -0.8797 15 7 7.5902 3.3100 -2.0862 16 14 8.2708 5.5433 -0.5948 17 1 9.7256 5.7809 -0.7760 18 1 7.5098 6.3668 -1.5683 19 1 7.8763 5.9192 0.7867 20 8 6.2871 1.2420 -0.5390 21 6 3.5816 -1.1968 0.0005 22 17 4.4501 -2.6999 0.0012 23 6 2.1979 -1.1969 -0.0059 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6580 2.1326 -0.0004 28 1 4.1198 2.1339 0.0001 29 1 5.7042 0.6001 2.1061 30 1 6.4013 -1.0304 1.8288 31 1 8.4903 -0.1580 1.2117 32 1 7.9486 1.3012 2.0968 33 1 7.5612 3.9343 -2.8279 34 1 1.6579 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404564608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = -56.811194 kcal Electronic energy + Delta-G solvation = -17920.827310 eV Core-core repulsion = 15036.128998 eV Total energy + Delta-G solvation = -2884.698311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -40.88865 -39.40272 -37.47168 -34.96390 -33.86919 -32.66152 -31.67084 -30.49040 -27.98525 -25.73076 -23.86453 -23.24250 -21.84103 -21.46047 -18.96024 -17.50267 -17.25028 -16.67568 -16.34602 -16.18255 -15.42317 -15.03412 -14.97008 -14.70934 -14.29455 -14.11024 -13.62695 -13.52071 -13.11369 -12.93715 -12.81382 -12.51609 -12.34054 -12.31080 -12.17115 -12.05111 -11.90468 -11.67917 -11.40459 -11.07993 -10.70973 -10.05376 -9.77145 -9.39934 -8.14827 -6.35935 0.16885 0.31686 1.13739 1.40055 1.41292 1.52185 2.40277 2.61235 3.03275 3.47655 3.76044 3.87878 3.98671 4.04721 4.15590 4.26518 4.33154 4.53342 4.63001 4.64676 4.74360 4.87095 4.89910 4.96231 4.98474 5.07459 5.18687 5.26506 5.30364 5.48215 5.56654 5.59488 5.72328 5.91777 6.16718 6.52682 6.94980 7.39761 8.93194 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.006077 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.785027 B = 4606.783201 C = 5470.456948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.120 4.120 4 C -0.097 4.097 5 C -0.087 4.087 6 C 0.096 3.904 7 H 0.060 0.940 8 C -0.123 4.123 9 C -0.138 4.138 10 C 0.196 3.804 11 H -0.010 1.010 12 C -0.552 4.552 13 H 0.066 0.934 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.264 1.264 20 O -0.374 6.374 21 C -0.035 4.035 22 Cl -0.069 7.069 23 C -0.114 4.114 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.261 0.739 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -8.939 5.859 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.115 4.115 5 C -0.087 4.087 6 C 0.038 3.962 7 H 0.078 0.922 8 C -0.161 4.161 9 C -0.176 4.176 10 C 0.140 3.860 11 H 0.007 0.993 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.179 4.179 15 N -0.540 5.540 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.188 1.188 20 O -0.294 6.294 21 C -0.062 4.062 22 Cl -0.040 7.040 23 C -0.132 4.132 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.164 0.836 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.318 -8.887 5.546 16.944 hybrid contribution 0.991 0.758 -0.244 1.272 sum -12.327 -8.129 5.302 15.689 Atomic orbital electron populations 1.20845 0.87628 1.04336 1.03582 1.20239 0.98173 0.91438 0.97848 1.21397 0.92889 0.99459 0.99999 1.21042 0.94989 0.97335 0.98162 1.19625 0.94827 0.92719 1.01570 1.21896 0.90140 0.89771 0.94399 0.92203 1.22935 0.95974 1.01458 0.95704 1.22947 0.96891 0.99047 0.98711 1.20204 0.80825 0.95149 0.89824 0.99277 1.21583 1.48473 0.93779 0.95067 0.91602 1.25970 0.93586 1.03642 0.94731 1.70195 1.47003 1.36352 1.00492 0.85531 0.78441 0.79174 0.78307 1.19494 1.20895 1.18817 1.89197 1.30560 1.37214 1.72384 1.20783 0.93090 0.85828 1.06484 1.98334 1.77275 1.31445 1.96942 1.21139 0.90591 0.99992 1.01478 0.89901 0.89711 0.90156 0.83610 0.87098 0.91468 0.89104 0.91101 0.91103 0.92994 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.84 16 2 C -0.08 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.12 -3.38 9.70 22.27 0.22 -3.17 16 4 C -0.10 -3.61 9.38 22.27 0.21 -3.40 16 5 C -0.09 -3.26 5.12 -19.84 -0.10 -3.36 16 6 C 0.10 4.10 3.08 30.53 0.09 4.19 16 7 H 0.06 2.56 7.13 -2.39 -0.02 2.54 16 8 C -0.12 -4.64 6.58 31.89 0.21 -4.43 16 9 C -0.14 -5.86 6.63 31.59 0.21 -5.65 16 10 C 0.20 10.59 3.26 30.22 0.10 10.68 16 11 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 12 C -0.55 -31.72 8.78 25.60 0.22 -31.49 16 13 H 0.07 3.62 7.33 -2.91 -0.02 3.60 16 14 C 0.02 1.31 5.41 84.65 0.46 1.77 16 15 N -0.90 -55.72 12.92 21.45 0.28 -55.45 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 O -0.37 -20.29 9.26 -148.98 -1.38 -21.67 16 21 C -0.04 -1.09 6.31 22.32 0.14 -0.95 16 22 Cl -0.07 -1.95 27.40 -2.72 -0.07 -2.03 16 23 C -0.11 -2.82 9.49 22.29 0.21 -2.61 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 28 H 0.11 4.85 7.36 -2.91 -0.02 4.83 16 29 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 2.93 7.40 -2.38 -0.02 2.92 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -67.86 300.51 4.51 -63.35 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.09 Total: 10.45 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 2.57 Total: -41.17 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.45 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.38 Total: -21.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.03 kcal Total: -67.86 4.51 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.544 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds