Wall clock time and date at job start Mon Mar 30 2020 07:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76195 * 103.00138 * 2 1 4 4 C 1.38952 * 119.67735 * 179.97438 * 3 2 1 5 5 C 1.39025 * 119.00893 * 180.27375 * 4 3 2 6 6 N 1.39569 * 120.81522 * 179.70477 * 5 4 3 7 7 C 1.34774 * 120.00127 * 212.44360 * 6 5 4 8 8 O 1.21274 * 119.99924 * 5.26611 * 7 6 5 9 9 C 1.50708 * 120.00037 * 185.26227 * 7 6 5 10 10 C 1.53001 * 109.46862 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46675 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00234 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99770 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00114 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00046 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47320 * 59.99830 * 15 13 11 17 17 H 1.48503 * 109.47385 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47049 * 299.99752 * 15 13 11 19 19 C 1.39637 * 118.36534 * 359.44964 * 5 4 3 20 20 C 1.37786 * 119.25754 * 0.59562 * 19 5 4 21 21 N 1.32051 * 120.93244 * 359.66115 * 20 19 5 22 22 H 1.09003 * 109.46973 * 60.00332 * 1 2 3 23 23 H 1.09003 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47107 * 299.99903 * 1 2 3 25 25 H 1.07999 * 120.49246 * 0.02562 * 4 3 2 26 26 H 0.97009 * 119.99841 * 32.44409 * 6 5 4 27 27 H 1.09005 * 109.46750 * 300.00052 * 9 7 6 28 28 H 1.08997 * 109.46675 * 60.00029 * 9 7 6 29 29 H 1.08998 * 109.46817 * 299.99996 * 10 9 7 30 30 H 1.08996 * 109.47364 * 59.99963 * 10 9 7 31 31 H 0.96995 * 120.00513 * 180.02562 * 14 13 11 32 32 H 1.08005 * 120.36969 * 180.30828 * 19 5 4 33 33 H 1.07998 * 119.53422 * 179.68608 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5415 2.1155 0.0005 5 6 3.8384 3.4737 0.0063 6 7 5.1621 3.9161 0.0133 7 6 5.4864 5.0618 0.6446 8 8 4.6484 5.6584 1.2868 9 6 6.8906 5.6014 0.5526 10 6 6.9907 6.9014 1.3532 11 6 8.3946 7.4414 1.2606 12 1 9.1406 6.9107 0.6878 13 6 8.7264 8.6135 1.9065 14 7 7.8175 9.2606 2.6028 15 14 10.4663 9.2832 1.7912 16 1 10.8010 9.5500 0.3692 17 1 10.5633 10.5456 2.5673 18 1 11.4179 8.2868 2.3451 19 6 2.7798 4.3842 -0.0004 20 6 1.4854 3.9120 0.0000 21 7 1.2359 2.6153 0.0000 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 4.3335 1.3813 0.0005 26 1 5.8487 3.3989 -0.4364 27 1 7.5884 4.8697 0.9598 28 1 7.1369 5.7970 -0.4910 29 1 6.2928 7.6332 0.9464 30 1 6.7444 6.7055 2.3967 31 1 8.0507 10.0854 3.0568 32 1 2.9735 5.4468 -0.0012 33 1 0.6632 4.6124 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589709063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:03 Heat of formation + Delta-G solvation = -13.897585 kcal Electronic energy + Delta-G solvation = -16813.334076 eV Core-core repulsion = 13964.833096 eV Total energy + Delta-G solvation = -2848.500980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67709 -38.99219 -35.19597 -33.60156 -31.59323 -31.35705 -30.44982 -29.01749 -26.03094 -24.02194 -23.43108 -21.68334 -20.00659 -18.49341 -17.32653 -16.34470 -16.28827 -15.82677 -15.66405 -14.93668 -14.62848 -14.44165 -14.39145 -13.88924 -13.50386 -13.47489 -12.86729 -12.60999 -12.25329 -12.06624 -11.29983 -11.03124 -10.93725 -10.70951 -10.67851 -10.08892 -10.05947 -9.89429 -9.73820 -9.30701 -9.16506 -8.64011 -8.39087 -7.74210 -6.03241 -4.08455 0.95366 1.09497 1.28300 2.06798 2.89971 3.10417 3.30258 3.35534 3.36960 3.68998 4.41334 4.46856 4.85691 4.93776 4.97437 4.99091 5.09356 5.31946 5.41025 5.43969 5.56577 5.65874 5.98171 6.03450 6.11113 6.24412 6.70748 6.72271 7.44857 7.64511 7.68887 7.73002 7.96790 8.24749 8.40720 8.98940 9.55717 11.07607 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.060902 B = 0.003100 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.646767 B = 9029.359176 C = 9336.460086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.086 6.086 3 C 0.136 3.864 4 C -0.187 4.187 5 C 0.221 3.779 6 N -0.682 5.682 7 C 0.510 3.490 8 O -0.506 6.506 9 C -0.128 4.128 10 C 0.037 3.963 11 C -0.531 4.531 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.181 4.181 20 C 0.130 3.870 21 N -0.510 5.510 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.140 0.860 26 H 0.413 0.587 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.151 0.849 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 -17.290 -7.749 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.152 5.848 3 C -0.113 4.113 4 C -0.217 4.217 5 C 0.115 3.885 6 N -0.328 5.328 7 C 0.300 3.700 8 O -0.378 6.378 9 C -0.168 4.168 10 C -0.001 4.001 11 C -0.569 4.569 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.206 4.206 20 C -0.028 4.028 21 N -0.225 5.225 22 H 0.105 0.895 23 H 0.119 0.881 24 H 0.106 0.894 25 H 0.158 0.842 26 H 0.250 0.750 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.076 -17.924 -7.149 22.764 hybrid contribution 1.349 1.582 -0.209 2.090 sum -10.727 -16.341 -7.358 20.886 Atomic orbital electron populations 1.23417 0.93610 1.05838 1.06775 1.85434 1.07962 0.99399 1.92027 1.22624 0.91341 0.98145 0.99146 1.21286 0.96481 0.94772 1.09135 1.17918 0.85612 0.91929 0.93056 1.43994 1.06947 1.26335 1.55557 1.21986 0.92785 0.78473 0.76707 1.90700 1.51572 1.57087 1.38412 1.21949 0.89050 1.02029 1.03787 1.18926 0.97055 0.88855 0.95257 1.21140 0.95761 1.07986 1.32000 0.92543 1.25022 0.97280 0.96821 0.95185 1.69975 1.33468 1.17003 1.32282 0.86628 0.84713 0.78320 0.78134 1.20202 1.21238 1.20195 1.22196 0.92391 1.02048 1.03962 1.22541 0.95762 0.91136 0.93389 1.67984 1.34631 1.02770 1.17079 0.89486 0.88092 0.89444 0.84234 0.75028 0.89628 0.89494 0.95677 0.95680 0.92778 0.83169 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.02 101.05 1.01 -0.01 16 2 S -0.09 -0.89 22.55 -107.50 -2.42 -3.32 16 3 C 0.14 1.75 6.99 -16.98 -0.12 1.63 16 4 C -0.19 -2.35 9.78 -39.03 -0.38 -2.73 16 5 C 0.22 3.10 6.32 -83.52 -0.53 2.58 16 6 N -0.68 -9.22 5.35 -9.73 -0.05 -9.27 16 7 C 0.51 9.10 7.60 -10.98 -0.08 9.02 16 8 O -0.51 -11.02 13.69 5.56 0.08 -10.94 16 9 C -0.13 -2.40 5.64 -27.88 -0.16 -2.55 16 10 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 11 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.18 -2.64 8.73 -39.22 -0.34 -2.99 16 20 C 0.13 1.69 11.16 -17.62 -0.20 1.49 16 21 N -0.51 -6.81 9.42 -12.19 -0.11 -6.92 16 22 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 23 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.41 4.05 8.82 -40.82 -0.36 3.69 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.15 2.40 6.48 -52.48 -0.34 2.06 16 33 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -33.10 304.60 -7.58 -40.67 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.04 Total: 1.12 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.33 Total: -6.03 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.57 Total: -42.29 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.42 Total: -3.32 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.10 -7.58 -40.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589709063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.774 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds