Wall clock time and date at job start Mon Mar 30 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38259 * 119.99301 * 2 1 4 4 C 1.38222 * 120.02347 * 180.29562 * 3 2 1 5 5 C 1.38233 * 120.01513 * 359.70299 * 4 3 2 6 6 C 1.50704 * 120.00780 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.82360 * 144.31636 * 6 5 4 8 8 C 1.54379 * 109.82948 * 265.20556 * 6 5 4 9 9 C 1.55306 * 102.25283 * 140.86897 * 8 6 5 10 10 C 1.54944 * 100.94050 * 325.86787 * 9 8 6 11 11 H 1.09003 * 110.31143 * 277.52457 * 10 9 8 12 12 C 1.50709 * 110.30860 * 155.35982 * 10 9 8 13 13 H 1.07989 * 119.99588 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99962 * 179.97438 * 12 10 9 15 15 N 1.31520 * 119.99551 * 359.97438 * 14 12 10 16 16 Si 1.86790 * 120.00061 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47236 * 89.99688 * 16 14 12 18 18 H 1.48503 * 109.47506 * 209.99713 * 16 14 12 19 19 H 1.48502 * 109.47208 * 330.00326 * 16 14 12 20 20 O 1.43237 * 109.82709 * 23.43395 * 6 5 4 21 21 C 1.38326 * 119.98737 * 0.02562 * 5 4 3 22 22 Cl 1.73597 * 120.01847 * 179.97438 * 21 5 4 23 23 C 1.38190 * 119.99063 * 179.74018 * 2 1 3 24 24 H 1.09000 * 109.47364 * 270.25551 * 1 2 3 25 25 H 1.09004 * 109.46896 * 30.25797 * 1 2 3 26 26 H 1.08998 * 109.46982 * 150.25094 * 1 2 3 27 27 H 1.08003 * 119.98870 * 0.04240 * 3 2 1 28 28 H 1.08002 * 119.99233 * 179.72532 * 4 3 2 29 29 H 1.09003 * 110.84534 * 259.06035 * 8 6 5 30 30 H 1.08999 * 110.84832 * 22.68183 * 8 6 5 31 31 H 1.09000 * 111.12111 * 83.78292 * 9 8 6 32 32 H 1.08999 * 111.12380 * 207.90518 * 9 8 6 33 33 H 0.97003 * 119.99441 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.01169 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 -0.0062 5 6 4.2726 0.0016 -0.0061 6 6 5.7796 0.0026 -0.0123 7 1 6.1522 -0.8286 0.5863 8 6 6.2974 -0.1219 -1.4613 9 6 7.5161 0.8409 -1.4596 10 6 7.0210 1.9402 -0.4865 11 1 6.3838 2.6516 -1.0118 12 6 8.1932 2.6503 0.1405 13 1 9.2009 2.3599 -0.1169 14 6 7.9789 3.6707 1.0428 15 7 6.7515 4.0245 1.3558 16 14 9.4317 4.5503 1.8204 17 1 9.8166 5.7107 0.9777 18 1 9.0546 5.0262 3.1757 19 1 10.5789 3.6132 1.9262 20 8 6.2668 1.2405 0.5186 21 6 3.5816 -1.1967 -0.0005 22 17 4.4500 -2.6999 -0.0011 23 6 2.1978 -1.1969 0.0054 24 1 -0.3634 0.0046 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3633 -0.8922 -0.5099 27 1 1.6579 2.1326 0.0007 28 1 4.1198 2.1339 -0.0107 29 1 6.6107 -1.1438 -1.6748 30 1 5.5418 0.2102 -2.1732 31 1 8.4070 0.3461 -1.0729 32 1 7.6964 1.2481 -2.4545 33 1 6.6007 4.7421 1.9909 34 1 1.6579 -2.1322 0.0093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404564609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:23 Heat of formation + Delta-G solvation = -42.213085 kcal Electronic energy + Delta-G solvation = -17954.910862 eV Core-core repulsion = 15070.845572 eV Total energy + Delta-G solvation = -2884.065290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.55811 -37.75466 -36.24863 -33.18873 -32.22014 -30.97934 -30.37631 -28.95459 -26.46660 -24.12204 -22.43538 -21.60224 -20.34870 -19.96505 -16.71178 -16.26296 -15.85856 -15.15569 -14.69711 -14.57329 -14.02596 -13.77391 -13.44030 -13.26585 -12.72896 -12.45333 -12.31990 -12.08565 -11.78261 -11.54071 -11.11111 -11.03012 -10.91099 -10.79171 -10.55873 -10.43470 -10.37431 -10.21476 -9.76153 -9.12690 -8.60752 -8.52479 -8.25321 -7.89547 -6.03519 -4.15442 1.44082 1.58871 2.38998 3.30144 3.37354 3.40744 3.89588 4.41526 4.86385 4.95963 5.11088 5.19533 5.36060 5.43180 5.48994 5.58673 5.60038 5.69422 5.80937 5.89930 6.06754 6.15008 6.23368 6.31251 6.41627 6.56618 6.60559 6.68236 6.76648 6.81887 7.00849 7.19031 7.55063 7.87606 8.23680 8.59051 8.99268 9.55557 11.04352 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.005845 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.150566 B = 4789.565895 C = 5545.327211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.073 4.073 5 C -0.077 4.077 6 C 0.108 3.892 7 H 0.075 0.925 8 C -0.142 4.142 9 C -0.147 4.147 10 C 0.209 3.791 11 H 0.030 0.970 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.864 5.864 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.349 6.349 21 C -0.031 4.031 22 Cl -0.080 7.080 23 C -0.121 4.121 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.148 0.852 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.261 0.739 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -8.905 -4.137 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.091 4.091 5 C -0.078 4.078 6 C 0.049 3.951 7 H 0.093 0.907 8 C -0.180 4.180 9 C -0.184 4.184 10 C 0.154 3.846 11 H 0.047 0.953 12 C -0.570 4.570 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.501 5.501 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 O -0.268 6.268 21 C -0.058 4.058 22 Cl -0.051 7.051 23 C -0.139 4.139 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.166 0.834 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.016 -8.840 -3.826 13.896 hybrid contribution 0.784 0.210 0.336 0.878 sum -9.232 -8.630 -3.491 13.111 Atomic orbital electron populations 1.20736 0.91042 1.02546 1.02210 1.19763 0.95908 0.92596 1.00819 1.21168 0.94402 0.97430 1.00741 1.21283 0.93428 0.98868 0.95542 1.20419 0.97794 0.91271 0.98355 1.21446 0.87388 0.91850 0.94419 0.90740 1.23052 0.98591 1.00170 0.96186 1.23337 0.96897 0.97587 1.00629 1.20601 0.90319 0.88545 0.85168 0.95262 1.21108 0.91911 1.16527 1.27461 0.91905 1.25064 0.95616 0.96275 0.95806 1.70009 1.19483 1.28088 1.32479 0.86612 0.82884 0.79821 0.78734 1.20553 1.21100 1.19749 1.88928 1.70481 1.29018 1.38390 1.20706 0.92046 0.86353 1.06646 1.98329 1.77229 1.32526 1.97001 1.20728 0.91654 0.98242 1.03300 0.91284 0.91498 0.91781 0.85778 0.83383 0.91472 0.91695 0.91470 0.91811 0.92909 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.09 -1.24 5.88 -104.63 -0.62 -1.85 16 3 C -0.12 -1.84 9.70 -39.58 -0.38 -2.22 16 4 C -0.07 -1.37 9.36 -39.59 -0.37 -1.74 16 5 C -0.08 -1.45 4.94 -104.59 -0.52 -1.97 16 6 C 0.11 2.23 3.24 -27.16 -0.09 2.14 16 7 H 0.07 1.53 7.18 -51.93 -0.37 1.15 16 8 C -0.14 -2.62 6.53 -24.79 -0.16 -2.78 16 9 C -0.15 -3.03 6.53 -24.48 -0.16 -3.19 16 10 C 0.21 5.29 3.22 -26.85 -0.09 5.20 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.53 -14.80 8.79 -34.43 -0.30 -15.10 16 13 H 0.06 1.70 7.75 -52.49 -0.41 1.29 16 14 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 15 N -0.86 -25.15 13.05 55.43 0.72 -24.42 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 20 O -0.35 -8.92 9.21 -35.23 -0.32 -9.25 16 21 C -0.03 -0.51 6.31 -39.50 -0.25 -0.76 16 22 Cl -0.08 -1.19 27.43 -51.86 -1.42 -2.61 16 23 C -0.12 -1.72 9.49 -39.55 -0.38 -2.09 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 28 H 0.15 3.17 7.33 -52.49 -0.38 2.78 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 31 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -29.52 301.29 -9.05 -38.57 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.50 Total: -0.09 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -3.05 Total: -22.98 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.72 Total: -24.42 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.32 Total: -9.25 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.42 Total: -2.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.52 -9.05 -38.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.645 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds