Wall clock time and date at job start Mon Mar 30 2020 07:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35638 * 117.00396 * 2 1 4 4 C 1.38564 * 120.12540 * 0.02562 * 3 2 1 5 5 C 1.38224 * 120.24535 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.49915 * 359.97438 * 5 4 3 7 7 C 1.38514 * 120.24491 * 359.97438 * 6 5 4 8 8 O 1.35642 * 120.12403 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00455 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47283 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46875 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00077 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99739 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00255 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47174 * 90.00114 * 15 13 11 17 17 H 1.48500 * 109.47338 * 209.99817 * 15 13 11 18 18 H 1.48495 * 109.47203 * 329.99775 * 15 13 11 19 19 C 1.40300 * 120.13011 * 179.72699 * 3 2 1 20 20 C 1.47088 * 120.23905 * 359.97438 * 19 3 2 21 21 O 1.21544 * 119.99680 * 89.99931 * 20 19 3 22 22 O 1.34788 * 119.99965 * 270.00168 * 20 19 3 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99691 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99812 * 1 2 3 26 26 H 1.07999 * 119.87312 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.74966 * 180.02562 * 5 4 3 28 28 H 1.07995 * 119.87754 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.46931 * 299.99906 * 9 8 7 30 30 H 1.09007 * 109.47024 * 59.99645 * 9 8 7 31 31 H 1.09002 * 109.47217 * 299.99923 * 10 9 8 32 32 H 1.08999 * 109.46902 * 59.99933 * 10 9 8 33 33 H 0.97007 * 119.99997 * 179.97438 * 14 13 11 34 34 H 0.96704 * 116.99904 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2928 2.3723 0.0005 5 6 1.9179 3.6051 0.0000 6 6 3.2979 3.6923 -0.0005 7 6 4.0696 2.5421 0.0000 8 8 5.4231 2.6305 0.0000 9 6 5.9876 3.9432 0.0000 10 6 7.5143 3.8420 0.0006 11 6 8.1095 5.2264 0.0013 12 1 7.4635 6.0920 0.0008 13 6 9.4787 5.3881 0.0014 14 7 10.2653 4.3341 0.0014 15 14 10.2166 7.1042 0.0014 16 1 10.4120 7.5589 1.4015 17 1 11.5261 7.0800 -0.6984 18 1 9.2984 8.0378 -0.6987 19 6 3.4458 1.2850 0.0058 20 6 4.2547 0.0566 0.0124 21 8 4.5934 -0.4537 -1.0374 22 8 4.6203 -0.5032 1.1828 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2143 2.3158 0.0005 27 1 1.3239 4.5072 0.0008 28 1 3.7757 4.6608 -0.0005 29 1 5.6591 4.4800 -0.8900 30 1 5.6591 4.4800 0.8900 31 1 7.8424 3.3054 0.8908 32 1 7.8431 3.3050 -0.8891 33 1 11.2287 4.4479 0.0011 34 1 5.1520 -1.3097 1.1365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405247077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:26 Heat of formation + Delta-G solvation = -146.616564 kcal Electronic energy + Delta-G solvation = -19672.258811 eV Core-core repulsion = 16342.957082 eV Total energy + Delta-G solvation = -3329.301729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80423 -39.29909 -39.00241 -36.42979 -35.72689 -33.43097 -31.58643 -30.33158 -29.24662 -27.62157 -25.12070 -24.55136 -22.28651 -21.41319 -20.62799 -18.77871 -17.84500 -16.98401 -16.77940 -16.64337 -16.01657 -15.85767 -15.43553 -14.90027 -14.83225 -14.68467 -14.26542 -13.35726 -13.04133 -12.82380 -12.45321 -12.28824 -11.98162 -11.95415 -11.49709 -11.23581 -11.11452 -10.98411 -10.84547 -10.66541 -10.33908 -9.96249 -9.72448 -9.34509 -8.61640 -8.46639 -8.10857 -6.12311 -4.17779 1.05952 1.39746 2.39840 2.78501 3.24296 3.26359 3.32464 3.35077 3.63150 3.76628 4.38636 4.64752 4.87309 4.90304 4.92127 5.11019 5.13031 5.23730 5.24132 5.39686 5.67293 5.85905 5.92906 6.00903 6.17514 6.32531 6.37593 6.57986 6.68448 7.10320 7.40293 7.59071 7.68461 7.92030 8.12460 8.18856 8.87527 9.46792 10.99176 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.004228 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.807910 B = 6621.239881 C = 7367.508372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.202 3.798 4 C -0.260 4.260 5 C -0.017 4.017 6 C -0.248 4.248 7 C 0.223 3.777 8 O -0.306 6.306 9 C 0.063 3.937 10 C 0.025 3.975 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.888 5.888 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.191 4.191 20 C 0.559 3.441 21 O -0.505 6.505 22 O -0.507 6.507 23 H 0.101 0.899 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.057 -5.439 1.957 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.155 3.845 4 C -0.279 4.279 5 C -0.035 4.035 6 C -0.267 4.267 7 C 0.174 3.826 8 O -0.217 6.217 9 C -0.010 4.010 10 C -0.013 4.013 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.526 5.526 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.194 4.194 20 C 0.401 3.599 21 O -0.392 6.392 22 O -0.318 6.318 23 H 0.120 0.880 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.161 0.839 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -19.750 -5.623 1.679 20.604 hybrid contribution 0.533 0.740 -0.037 0.913 sum -19.217 -4.883 1.642 19.896 Atomic orbital electron populations 1.23128 0.77554 1.04199 1.01747 1.86016 1.22067 1.26596 1.87815 1.18377 0.89273 0.84803 0.91999 1.20924 0.99966 0.91627 1.15333 1.20843 0.93760 0.97093 0.91782 1.21233 0.94530 0.98120 1.12772 1.18643 0.84391 0.91150 0.88435 1.86155 1.15080 1.35176 1.85332 1.23532 0.98265 0.78948 1.00272 1.19155 0.84736 0.98260 0.99107 1.20933 0.91707 0.91381 1.52601 0.92251 1.24993 0.97099 0.97233 0.94826 1.69980 1.04140 1.29051 1.49415 0.86466 0.78630 0.83942 0.78220 1.20473 1.21037 1.19734 1.17248 0.89873 0.90045 1.22227 1.20191 0.75925 0.82712 0.81039 1.90888 1.52524 1.62437 1.33356 1.84688 1.67520 1.44380 1.35225 0.88029 0.92221 0.92178 0.84783 0.84965 0.83943 0.92430 0.92391 0.95251 0.95237 0.92634 0.73355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.06 9.95 -18.61 -0.19 -4.24 16 3 C 0.20 2.90 6.70 -38.69 -0.26 2.64 16 4 C -0.26 -2.97 9.02 -39.47 -0.36 -3.33 16 5 C -0.02 -0.19 10.02 -39.57 -0.40 -0.59 16 6 C -0.25 -3.62 9.02 -39.47 -0.36 -3.98 16 7 C 0.22 4.00 6.70 -38.69 -0.26 3.75 16 8 O -0.31 -6.43 9.59 -18.63 -0.18 -6.60 16 9 C 0.06 1.33 4.68 37.16 0.17 1.50 16 10 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 11 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.19 -3.34 5.77 -104.74 -0.60 -3.95 16 20 C 0.56 10.29 6.83 34.32 0.23 10.53 16 21 O -0.50 -10.53 17.90 -19.30 -0.35 -10.87 16 22 O -0.51 -7.76 13.44 -40.73 -0.55 -8.31 16 23 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 25 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.13 1.08 6.28 -52.49 -0.33 0.75 16 27 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 28 H 0.14 1.95 6.28 -52.49 -0.33 1.62 16 29 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 30 H 0.06 1.12 7.66 -51.92 -0.40 0.72 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.41 4.19 9.11 45.56 0.42 4.61 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -34.55 304.33 -5.41 -39.96 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.07 Total: 0.06 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.39 Total: -4.98 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.26 Total: -30.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.55 -5.41 -39.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405247077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.654 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds