Wall clock time and date at job start Mon Mar 30 2020 07:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47438 * 2 1 4 4 H 1.09002 * 109.46844 * 305.00106 * 3 2 1 5 5 C 1.50699 * 109.47625 * 185.00060 * 3 2 1 6 6 H 1.07996 * 120.00429 * 240.00558 * 5 3 2 7 7 C 1.37887 * 119.99702 * 59.99880 * 5 3 2 8 8 N 1.31509 * 119.99730 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99836 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47467 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47265 * 119.99838 * 9 7 5 12 12 H 1.48508 * 109.46715 * 240.00094 * 9 7 5 13 13 C 1.50698 * 109.47077 * 64.99934 * 3 2 1 14 14 O 1.21271 * 119.99775 * 95.00336 * 13 3 2 15 15 C 1.47074 * 120.00203 * 275.00041 * 13 3 2 16 16 C 1.39907 * 120.18469 * 0.02562 * 15 13 3 17 17 C 1.37817 * 119.84132 * 180.02562 * 16 15 13 18 18 C 1.38473 * 120.20780 * 0.27870 * 17 16 15 19 19 C 1.50703 * 119.81009 * 179.72124 * 18 17 16 20 20 C 1.38300 * 120.37931 * 359.44532 * 18 17 16 21 21 C 1.38100 * 120.15413 * 0.54740 * 20 18 17 22 22 Cl 1.73598 * 120.10926 * 179.70482 * 21 20 18 23 23 H 1.09001 * 109.47096 * 299.99853 * 1 2 3 24 24 H 1.08999 * 109.47435 * 59.99829 * 1 2 3 25 25 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46888 * 239.99635 * 2 1 3 27 27 H 1.09005 * 109.47122 * 120.00489 * 2 1 3 28 28 H 0.97004 * 119.99987 * 179.97438 * 8 7 5 29 29 H 1.08007 * 120.08226 * 359.97438 * 16 15 13 30 30 H 1.08002 * 119.89279 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.46992 * 89.99943 * 19 18 17 32 32 H 1.09004 * 109.47386 * 210.00324 * 19 18 17 33 33 H 1.09001 * 109.46971 * 329.99935 * 19 18 17 34 34 H 1.08001 * 119.92614 * 180.30184 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2281 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8799 -1.3813 10 1 6.5988 1.5452 -0.1939 11 1 6.4962 -0.5191 -1.4628 12 1 6.3998 1.6157 -2.6094 13 6 1.6414 2.1162 1.2877 14 8 2.4159 2.1482 2.2203 15 6 0.3131 2.7349 1.4134 16 6 -0.5837 2.6997 0.3401 17 6 -1.8264 3.2822 0.4654 18 6 -2.1872 3.9065 1.6476 19 6 -3.5461 4.5460 1.7727 20 6 -1.3099 3.9415 2.7161 21 6 -0.0608 3.3627 2.6073 22 17 1.0424 3.4140 3.9467 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8291 -0.0604 -2.9504 29 1 -0.3025 2.2180 -0.5848 30 1 -2.5192 3.2559 -0.3627 31 1 -4.2585 3.8141 2.1534 32 1 -3.4888 5.3894 2.4609 33 1 -3.8738 4.8972 0.7942 34 1 -1.6007 4.4262 3.6364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404641405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:50 Heat of formation + Delta-G solvation = -40.431036 kcal Electronic energy + Delta-G solvation = -18056.057911 eV Core-core repulsion = 15172.069897 eV Total energy + Delta-G solvation = -2883.988014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17114 -39.29580 -37.44662 -36.34670 -34.23718 -33.13419 -31.70396 -29.72854 -28.48580 -25.68895 -24.02646 -23.44107 -22.28484 -20.28026 -18.56974 -17.84302 -16.97757 -16.59232 -16.31090 -15.99429 -15.47710 -14.99193 -14.91342 -14.56830 -14.37544 -13.96886 -13.57630 -13.44001 -13.23554 -13.09007 -12.82528 -12.68767 -12.57225 -12.31344 -12.25046 -12.13445 -11.92023 -11.64266 -11.50504 -10.96084 -10.50729 -9.92785 -9.79955 -9.62255 -8.15027 -6.26152 -0.33265 0.23714 1.17535 1.36972 1.39491 1.51775 1.64536 2.41049 2.72516 3.12466 3.34147 3.74867 3.92488 4.20923 4.26056 4.43678 4.45530 4.52972 4.63641 4.75021 4.85741 4.91639 4.92608 5.01848 5.21286 5.25666 5.28218 5.32375 5.35027 5.49055 5.60959 5.74442 5.84374 5.98310 6.26518 6.77912 6.94408 7.40632 8.89745 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.006287 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.322334 B = 4452.893287 C = 5155.257041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.011 3.989 4 H 0.045 0.955 5 C -0.533 4.533 6 H 0.041 0.959 7 C 0.024 3.976 8 N -0.906 5.906 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.272 1.272 13 C 0.389 3.611 14 O -0.478 6.478 15 C -0.187 4.187 16 C -0.057 4.057 17 C -0.129 4.129 18 C -0.040 4.040 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.006 4.006 22 Cl -0.063 7.063 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 6.631 4.613 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.008 4.008 4 H 0.063 0.937 5 C -0.571 4.571 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.545 5.545 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.197 1.197 13 C 0.268 3.732 14 O -0.355 6.355 15 C -0.189 4.189 16 C -0.075 4.075 17 C -0.147 4.147 18 C -0.041 4.041 19 C -0.170 4.170 20 C -0.152 4.152 21 C -0.033 4.033 22 Cl -0.034 7.034 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.892 6.564 5.056 17.923 hybrid contribution 1.753 -0.277 0.041 1.775 sum -14.140 6.287 5.097 16.292 Atomic orbital electron populations 1.22137 0.95333 1.01616 1.01266 1.21317 0.95020 0.96655 1.01116 1.19106 0.96021 0.94413 0.91287 0.93692 1.21315 0.92108 1.38332 1.05311 0.94041 1.25529 1.02155 0.94650 0.95186 1.69927 1.36126 1.38767 1.09671 0.85628 0.80953 0.78014 0.77817 1.20644 1.20068 1.19701 1.23300 0.84905 0.75195 0.89805 1.90420 1.53355 1.50438 1.41272 1.20660 0.97851 1.04929 0.95422 1.21922 0.93096 0.95019 0.97505 1.21496 0.96066 0.98021 0.99106 1.20523 0.97105 0.94636 0.91819 1.20956 0.90468 1.00889 1.04639 1.21164 0.90950 1.01710 1.01377 1.21500 0.92831 0.99959 0.89039 1.98377 1.63602 1.96838 1.44607 0.93211 0.91410 0.92451 0.90078 0.96461 0.92535 0.83610 0.81513 0.89054 0.90051 0.89265 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 8.23 71.98 0.59 -4.67 16 2 C -0.10 -4.86 5.23 30.59 0.16 -4.70 16 3 C 0.01 0.54 1.76 -12.29 -0.02 0.52 16 4 H 0.05 2.30 6.74 -2.39 -0.02 2.29 16 5 C -0.53 -31.10 8.33 25.60 0.21 -30.89 16 6 H 0.04 2.58 7.03 -2.91 -0.02 2.56 16 7 C 0.02 1.37 5.29 84.66 0.45 1.81 16 8 N -0.91 -50.61 11.29 21.45 0.24 -50.37 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.39 18.50 5.87 28.01 0.16 18.67 16 14 O -0.48 -25.35 13.44 -3.00 -0.04 -25.39 16 15 C -0.19 -7.06 4.92 -20.13 -0.10 -7.15 16 16 C -0.06 -1.74 7.06 22.57 0.16 -1.58 16 17 C -0.13 -2.80 9.67 22.23 0.22 -2.59 16 18 C -0.04 -0.80 5.89 -19.79 -0.12 -0.91 16 19 C -0.11 -1.22 10.00 71.24 0.71 -0.51 16 20 C -0.13 -3.28 9.46 22.25 0.21 -3.07 16 21 C -0.01 -0.21 6.36 22.66 0.14 -0.07 16 22 Cl -0.06 -2.32 26.03 -2.72 -0.07 -2.39 16 23 H 0.05 1.72 5.31 -2.39 -0.01 1.71 16 24 H 0.07 2.20 6.46 -2.39 -0.02 2.18 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 27 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.15 4.55 4.25 -2.91 -0.01 4.54 16 30 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.73 8.08 -2.38 -0.02 0.71 16 33 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -67.89 290.47 6.06 -61.84 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.12 Total: 4.27 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 2.78 Total: -35.14 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.39 kcal Total: -67.89 6.06 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404641405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.408 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds