Wall clock time and date at job start Mon Mar 30 2020 07:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 C 1.52999 * 109.47121 * 119.99972 * 2 1 3 5 5 H 1.09000 * 109.47298 * 299.99657 * 4 2 1 6 6 C 1.50697 * 109.47374 * 60.00303 * 4 2 1 7 7 O 1.21428 * 120.00178 * 94.99937 * 6 4 2 8 8 C 1.41024 * 119.99496 * 274.99860 * 6 4 2 9 9 H 1.07998 * 120.00473 * 0.02562 * 8 6 4 10 10 C 1.40462 * 119.99711 * 180.02562 * 8 6 4 11 11 N 1.30518 * 120.00406 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00145 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46878 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47316 * 119.99740 * 12 10 8 15 15 H 1.48497 * 109.46960 * 240.00220 * 12 10 8 16 16 C 1.50706 * 109.46945 * 180.02562 * 4 2 1 17 17 C 1.38244 * 119.98773 * 119.99829 * 16 4 2 18 18 C 1.38217 * 120.01084 * 180.02562 * 17 16 4 19 19 C 1.38351 * 119.98541 * 0.25893 * 18 17 16 20 20 Cl 1.73604 * 120.00786 * 179.69323 * 19 18 17 21 21 C 1.38349 * 119.97465 * 359.42086 * 19 18 17 22 22 C 1.38212 * 119.98525 * 0.59771 * 21 19 18 23 23 H 1.09000 * 109.46754 * 300.00037 * 1 2 3 24 24 H 1.08999 * 109.47523 * 60.00268 * 1 2 3 25 25 H 1.09003 * 109.46660 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47495 * 239.99965 * 2 1 3 27 27 H 1.09007 * 109.47260 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47014 * 300.00236 * 3 2 1 29 29 H 1.08994 * 109.47597 * 59.99670 * 3 2 1 30 30 H 0.96997 * 120.00525 * 180.02562 * 11 10 8 31 31 H 1.07999 * 119.99331 * 0.02562 * 17 16 4 32 32 H 1.08002 * 120.00169 * 179.97438 * 18 17 16 33 33 H 1.08008 * 120.00633 * 180.29755 * 21 19 18 34 34 H 1.08001 * 119.99190 * 179.72131 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5377 -2.1421 1.2493 7 8 2.2340 -3.0321 0.8049 8 6 0.2591 -2.4378 1.7655 9 1 -0.3603 -1.6462 2.1603 10 6 -0.2088 -3.7622 1.7660 11 7 0.5394 -4.7190 1.2883 12 14 -1.9028 -4.1541 2.4491 13 1 -2.5458 -2.9032 2.9256 14 1 -2.7371 -4.7652 1.3834 15 1 -1.7718 -5.1053 3.5818 16 6 3.5470 -0.7207 1.2495 17 6 4.2376 -0.1218 2.2867 18 6 5.6197 -0.1206 2.2871 19 6 6.3121 -0.7140 1.2467 20 17 8.0481 -0.7058 1.2427 21 6 5.6205 -1.3190 0.2124 22 6 4.2384 -1.3193 0.2128 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.2162 -5.6335 1.2884 31 1 3.6969 0.3451 3.0967 32 1 6.1591 0.3477 3.0973 33 1 6.1605 -1.7866 -0.5977 34 1 3.6983 -1.7875 -0.5968 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585163888.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:09 Heat of formation + Delta-G solvation = -61.027938 kcal Electronic energy + Delta-G solvation = -18063.209178 eV Core-core repulsion = 15178.328014 eV Total energy + Delta-G solvation = -2884.881163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 5.03 seconds Orbital eigenvalues (eV) -40.87377 -38.87118 -37.36440 -36.33016 -34.68450 -32.07615 -31.84270 -29.72008 -27.58315 -27.26699 -23.79029 -22.92441 -22.04516 -20.19797 -18.40742 -17.98086 -17.22582 -16.41359 -16.16463 -15.60885 -15.28388 -14.97323 -14.85594 -14.32994 -14.23717 -13.77431 -13.46295 -13.28967 -13.21451 -12.83883 -12.79651 -12.57072 -12.37815 -12.32207 -12.19371 -11.98252 -11.74332 -11.59126 -11.44887 -11.30497 -10.90199 -9.91920 -9.52134 -9.23015 -8.18999 -6.96040 0.29302 0.45461 1.18092 1.34431 1.39724 1.55429 2.23135 2.26094 2.78154 3.44756 3.82214 3.99019 4.02630 4.19559 4.27511 4.42125 4.51173 4.54236 4.80149 4.81182 4.87865 4.92714 5.03572 5.11437 5.12753 5.22251 5.28257 5.31582 5.35167 5.41357 5.53212 5.70563 5.86102 5.95077 6.08184 6.81404 6.92182 8.36850 8.60347 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.005629 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.984313 B = 4973.163318 C = 5640.637712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.133 4.133 4 C -0.085 4.085 5 H 0.085 0.915 6 C 0.357 3.643 7 O -0.582 6.582 8 C -0.546 4.546 9 H 0.086 0.914 10 C 0.031 3.969 11 N -0.792 5.792 12 Si 0.979 3.021 13 H -0.244 1.244 14 H -0.269 1.269 15 H -0.270 1.270 16 C -0.055 4.055 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.050 4.050 20 Cl -0.072 7.072 21 C -0.123 4.123 22 C -0.087 4.087 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.277 0.723 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 10.841 0.901 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.190 4.190 4 C -0.104 4.104 5 H 0.104 0.896 6 C 0.253 3.747 7 O -0.474 6.474 8 C -0.578 4.578 9 H 0.104 0.896 10 C -0.188 4.188 11 N -0.421 5.421 12 Si 0.799 3.201 13 H -0.167 1.167 14 H -0.194 1.194 15 H -0.195 1.195 16 C -0.055 4.055 17 C -0.133 4.133 18 C -0.131 4.131 19 C -0.077 4.077 20 Cl -0.043 7.043 21 C -0.142 4.142 22 C -0.105 4.105 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.733 10.288 0.634 11.342 hybrid contribution -0.519 -0.767 0.103 0.932 sum 4.214 9.520 0.737 10.438 Atomic orbital electron populations 1.21902 0.94377 1.02257 1.01645 1.20823 0.96519 0.96197 0.95134 1.21776 1.00454 0.94297 1.02488 1.20785 0.90659 0.99039 0.99917 0.89638 1.20000 0.87801 0.87663 0.79193 1.90377 1.59722 1.49597 1.47669 1.21249 1.03221 0.94225 1.39080 0.89591 1.27097 1.02662 0.95975 0.93072 1.70095 1.37905 1.01545 1.32590 0.85231 0.76746 0.79648 0.78455 1.16723 1.19356 1.19544 1.19965 0.95720 0.95607 0.94232 1.21252 0.93713 1.00008 0.98373 1.21179 0.93870 1.00073 0.97969 1.20895 0.84309 1.04256 0.98203 1.98326 1.09894 1.97603 1.98516 1.21111 0.93838 1.00315 0.98905 1.20906 0.93261 0.97127 0.99205 0.91972 0.91942 0.93260 0.93936 0.93414 0.91573 0.91589 0.91288 0.83511 0.82748 0.84622 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.35 71.98 0.60 -4.34 16 2 C -0.07 -2.43 2.32 -10.80 -0.03 -2.46 16 3 C -0.13 -3.68 8.95 71.98 0.64 -3.03 16 4 C -0.08 -3.48 1.88 -12.29 -0.02 -3.50 16 5 H 0.09 3.26 7.86 -2.39 -0.02 3.24 16 6 C 0.36 19.00 5.58 26.37 0.15 19.15 16 7 O -0.58 -35.97 13.08 -3.49 -0.05 -36.01 16 8 C -0.55 -28.67 7.12 23.50 0.17 -28.50 16 9 H 0.09 4.09 7.52 -2.91 -0.02 4.07 16 10 C 0.03 1.61 5.50 85.43 0.47 2.08 16 11 N -0.79 -45.88 11.72 21.91 0.26 -45.62 16 12 Si 0.98 38.71 29.56 68.60 2.03 40.74 16 13 H -0.24 -8.93 7.11 99.48 0.71 -8.23 16 14 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 15 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 16 C -0.06 -2.15 3.38 -19.86 -0.07 -2.21 16 17 C -0.12 -3.75 9.67 22.27 0.22 -3.53 16 18 C -0.11 -3.29 9.83 22.29 0.22 -3.08 16 19 C -0.05 -1.57 6.32 22.32 0.14 -1.42 16 20 Cl -0.07 -1.91 28.96 -2.72 -0.08 -1.99 16 21 C -0.12 -4.29 9.83 22.29 0.22 -4.07 16 22 C -0.09 -3.50 7.89 22.26 0.18 -3.33 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 2.03 5.91 -2.39 -0.01 2.01 16 26 H 0.04 1.69 7.39 -2.39 -0.02 1.67 16 27 H 0.05 1.35 7.22 -2.38 -0.02 1.34 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.28 14.53 8.29 -92.71 -0.77 13.76 16 31 H 0.15 4.00 7.94 -2.91 -0.02 3.98 16 32 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 33 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 34 H 0.11 4.81 6.89 -2.91 -0.02 4.79 16 Total: -1.00 -65.38 298.97 6.14 -59.24 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.09 Total: 21.91 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.88 Total: -38.26 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.26 Total: -45.62 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.01 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -65.38 6.14 -59.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585163888.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.784 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.03 seconds