Wall clock time and date at job start Mon Mar 30 2020 07:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76195 * 103.00138 * 2 1 4 4 C 1.38952 * 119.67735 * 179.97438 * 3 2 1 5 5 C 1.39025 * 119.00893 * 180.27375 * 4 3 2 6 6 N 1.39569 * 120.81522 * 179.70477 * 5 4 3 7 7 C 1.34774 * 120.00127 * 212.44360 * 6 5 4 8 8 O 1.21274 * 119.99924 * 5.26611 * 7 6 5 9 9 C 1.50708 * 120.00037 * 185.26227 * 7 6 5 10 10 C 1.53001 * 109.46862 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46675 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00234 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99770 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00114 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00046 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47320 * 59.99830 * 15 13 11 17 17 H 1.48503 * 109.47385 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47049 * 299.99752 * 15 13 11 19 19 C 1.39637 * 118.36534 * 359.44964 * 5 4 3 20 20 C 1.37786 * 119.25754 * 0.59562 * 19 5 4 21 21 N 1.32051 * 120.93244 * 359.66115 * 20 19 5 22 22 H 1.09003 * 109.46973 * 60.00332 * 1 2 3 23 23 H 1.09003 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47107 * 299.99903 * 1 2 3 25 25 H 1.07999 * 120.49246 * 0.02562 * 4 3 2 26 26 H 0.97009 * 119.99841 * 32.44409 * 6 5 4 27 27 H 1.09005 * 109.46750 * 300.00052 * 9 7 6 28 28 H 1.08997 * 109.46675 * 60.00029 * 9 7 6 29 29 H 1.08998 * 109.46817 * 299.99996 * 10 9 7 30 30 H 1.08996 * 109.47364 * 59.99963 * 10 9 7 31 31 H 0.96995 * 120.00513 * 180.02562 * 14 13 11 32 32 H 1.08005 * 120.36969 * 180.30828 * 19 5 4 33 33 H 1.07998 * 119.53422 * 179.68608 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5415 2.1155 0.0005 5 6 3.8384 3.4737 0.0063 6 7 5.1621 3.9161 0.0133 7 6 5.4864 5.0618 0.6446 8 8 4.6484 5.6584 1.2868 9 6 6.8906 5.6014 0.5526 10 6 6.9907 6.9014 1.3532 11 6 8.3946 7.4414 1.2606 12 1 9.1406 6.9107 0.6878 13 6 8.7264 8.6135 1.9065 14 7 7.8175 9.2606 2.6028 15 14 10.4663 9.2832 1.7912 16 1 10.8010 9.5500 0.3692 17 1 10.5633 10.5456 2.5673 18 1 11.4179 8.2868 2.3451 19 6 2.7798 4.3842 -0.0004 20 6 1.4854 3.9120 0.0000 21 7 1.2359 2.6153 0.0000 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 4.3335 1.3813 0.0005 26 1 5.8487 3.3989 -0.4364 27 1 7.5884 4.8697 0.9598 28 1 7.1369 5.7970 -0.4910 29 1 6.2928 7.6332 0.9464 30 1 6.7444 6.7055 2.3967 31 1 8.0507 10.0854 3.0568 32 1 2.9735 5.4468 -0.0012 33 1 0.6632 4.6124 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589709063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:03 Heat of formation + Delta-G solvation = -36.143821 kcal Electronic energy + Delta-G solvation = -16814.298745 eV Core-core repulsion = 13964.833096 eV Total energy + Delta-G solvation = -2849.465649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86051 -40.24780 -36.47422 -35.59107 -33.27984 -32.36973 -31.82291 -29.69268 -27.88124 -25.24820 -24.64114 -23.28323 -21.46195 -19.56992 -18.96271 -17.92588 -17.30482 -17.11744 -16.88876 -16.45452 -16.26064 -15.55952 -15.38801 -14.98649 -14.81386 -14.36913 -14.21231 -14.13653 -13.57166 -13.29806 -13.05790 -12.79394 -12.53442 -12.16292 -11.93464 -11.68024 -11.52316 -11.36889 -11.19458 -10.87885 -10.57254 -10.56013 -9.78071 -8.58874 -8.18627 -6.32385 -0.08173 0.02127 0.42818 1.31355 1.42971 1.46729 1.53312 1.54411 1.90875 2.43229 2.64305 3.15015 3.53303 3.69348 3.94271 4.02543 4.17693 4.35607 4.39707 4.44168 4.48253 4.51526 4.62199 4.95722 4.96502 5.03622 5.17180 5.49068 5.60516 5.61336 5.84147 6.15810 6.30551 6.67194 6.85358 7.05979 7.38063 8.93694 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.060902 B = 0.003100 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.646767 B = 9029.359176 C = 9336.460086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.075 6.075 3 C 0.121 3.879 4 C -0.182 4.182 5 C 0.205 3.795 6 N -0.659 5.659 7 C 0.516 3.484 8 O -0.555 6.555 9 C -0.116 4.116 10 C 0.041 3.959 11 C -0.543 4.543 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.262 1.262 17 H -0.290 1.290 18 H -0.262 1.262 19 C -0.201 4.201 20 C 0.130 3.870 21 N -0.515 5.515 22 H 0.086 0.914 23 H 0.128 0.872 24 H 0.082 0.918 25 H 0.165 0.835 26 H 0.434 0.566 27 H 0.113 0.887 28 H 0.114 0.886 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.263 0.737 32 H 0.130 0.870 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -19.564 -9.015 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.163 5.837 3 C -0.127 4.127 4 C -0.211 4.211 5 C 0.099 3.901 6 N -0.306 5.306 7 C 0.306 3.694 8 O -0.431 6.431 9 C -0.155 4.155 10 C 0.003 3.997 11 C -0.581 4.581 12 H 0.096 0.904 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.187 1.187 17 H -0.215 1.215 18 H -0.187 1.187 19 C -0.227 4.227 20 C -0.028 4.028 21 N -0.231 5.231 22 H 0.105 0.895 23 H 0.147 0.853 24 H 0.101 0.899 25 H 0.183 0.817 26 H 0.274 0.726 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.078 -20.270 -8.462 24.600 hybrid contribution 0.915 2.174 0.171 2.365 sum -10.163 -18.096 -8.291 22.349 Atomic orbital electron populations 1.23531 0.91732 1.07576 1.06513 1.85401 1.09999 0.96898 1.91394 1.23153 0.91595 0.99606 0.98367 1.21505 0.97238 0.94327 1.08008 1.18049 0.85284 0.92695 0.94047 1.43543 1.07618 1.24973 1.54500 1.21719 0.91962 0.79207 0.76481 1.90696 1.52639 1.58894 1.40875 1.21696 0.90444 0.99200 1.04193 1.18711 0.95654 0.91559 0.93792 1.21679 0.96735 1.08141 1.31576 0.90398 1.26111 1.02124 0.97400 0.94744 1.70157 1.36217 1.17630 1.33729 0.85401 0.78849 0.77455 0.78718 1.18692 1.21542 1.18708 1.22169 0.93640 1.01292 1.05562 1.22867 0.95821 0.91633 0.92498 1.68074 1.34928 1.02794 1.17269 0.89509 0.85331 0.89907 0.81743 0.72610 0.86878 0.86788 0.99575 0.99750 0.92871 0.85253 0.79960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 10.02 113.37 1.14 -0.56 16 2 S -0.08 -1.38 22.55 -56.49 -1.27 -2.65 16 3 C 0.12 2.92 6.99 84.76 0.59 3.51 16 4 C -0.18 -4.24 9.78 22.63 0.22 -4.02 16 5 C 0.20 5.61 6.32 38.44 0.24 5.85 16 6 N -0.66 -17.02 5.35 -303.09 -1.62 -18.64 16 7 C 0.52 18.48 7.60 87.66 0.67 19.14 16 8 O -0.56 -25.34 13.69 -3.01 -0.04 -25.39 16 9 C -0.12 -4.24 5.64 29.85 0.17 -4.07 16 10 C 0.04 2.15 4.26 29.85 0.13 2.28 16 11 C -0.54 -29.84 9.11 25.60 0.23 -29.60 16 12 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 13 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 14 N -0.94 -58.45 13.29 21.45 0.28 -58.17 16 15 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 C -0.20 -6.00 8.73 22.50 0.20 -5.80 16 20 C 0.13 3.35 11.16 84.55 0.94 4.30 16 21 N -0.52 -13.20 9.42 -192.48 -1.81 -15.01 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 26 H 0.43 7.37 8.82 -92.70 -0.82 6.55 16 27 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 28 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 29 H -0.01 -0.85 8.10 -2.39 -0.02 -0.87 16 30 H -0.02 -0.96 8.10 -2.39 -0.02 -0.98 16 31 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.13 4.40 6.48 -2.91 -0.02 4.38 16 33 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -74.54 304.60 2.86 -71.68 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.31 Total: 11.66 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.99 Total: -8.85 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -3.15 Total: -91.82 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -1.27 Total: -2.65 kcal Total: -74.54 2.86 -71.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589709063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.535 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds