Wall clock time and date at job start Mon Mar 30 2020 08:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40398 * 120.20696 * 80.55438 * 3 2 1 5 5 N 1.39037 * 120.17163 * 0.02653 * 4 3 2 6 6 C 1.46497 * 119.99817 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47087 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47306 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99766 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99972 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99876 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47045 * 60.00305 * 12 10 8 14 14 H 1.48497 * 109.47341 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47244 * 300.00118 * 12 10 8 16 16 C 1.38840 * 119.65420 * 180.02562 * 4 3 2 17 17 C 1.38060 * 120.07513 * 0.02562 * 16 4 3 18 18 C 1.38527 * 120.41862 * 359.97438 * 17 16 4 19 19 C 1.37841 * 120.34627 * 359.72232 * 18 17 16 20 20 C 1.50697 * 120.04487 * 180.30191 * 19 18 17 21 21 F 1.39898 * 109.47219 * 120.25609 * 20 19 18 22 22 F 1.39898 * 109.47030 * 240.26004 * 20 19 18 23 23 H 0.97001 * 119.99727 * 359.97438 * 5 4 3 24 24 H 1.08995 * 109.47307 * 299.99916 * 6 5 4 25 25 H 1.09002 * 109.47253 * 59.99778 * 6 5 4 26 26 H 1.09003 * 109.47105 * 300.00013 * 7 6 5 27 27 H 1.08994 * 109.47118 * 59.99673 * 7 6 5 28 28 H 0.96998 * 119.99927 * 179.97438 * 11 10 8 29 29 H 1.08004 * 119.96222 * 179.97438 * 16 4 3 30 30 H 1.08000 * 119.79150 * 179.97438 * 17 16 4 31 31 H 1.08005 * 119.82834 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.46842 * 0.25820 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2744 -0.1982 -1.1969 5 7 2.5873 -0.3963 -2.3893 6 6 3.3283 -0.6028 -3.6360 7 6 2.3419 -0.7953 -4.7896 8 6 3.1041 -1.0083 -6.0721 9 1 4.1841 -1.0062 -6.0651 10 6 2.4227 -1.2049 -7.2545 11 7 1.1076 -1.2070 -7.2630 12 14 3.3675 -1.4683 -8.8443 13 1 4.2223 -2.6761 -8.7178 14 1 2.4101 -1.6540 -9.9641 15 1 4.2212 -0.2837 -9.1148 16 6 4.6628 -0.1959 -1.1836 17 6 5.3430 0.0005 0.0017 18 6 4.6490 0.1970 1.1844 19 6 3.2706 0.2042 1.1901 20 6 2.5226 0.4253 2.4795 21 9 1.7194 1.5648 2.3631 22 9 1.7180 -0.6871 2.7484 23 1 1.6173 -0.3977 -2.3955 24 1 3.9549 0.2666 -3.8346 25 1 3.9558 -1.4893 -3.5432 26 1 1.7155 -1.6650 -4.5909 27 1 1.7141 0.0909 -4.8826 28 1 0.6283 -1.3449 -8.0949 29 1 5.2112 -0.3487 -2.1014 30 1 6.4230 0.0010 0.0068 31 1 5.1908 0.3501 2.1060 32 1 3.2344 0.5641 3.2932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570343099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:13 Heat of formation + Delta-G solvation = -57.505476 kcal Electronic energy + Delta-G solvation = -18940.325389 eV Core-core repulsion = 15536.093042 eV Total energy + Delta-G solvation = -3404.232347 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.10814 -47.09199 -39.85419 -36.23615 -36.14134 -33.30528 -31.97108 -31.04781 -28.49228 -26.43709 -24.78176 -23.46050 -21.83748 -20.74665 -18.87913 -17.86641 -17.32316 -17.24589 -16.44416 -15.98930 -15.37534 -14.85229 -14.65098 -14.55324 -14.07111 -13.78245 -13.56825 -13.45661 -13.30288 -12.98317 -12.63850 -12.40016 -12.36217 -12.04007 -11.74875 -11.34640 -11.24404 -10.93242 -10.76451 -10.72778 -9.84968 -9.74020 -9.42518 -9.14695 -8.52289 -7.41899 -6.16875 -4.22031 0.67678 1.35046 2.80273 3.03774 3.24433 3.29378 3.30545 3.41562 3.65078 3.81137 3.92025 4.06143 4.33613 4.39955 4.87451 4.89841 5.08921 5.19901 5.24468 5.41083 5.49319 5.91995 6.05145 6.05640 6.07836 6.30111 6.49320 6.57156 7.20232 7.47815 7.47872 7.65320 7.74789 7.81418 8.16604 8.83275 9.43544 10.94552 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.003923 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.348205 B = 7135.850505 C = 7791.087953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.250 3.750 3 C -0.095 4.095 4 C 0.275 3.725 5 N -0.720 5.720 6 C 0.118 3.882 7 C 0.011 3.989 8 C -0.527 4.527 9 H 0.060 0.940 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.899 3.101 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.180 4.180 17 C -0.043 4.043 18 C -0.160 4.160 19 C -0.078 4.078 20 C 0.306 3.694 21 F -0.197 7.197 22 F -0.197 7.197 23 H 0.401 0.599 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.264 0.736 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.916 3.012 18.033 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.064 4.064 3 C -0.104 4.104 4 C 0.160 3.840 5 N -0.341 5.341 6 C -0.005 4.005 7 C -0.026 4.026 8 C -0.565 4.565 9 H 0.078 0.922 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.203 4.203 17 C -0.063 4.063 18 C -0.181 4.181 19 C -0.082 4.082 20 C 0.253 3.747 21 F -0.178 7.178 22 F -0.178 7.178 23 H 0.237 0.763 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.037 2.949 17.652 19.618 hybrid contribution 0.290 -0.162 -0.986 1.040 sum 8.326 2.787 16.666 18.837 Atomic orbital electron populations 1.81208 1.11818 1.09680 1.06285 1.25441 0.92540 0.93763 0.94668 1.15163 0.84310 1.17515 0.93428 1.17829 0.91750 0.89367 0.85052 1.45474 1.09345 1.73841 1.05485 1.21941 0.96435 0.99841 0.82240 1.19306 0.94302 0.97946 0.91060 1.20931 0.93044 1.50659 0.91894 0.92225 1.25011 0.94890 0.94939 0.99379 1.69947 1.06394 1.48976 1.27584 0.86553 0.79559 0.78838 0.82464 1.20059 1.21185 1.20067 1.20859 0.91399 1.08093 0.99954 1.21043 1.00070 0.93894 0.91291 1.20485 0.91409 1.06977 0.99247 1.20040 0.94638 1.01333 0.92204 1.20550 0.85156 0.72390 0.96638 1.93038 1.76355 1.51199 1.97248 1.93038 1.76288 1.53660 1.94859 0.76344 0.92250 0.92253 0.95861 0.95861 0.92617 0.84214 0.84816 0.85006 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.72 18.54 41.83 0.78 -6.94 16 2 C 0.25 4.20 11.96 -22.47 -0.27 3.93 16 3 C -0.09 -1.35 5.74 -106.61 -0.61 -1.96 16 4 C 0.27 3.93 6.66 -83.56 -0.56 3.37 16 5 N -0.72 -12.01 5.64 -58.42 -0.33 -12.34 16 6 C 0.12 2.16 4.84 -4.04 -0.02 2.14 16 7 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 8 C -0.53 -13.89 9.11 -34.44 -0.31 -14.21 16 9 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 12 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 16 C -0.18 -2.09 9.29 -39.42 -0.37 -2.45 16 17 C -0.04 -0.38 10.03 -39.54 -0.40 -0.77 16 18 C -0.16 -1.35 9.65 -39.62 -0.38 -1.73 16 19 C -0.08 -0.88 5.40 -104.22 -0.56 -1.44 16 20 C 0.31 3.18 5.02 36.00 0.18 3.36 16 21 F -0.20 -2.56 16.55 2.25 0.04 -2.52 16 22 F -0.20 -2.56 16.54 2.25 0.04 -2.52 16 23 H 0.40 7.11 7.33 -40.82 -0.30 6.81 16 24 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 25 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.14 1.54 6.72 -52.48 -0.35 1.19 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.65 7.94 -52.48 -0.42 0.23 16 32 H 0.12 0.69 7.87 -51.93 -0.41 0.28 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -30.82 295.79 -5.95 -36.77 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.11 Total: 0.69 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.54 Total: -8.09 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 1.18 Total: -44.44 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.07 Total: -5.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.82 -5.95 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570343099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.736 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds