Wall clock time and date at job start Mon Mar 30 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38259 * 119.99301 * 2 1 4 4 C 1.38222 * 120.02347 * 180.29562 * 3 2 1 5 5 C 1.38233 * 120.01513 * 359.70299 * 4 3 2 6 6 C 1.50704 * 120.00780 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.82360 * 144.31636 * 6 5 4 8 8 C 1.54379 * 109.82948 * 265.20556 * 6 5 4 9 9 C 1.55306 * 102.25283 * 140.86897 * 8 6 5 10 10 C 1.54944 * 100.94050 * 325.86787 * 9 8 6 11 11 H 1.09003 * 110.31143 * 277.52457 * 10 9 8 12 12 C 1.50709 * 110.30860 * 155.35982 * 10 9 8 13 13 H 1.07989 * 119.99588 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99962 * 179.97438 * 12 10 9 15 15 N 1.31520 * 119.99551 * 359.97438 * 14 12 10 16 16 Si 1.86790 * 120.00061 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47236 * 89.99688 * 16 14 12 18 18 H 1.48503 * 109.47506 * 209.99713 * 16 14 12 19 19 H 1.48502 * 109.47208 * 330.00326 * 16 14 12 20 20 O 1.43237 * 109.82709 * 23.43395 * 6 5 4 21 21 C 1.38326 * 119.98737 * 0.02562 * 5 4 3 22 22 Cl 1.73597 * 120.01847 * 179.97438 * 21 5 4 23 23 C 1.38190 * 119.99063 * 179.74018 * 2 1 3 24 24 H 1.09000 * 109.47364 * 270.25551 * 1 2 3 25 25 H 1.09004 * 109.46896 * 30.25797 * 1 2 3 26 26 H 1.08998 * 109.46982 * 150.25094 * 1 2 3 27 27 H 1.08003 * 119.98870 * 0.04240 * 3 2 1 28 28 H 1.08002 * 119.99233 * 179.72532 * 4 3 2 29 29 H 1.09003 * 110.84534 * 259.06035 * 8 6 5 30 30 H 1.08999 * 110.84832 * 22.68183 * 8 6 5 31 31 H 1.09000 * 111.12111 * 83.78292 * 9 8 6 32 32 H 1.08999 * 111.12380 * 207.90518 * 9 8 6 33 33 H 0.97003 * 119.99441 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.01169 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 -0.0062 5 6 4.2726 0.0016 -0.0061 6 6 5.7796 0.0026 -0.0123 7 1 6.1522 -0.8286 0.5863 8 6 6.2974 -0.1219 -1.4613 9 6 7.5161 0.8409 -1.4596 10 6 7.0210 1.9402 -0.4865 11 1 6.3838 2.6516 -1.0118 12 6 8.1932 2.6503 0.1405 13 1 9.2009 2.3599 -0.1169 14 6 7.9789 3.6707 1.0428 15 7 6.7515 4.0245 1.3558 16 14 9.4317 4.5503 1.8204 17 1 9.8166 5.7107 0.9777 18 1 9.0546 5.0262 3.1757 19 1 10.5789 3.6132 1.9262 20 8 6.2668 1.2405 0.5186 21 6 3.5816 -1.1967 -0.0005 22 17 4.4500 -2.6999 -0.0011 23 6 2.1978 -1.1969 0.0054 24 1 -0.3634 0.0046 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3633 -0.8922 -0.5099 27 1 1.6579 2.1326 0.0007 28 1 4.1198 2.1339 -0.0107 29 1 6.6107 -1.1438 -1.6748 30 1 5.5418 0.2102 -2.1732 31 1 8.4070 0.3461 -1.0729 32 1 7.6964 1.2481 -2.4545 33 1 6.6007 4.7421 1.9909 34 1 1.6579 -2.1322 0.0093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404564609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:20 Heat of formation + Delta-G solvation = -57.811006 kcal Electronic energy + Delta-G solvation = -17955.587239 eV Core-core repulsion = 15070.845572 eV Total energy + Delta-G solvation = -2884.741666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -40.96048 -39.34587 -37.45797 -34.94908 -33.81992 -32.69243 -31.65238 -30.51853 -27.97920 -25.81342 -23.71422 -23.06416 -22.14689 -21.40744 -18.69466 -17.75989 -17.33642 -16.68604 -16.36123 -16.13932 -15.62601 -14.92406 -14.77505 -14.65988 -14.28811 -13.90028 -13.69949 -13.57808 -13.11195 -12.89903 -12.78183 -12.43576 -12.34691 -12.31524 -12.22712 -12.13450 -11.90449 -11.77257 -11.44519 -11.03725 -10.71049 -9.99346 -9.74677 -9.37580 -8.15685 -6.35884 0.18789 0.33130 1.15042 1.40399 1.42154 1.52685 2.40711 2.62453 3.04939 3.58883 3.71090 3.82896 3.95349 4.03636 4.15662 4.27920 4.34905 4.52550 4.61652 4.67375 4.76450 4.87575 4.88815 4.91214 5.00263 5.09012 5.14311 5.25031 5.29770 5.49798 5.58538 5.65718 5.75278 5.92968 6.17315 6.59296 7.00107 7.39903 8.92302 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.005845 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.150566 B = 4789.565895 C = 5545.327211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.101 4.101 6 C 0.102 3.898 7 H 0.073 0.927 8 C -0.127 4.127 9 C -0.139 4.139 10 C 0.204 3.796 11 H -0.004 1.004 12 C -0.556 4.556 13 H 0.065 0.935 14 C 0.024 3.976 15 N -0.900 5.900 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.266 1.266 20 O -0.382 6.382 21 C -0.036 4.036 22 Cl -0.068 7.068 23 C -0.115 4.115 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.262 0.738 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -10.485 -4.484 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.117 4.117 5 C -0.102 4.102 6 C 0.043 3.957 7 H 0.090 0.910 8 C -0.165 4.165 9 C -0.177 4.177 10 C 0.149 3.851 11 H 0.014 0.986 12 C -0.593 4.593 13 H 0.083 0.917 14 C -0.178 4.178 15 N -0.537 5.537 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.190 1.190 20 O -0.302 6.302 21 C -0.062 4.062 22 Cl -0.039 7.039 23 C -0.133 4.133 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.159 0.841 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.181 -10.432 -4.187 15.855 hybrid contribution 1.051 0.639 0.437 1.306 sum -10.129 -9.793 -3.750 14.580 Atomic orbital electron populations 1.20838 0.87679 1.04269 1.03547 1.20215 0.98139 0.91416 0.98125 1.21366 0.93004 0.99353 1.00203 1.21028 0.94995 0.97367 0.98330 1.20220 0.96620 0.92432 1.00945 1.21586 0.89052 0.89609 0.95417 0.90968 1.22981 0.97465 1.01016 0.95019 1.23224 0.97685 0.96594 1.00175 1.20450 0.89292 0.89546 0.85856 0.98589 1.21537 0.92776 1.17278 1.27757 0.91691 1.25945 0.98373 0.97140 0.96378 1.70161 1.21628 1.28739 1.33194 0.85528 0.79400 0.78808 0.77686 1.19336 1.20984 1.19044 1.88825 1.71041 1.31061 1.39273 1.20778 0.92998 0.85947 1.06513 1.98329 1.77248 1.31340 1.96942 1.21145 0.90775 0.99838 1.01535 0.89930 0.90317 0.89650 0.84089 0.87610 0.88750 0.91159 0.91370 0.90119 0.92961 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.01 71.24 0.71 -0.96 16 2 C -0.08 -1.94 5.88 -19.87 -0.12 -2.06 16 3 C -0.12 -3.68 9.70 22.27 0.22 -3.46 16 4 C -0.10 -3.87 9.36 22.26 0.21 -3.66 16 5 C -0.10 -3.86 4.94 -19.84 -0.10 -3.96 16 6 C 0.10 4.31 3.24 30.32 0.10 4.40 16 7 H 0.07 3.00 7.18 -2.39 -0.02 2.99 16 8 C -0.13 -4.65 6.53 31.85 0.21 -4.44 16 9 C -0.14 -5.80 6.53 32.05 0.21 -5.59 16 10 C 0.20 10.83 3.22 30.52 0.10 10.93 16 11 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 12 C -0.56 -31.92 8.79 25.60 0.23 -31.69 16 13 H 0.06 3.58 7.75 -2.92 -0.02 3.56 16 14 C 0.02 1.37 5.43 84.65 0.46 1.83 16 15 N -0.90 -54.68 13.05 21.45 0.28 -54.40 16 16 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 O -0.38 -20.58 9.21 -148.98 -1.37 -21.95 16 21 C -0.04 -1.12 6.31 22.33 0.14 -0.98 16 22 Cl -0.07 -1.89 27.43 -2.72 -0.07 -1.97 16 23 C -0.11 -2.93 9.49 22.29 0.21 -2.72 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 26 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 28 H 0.11 5.00 7.33 -2.91 -0.02 4.98 16 29 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.07 2.48 7.84 -2.39 -0.02 2.46 16 31 H 0.07 2.80 8.04 -2.39 -0.02 2.78 16 32 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -66.75 301.29 4.52 -62.23 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.09 Total: 11.89 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 2.57 Total: -42.36 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.28 Total: -54.40 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -1.37 Total: -21.95 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.97 kcal Total: -66.75 4.52 -62.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404564609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.419 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds