Wall clock time and date at job start Mon Mar 30 2020 07:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 7 7 O 1.21429 * 120.00089 * 269.99964 * 6 4 2 8 8 C 1.41034 * 119.99801 * 89.99725 * 6 4 2 9 9 H 1.07999 * 119.99847 * 0.02562 * 8 6 4 10 10 C 1.40461 * 119.99591 * 179.97438 * 8 6 4 11 11 N 1.30517 * 119.99906 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99610 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47196 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47055 * 120.00213 * 12 10 8 15 15 H 1.48496 * 109.47172 * 240.00162 * 12 10 8 16 16 C 1.50701 * 109.47180 * 59.99852 * 4 2 1 17 17 C 1.38242 * 119.98429 * 59.72850 * 16 4 2 18 18 C 1.38220 * 120.00732 * 179.72598 * 17 16 4 19 19 C 1.38355 * 119.98456 * 0.54607 * 18 17 16 20 20 Cl 1.73601 * 120.00905 * 179.70493 * 19 18 17 21 21 C 1.38348 * 119.97619 * 359.72519 * 19 18 17 22 22 C 1.38215 * 119.98803 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 0.97004 * 119.99422 * 180.02562 * 11 10 8 31 31 H 1.07992 * 119.99688 * 359.97438 * 17 16 4 32 32 H 1.07998 * 120.00281 * 180.26976 * 18 17 16 33 33 H 1.08000 * 120.00641 * 179.97438 * 21 19 18 34 34 H 1.07996 * 119.99376 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5470 -0.7219 1.2489 7 8 4.1537 -1.6329 0.7231 8 6 4.2527 0.3357 1.8593 9 1 3.7130 1.1457 2.3273 10 6 5.6573 0.3349 1.8595 11 7 6.3093 -0.6444 1.2943 12 14 6.5919 1.7360 2.6674 13 1 5.6274 2.7142 3.2313 14 1 7.4453 1.1983 3.7573 15 1 7.4461 2.4092 1.6562 16 6 1.5376 -2.1422 1.2492 17 6 1.8671 -2.9914 0.2093 18 6 1.4113 -4.2963 0.2116 19 6 0.6159 -4.7491 1.2492 20 17 0.0367 -6.3856 1.2489 21 6 0.2819 -3.8970 2.2867 22 6 0.7425 -2.5938 2.2859 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 7.2794 -0.6450 1.2948 31 1 2.4840 -2.6365 -0.6028 32 1 1.6724 -4.9610 -0.5986 33 1 -0.3393 -4.2498 3.0967 34 1 0.4822 -1.9287 3.0960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585163890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:21 Heat of formation + Delta-G solvation = -61.689980 kcal Electronic energy + Delta-G solvation = -18056.881100 eV Core-core repulsion = 15171.971228 eV Total energy + Delta-G solvation = -2884.909871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.87284 -38.87137 -37.36654 -36.32691 -34.67846 -32.08691 -31.84518 -29.70284 -27.62490 -27.26013 -23.78926 -22.92064 -22.06577 -20.18539 -18.41391 -17.97998 -17.22532 -16.41429 -16.16198 -15.62139 -15.29104 -14.96687 -14.88084 -14.33027 -14.23416 -13.75712 -13.46343 -13.30565 -13.22899 -12.84778 -12.78404 -12.57577 -12.36680 -12.32017 -12.20051 -11.98476 -11.74524 -11.64441 -11.45617 -11.31247 -10.91072 -9.91990 -9.53891 -9.22257 -8.19069 -6.97184 0.28880 0.45160 1.17997 1.34193 1.39414 1.55190 2.22915 2.25678 2.77931 3.44862 3.81448 3.99356 4.02727 4.18785 4.27125 4.41860 4.50949 4.54144 4.80304 4.80595 4.87251 4.91876 5.02970 5.10602 5.12588 5.21214 5.27584 5.31576 5.34423 5.41346 5.52725 5.67470 5.85835 5.94966 6.07445 6.80933 6.91840 8.36493 8.60024 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.005667 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.146236 B = 4939.523459 C = 5608.758304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.084 4.084 5 H 0.085 0.915 6 C 0.358 3.642 7 O -0.582 6.582 8 C -0.548 4.548 9 H 0.084 0.916 10 C 0.031 3.969 11 N -0.791 5.791 12 Si 0.980 3.020 13 H -0.245 1.245 14 H -0.270 1.270 15 H -0.268 1.268 16 C -0.056 4.056 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.050 4.050 20 Cl -0.072 7.072 21 C -0.112 4.112 22 C -0.115 4.115 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.277 0.723 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 -0.486 1.183 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.199 4.199 4 C -0.104 4.104 5 H 0.103 0.897 6 C 0.255 3.745 7 O -0.474 6.474 8 C -0.579 4.579 9 H 0.102 0.898 10 C -0.188 4.188 11 N -0.421 5.421 12 Si 0.800 3.200 13 H -0.168 1.168 14 H -0.195 1.195 15 H -0.193 1.193 16 C -0.056 4.056 17 C -0.107 4.107 18 C -0.142 4.142 19 C -0.077 4.077 20 Cl -0.043 7.043 21 C -0.131 4.131 22 C -0.133 4.133 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.307 -1.173 0.867 11.401 hybrid contribution 0.904 0.221 0.135 0.941 sum -10.403 -0.952 1.002 10.494 Atomic orbital electron populations 1.21773 0.93204 1.01511 1.02507 1.20835 0.96602 0.96110 0.95186 1.21842 1.01290 0.95033 1.01762 1.20778 0.97812 0.91904 0.99879 0.89651 1.19980 0.88214 0.86269 0.80049 1.90371 1.71089 1.39268 1.46645 1.21249 0.92342 1.08949 1.35370 0.89758 1.27096 0.99462 0.98502 0.93739 1.70098 1.09035 1.30632 1.32330 0.85225 0.78374 0.78031 0.78413 1.16761 1.19514 1.19322 1.19967 0.95247 0.96146 0.94262 1.20942 0.97235 0.93220 0.99254 1.21118 0.98217 0.95977 0.98849 1.20902 1.01951 0.86605 0.98206 1.98327 1.87704 1.19783 1.98517 1.21181 1.01093 0.92782 0.98011 1.21254 0.97713 0.95934 0.98385 0.91564 0.91553 0.93382 0.93935 0.91873 0.93771 0.91837 0.91274 0.87446 0.84628 0.82722 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.95 71.98 0.64 -3.03 16 2 C -0.07 -2.46 2.31 -10.79 -0.02 -2.49 16 3 C -0.14 -4.88 8.62 71.98 0.62 -4.26 16 4 C -0.08 -3.47 1.89 -12.28 -0.02 -3.50 16 5 H 0.09 3.26 7.83 -2.39 -0.02 3.24 16 6 C 0.36 19.11 5.37 26.37 0.14 19.25 16 7 O -0.58 -35.97 13.10 -3.49 -0.05 -36.02 16 8 C -0.55 -28.88 7.39 23.50 0.17 -28.70 16 9 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 10 C 0.03 1.62 5.50 85.43 0.47 2.09 16 11 N -0.79 -45.92 11.72 21.91 0.26 -45.66 16 12 Si 0.98 38.81 29.56 68.60 2.03 40.84 16 13 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16 14 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 15 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 16 C -0.06 -2.18 3.42 -19.86 -0.07 -2.25 16 17 C -0.09 -3.57 7.94 22.27 0.18 -3.39 16 18 C -0.12 -4.28 9.83 22.29 0.22 -4.07 16 19 C -0.05 -1.56 6.32 22.32 0.14 -1.42 16 20 Cl -0.07 -1.90 28.96 -2.72 -0.08 -1.98 16 21 C -0.11 -3.27 9.83 22.29 0.22 -3.05 16 22 C -0.11 -3.71 9.67 22.27 0.22 -3.50 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.36 7.22 -2.38 -0.02 1.35 16 26 H 0.04 1.70 7.37 -2.39 -0.02 1.68 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.83 6.17 -2.39 -0.01 1.81 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.28 14.55 8.29 -92.70 -0.77 13.78 16 31 H 0.11 4.88 6.77 -2.91 -0.02 4.86 16 32 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.15 3.99 7.94 -2.91 -0.02 3.97 16 Total: -1.00 -65.54 299.83 6.16 -59.38 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.09 Total: 21.77 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 2.91 Total: -38.32 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.26 Total: -45.66 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.02 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -65.54 6.16 -59.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585163890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.314 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds