Wall clock time and date at job start Mon Mar 30 2020 08:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40398 * 120.20696 * 80.55438 * 3 2 1 5 5 N 1.39037 * 120.17163 * 0.02653 * 4 3 2 6 6 C 1.46497 * 119.99817 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47087 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47306 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99766 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99972 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99876 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47045 * 60.00305 * 12 10 8 14 14 H 1.48497 * 109.47341 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47244 * 300.00118 * 12 10 8 16 16 C 1.38840 * 119.65420 * 180.02562 * 4 3 2 17 17 C 1.38060 * 120.07513 * 0.02562 * 16 4 3 18 18 C 1.38527 * 120.41862 * 359.97438 * 17 16 4 19 19 C 1.37841 * 120.34627 * 359.72232 * 18 17 16 20 20 C 1.50697 * 120.04487 * 180.30191 * 19 18 17 21 21 F 1.39898 * 109.47219 * 120.25609 * 20 19 18 22 22 F 1.39898 * 109.47030 * 240.26004 * 20 19 18 23 23 H 0.97001 * 119.99727 * 359.97438 * 5 4 3 24 24 H 1.08995 * 109.47307 * 299.99916 * 6 5 4 25 25 H 1.09002 * 109.47253 * 59.99778 * 6 5 4 26 26 H 1.09003 * 109.47105 * 300.00013 * 7 6 5 27 27 H 1.08994 * 109.47118 * 59.99673 * 7 6 5 28 28 H 0.96998 * 119.99927 * 179.97438 * 11 10 8 29 29 H 1.08004 * 119.96222 * 179.97438 * 16 4 3 30 30 H 1.08000 * 119.79150 * 179.97438 * 17 16 4 31 31 H 1.08005 * 119.82834 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.46842 * 0.25820 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2744 -0.1982 -1.1969 5 7 2.5873 -0.3963 -2.3893 6 6 3.3283 -0.6028 -3.6360 7 6 2.3419 -0.7953 -4.7896 8 6 3.1041 -1.0083 -6.0721 9 1 4.1841 -1.0062 -6.0651 10 6 2.4227 -1.2049 -7.2545 11 7 1.1076 -1.2070 -7.2630 12 14 3.3675 -1.4683 -8.8443 13 1 4.2223 -2.6761 -8.7178 14 1 2.4101 -1.6540 -9.9641 15 1 4.2212 -0.2837 -9.1148 16 6 4.6628 -0.1959 -1.1836 17 6 5.3430 0.0005 0.0017 18 6 4.6490 0.1970 1.1844 19 6 3.2706 0.2042 1.1901 20 6 2.5226 0.4253 2.4795 21 9 1.7194 1.5648 2.3631 22 9 1.7180 -0.6871 2.7484 23 1 1.6173 -0.3977 -2.3955 24 1 3.9549 0.2666 -3.8346 25 1 3.9558 -1.4893 -3.5432 26 1 1.7155 -1.6650 -4.5909 27 1 1.7141 0.0909 -4.8826 28 1 0.6283 -1.3449 -8.0949 29 1 5.2112 -0.3487 -2.1014 30 1 6.4230 0.0010 0.0068 31 1 5.1908 0.3501 2.1060 32 1 3.2344 0.5641 3.2932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570343099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:12 Heat of formation + Delta-G solvation = -76.573606 kcal Electronic energy + Delta-G solvation = -18941.152245 eV Core-core repulsion = 15536.093042 eV Total energy + Delta-G solvation = -3405.059203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.97987 -47.99363 -40.82487 -37.54541 -37.37785 -35.16714 -32.86367 -32.53951 -29.92218 -27.27026 -26.52703 -24.38593 -23.36701 -21.91786 -19.93160 -18.88957 -18.48396 -18.20165 -17.96226 -17.10459 -16.49529 -16.36284 -16.01092 -15.72670 -15.22751 -15.01271 -14.73409 -14.39276 -14.37595 -14.22481 -14.10175 -13.77018 -13.65760 -13.30721 -12.90606 -12.74768 -12.63010 -12.47634 -12.37524 -11.81312 -11.59310 -11.41465 -11.11923 -10.59519 -10.02786 -8.52831 -8.25398 -6.38001 -0.25203 0.48451 1.42154 1.45160 1.52953 1.53713 1.94141 2.26415 2.45635 2.73971 2.82155 2.95195 3.10121 3.29232 3.63515 4.05541 4.13584 4.28561 4.30655 4.44527 4.50250 4.58946 4.71405 4.84195 5.18422 5.29350 5.34870 5.50978 5.51571 5.67761 5.81081 6.03156 6.21402 6.42006 6.49653 6.78759 7.33013 8.87050 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.003923 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.348205 B = 7135.850505 C = 7791.087953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.264 3.736 3 C -0.124 4.124 4 C 0.254 3.746 5 N -0.739 5.739 6 C 0.142 3.858 7 C 0.015 3.985 8 C -0.540 4.540 9 H 0.076 0.924 10 C -0.001 4.001 11 N -0.936 5.936 12 Si 0.971 3.029 13 H -0.263 1.263 14 H -0.289 1.289 15 H -0.263 1.263 16 C -0.187 4.187 17 C -0.025 4.025 18 C -0.131 4.131 19 C -0.088 4.088 20 C 0.295 3.705 21 F -0.217 7.217 22 F -0.217 7.217 23 H 0.389 0.611 24 H 0.070 0.930 25 H 0.070 0.930 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.264 0.736 29 H 0.146 0.854 30 H 0.179 0.821 31 H 0.185 0.815 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 3.277 19.619 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.049 4.049 3 C -0.133 4.133 4 C 0.143 3.857 5 N -0.362 5.362 6 C 0.019 3.981 7 C -0.023 4.023 8 C -0.578 4.578 9 H 0.094 0.906 10 C -0.199 4.199 11 N -0.576 5.576 12 Si 0.795 3.205 13 H -0.187 1.187 14 H -0.215 1.215 15 H -0.187 1.187 16 C -0.210 4.210 17 C -0.044 4.044 18 C -0.151 4.151 19 C -0.092 4.092 20 C 0.242 3.758 21 F -0.199 7.199 22 F -0.199 7.199 23 H 0.222 0.778 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.072 0.928 29 H 0.163 0.837 30 H 0.197 0.803 31 H 0.202 0.798 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.455 3.222 19.290 23.186 hybrid contribution -0.957 -0.221 -1.337 1.659 sum 11.498 3.001 17.952 21.529 Atomic orbital electron populations 1.81181 1.13416 1.12028 1.08036 1.26077 0.93334 0.92336 0.93155 1.15482 0.82928 1.19900 0.95006 1.18079 0.92907 0.90851 0.83904 1.45251 1.08621 1.76279 1.06009 1.21474 0.94691 1.00747 0.81173 1.19159 0.94749 0.95083 0.93298 1.21466 0.94055 1.49537 0.92730 0.90570 1.26037 0.95719 0.94690 1.03491 1.70112 1.08407 1.50645 1.28441 0.85399 0.78112 0.79454 0.77492 1.18711 1.21520 1.18723 1.21138 0.90024 1.08022 1.01786 1.21607 1.02195 0.90729 0.89872 1.21125 0.89974 1.02759 1.01229 1.20373 0.96052 1.01392 0.91346 1.21333 0.85294 0.71001 0.98194 1.92997 1.77189 1.52271 1.97419 1.92998 1.77123 1.54785 1.94970 0.77774 0.91165 0.91170 0.98972 0.98972 0.92777 0.83672 0.80347 0.79807 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.78 18.54 19.00 0.35 -18.43 16 2 C 0.26 9.31 11.96 88.33 1.06 10.37 16 3 C -0.12 -3.47 5.74 -21.15 -0.12 -3.59 16 4 C 0.25 7.11 6.66 38.67 0.26 7.37 16 5 N -0.74 -25.64 5.64 -338.74 -1.91 -27.55 16 6 C 0.14 5.28 4.84 86.38 0.42 5.70 16 7 C 0.01 0.74 5.09 29.85 0.15 0.89 16 8 C -0.54 -28.84 9.11 25.60 0.23 -28.61 16 9 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 10 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 11 N -0.94 -56.45 13.29 21.44 0.28 -56.17 16 12 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 13 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 14 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 16 C -0.19 -3.77 9.29 22.37 0.21 -3.56 16 17 C -0.02 -0.29 10.03 22.30 0.22 -0.07 16 18 C -0.13 -1.42 9.65 22.24 0.21 -1.20 16 19 C -0.09 -1.71 5.40 -19.61 -0.11 -1.82 16 20 C 0.29 5.32 5.02 71.23 0.36 5.68 16 21 F -0.22 -5.43 16.55 44.97 0.74 -4.69 16 22 F -0.22 -5.43 16.54 44.97 0.74 -4.68 16 23 H 0.39 15.02 7.33 -92.71 -0.68 14.34 16 24 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 25 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.15 2.75 6.72 -2.91 -0.02 2.73 16 30 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 31 H 0.18 0.19 7.94 -2.91 -0.02 0.17 16 32 H 0.19 1.02 7.87 -2.39 -0.02 1.01 16 Total: -1.00 -73.18 295.79 6.08 -67.09 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.49 Total: 8.40 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.36 Total: -8.46 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -1.27 Total: -102.15 kcal Atomic # 9 Polarization: -10.86 SS G_CDS: 1.49 Total: -9.37 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.18 6.08 -67.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570343099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.483 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds