Wall clock time and date at job start Mon Mar 30 2020 07:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76209 * 102.99692 * 2 1 4 4 C 1.39032 * 120.51785 * 0.04535 * 3 2 1 5 5 C 1.38729 * 118.42200 * 179.97438 * 4 3 2 6 6 C 1.38113 * 119.37578 * 359.97438 * 5 4 3 7 7 N 1.31985 * 121.00691 * 359.97438 * 6 5 4 8 8 C 1.32224 * 121.71912 * 0.02562 * 7 6 5 9 9 N 1.39585 * 119.74812 * 179.72425 * 8 7 6 10 10 C 1.34776 * 119.99550 * 0.02562 * 9 8 7 11 11 O 1.21282 * 120.00173 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99752 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46856 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47189 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99735 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00463 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00382 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99891 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47084 * 89.99665 * 18 16 14 20 20 H 1.48497 * 109.47101 * 210.00243 * 18 16 14 21 21 H 1.48496 * 109.47144 * 330.00070 * 18 16 14 22 22 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46844 * 299.99977 * 1 2 3 24 24 H 1.09000 * 109.47018 * 60.00097 * 1 2 3 25 25 H 1.07999 * 120.79601 * 359.95025 * 4 3 2 26 26 H 1.07993 * 120.31487 * 179.97438 * 5 4 3 27 27 H 1.08006 * 119.49713 * 179.97438 * 6 5 4 28 28 H 0.96997 * 120.00190 * 179.97438 * 9 8 7 29 29 H 1.08989 * 109.46995 * 299.99942 * 12 10 9 30 30 H 1.09003 * 109.46738 * 60.00164 * 12 10 9 31 31 H 1.08995 * 109.47912 * 300.00366 * 13 12 10 32 32 H 1.09009 * 109.47199 * 60.00387 * 13 12 10 33 33 H 0.97005 * 120.00377 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.2021 2.6742 0.0009 5 6 1.5633 4.0137 0.0015 6 6 2.9017 4.3544 0.0015 7 7 3.8397 3.4259 0.0017 8 6 3.5425 2.1375 0.0012 9 7 4.5676 1.1902 -0.0045 10 6 5.8547 1.5902 -0.0090 11 8 6.1220 2.7732 -0.0085 12 6 6.9615 0.5675 -0.0145 13 6 8.3150 1.2809 -0.0195 14 6 9.4219 0.2583 -0.0244 15 1 9.1838 -0.7952 -0.0244 16 6 10.7385 0.6674 -0.0289 17 7 11.7044 -0.2250 -0.0337 18 14 11.1504 2.4895 -0.0281 19 1 11.2647 2.9705 1.3722 20 1 12.4394 2.7058 -0.7328 21 1 10.0742 3.2405 -0.7230 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.1623 2.3822 0.0009 26 1 0.8051 4.7827 0.0018 27 1 3.1852 5.3966 0.0015 28 1 4.3538 0.2441 -0.0045 29 1 6.8831 -0.0575 0.8749 30 1 6.8762 -0.0553 -0.9050 31 1 8.3932 1.9057 -0.9091 32 1 8.4005 1.9040 0.8708 33 1 12.6308 0.0628 -0.0364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593843099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:08 Heat of formation + Delta-G solvation = 6.665687 kcal Electronic energy + Delta-G solvation = -17147.260937 eV Core-core repulsion = 14299.651648 eV Total energy + Delta-G solvation = -2847.609290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69040 -38.82241 -34.83952 -33.49987 -32.80554 -31.39945 -30.10644 -29.35878 -26.29470 -24.15714 -23.39921 -21.20756 -19.78125 -18.33971 -17.47617 -17.28942 -16.37503 -15.62724 -15.46091 -15.31119 -14.43060 -14.36124 -14.06840 -13.88828 -13.83450 -13.30328 -12.91801 -12.64176 -12.60107 -12.53546 -11.43011 -10.99270 -10.73327 -10.67250 -10.60814 -10.17928 -10.07731 -9.91518 -9.70574 -9.18165 -8.89078 -8.86630 -8.49296 -7.54524 -6.01527 -4.00537 0.83238 1.10750 1.12917 2.01559 2.98621 3.03108 3.40193 3.46637 3.58071 3.77495 4.35182 4.52792 4.56030 4.63537 4.64097 4.80253 4.87806 5.21168 5.25404 5.33967 5.37129 5.58489 5.84975 6.03732 6.05973 6.17600 6.61761 6.66191 7.29668 7.35782 7.42816 7.79033 8.02718 8.49375 8.58333 9.01152 9.61316 11.11170 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.004264 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.837631 B = 6564.530264 C = 7422.613913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.111 6.111 3 C -0.186 4.186 4 C -0.062 4.062 5 C -0.198 4.198 6 C 0.131 3.869 7 N -0.461 5.461 8 C 0.396 3.604 9 N -0.663 5.663 10 C 0.498 3.502 11 O -0.468 6.468 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.525 4.525 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.260 1.260 22 H 0.110 0.890 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.161 0.839 28 H 0.416 0.584 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.770 3.004 0.047 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.128 5.872 3 C -0.305 4.305 4 C -0.093 4.093 5 C -0.221 4.221 6 C -0.029 4.029 7 N -0.176 5.176 8 C 0.159 3.841 9 N -0.311 5.311 10 C 0.286 3.714 11 O -0.336 6.336 12 C -0.160 4.160 13 C -0.037 4.037 14 C -0.563 4.563 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 H 0.129 0.871 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.254 0.746 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.672 3.008 0.042 24.855 hybrid contribution -1.636 1.263 0.032 2.067 sum -26.309 4.271 0.074 26.653 Atomic orbital electron populations 1.23668 0.94334 1.07324 1.05620 1.85324 1.07062 1.01711 1.93129 1.22163 0.95538 0.98402 1.14350 1.21307 0.98126 0.92667 0.97241 1.21913 0.97956 0.96169 1.06057 1.22783 0.88249 0.98909 0.92959 1.67822 1.36434 0.98781 1.14572 1.18203 0.84750 0.88247 0.92934 1.44245 1.05385 1.08888 1.72575 1.21958 0.82454 0.91751 0.75210 1.90760 1.82107 1.18049 1.42645 1.21736 0.93548 0.96935 1.03774 1.19394 0.90172 0.96246 0.97849 1.21084 0.89661 0.94105 1.51461 0.90837 1.24957 0.96317 0.97601 0.94282 1.69908 0.99661 1.33616 1.50999 0.86803 0.77904 0.86148 0.78772 1.20214 1.21432 1.18476 0.87132 0.89696 0.89690 0.84716 0.84565 0.82182 0.74603 0.89179 0.89155 0.95652 0.96109 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.17 101.05 0.93 0.16 16 2 S -0.11 -1.07 21.10 -107.50 -2.27 -3.33 16 3 C -0.19 -2.25 6.15 -38.74 -0.24 -2.49 16 4 C -0.06 -0.60 9.46 -39.11 -0.37 -0.97 16 5 C -0.20 -1.90 10.10 -39.45 -0.40 -2.30 16 6 C 0.13 1.65 11.17 -17.53 -0.20 1.45 16 7 N -0.46 -7.85 7.87 -12.16 -0.10 -7.95 16 8 C 0.40 6.20 7.45 -154.39 -1.15 5.05 16 9 N -0.66 -10.50 5.34 -11.24 -0.06 -10.56 16 10 C 0.50 9.71 7.79 -10.98 -0.09 9.63 16 11 O -0.47 -10.88 14.24 5.56 0.08 -10.80 16 12 C -0.12 -2.37 5.64 -27.88 -0.16 -2.53 16 13 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 14 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 18 Si 0.88 22.80 27.47 -169.99 -4.67 18.13 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 21 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 22 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.08 0.39 7.78 -51.92 -0.40 -0.01 16 24 H 0.08 0.39 7.78 -51.92 -0.40 -0.01 16 25 H 0.14 0.88 6.04 -52.49 -0.32 0.56 16 26 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.42 5.39 7.23 -40.82 -0.30 5.10 16 29 H 0.09 1.63 8.14 -51.94 -0.42 1.20 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 32 H 0.02 0.54 7.53 -51.92 -0.39 0.15 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 296.48 15.07 4.47 4.47 Total: -1.00 -35.86 296.48 -7.85 -43.71 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.88 Total: -0.77 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.19 Total: -5.52 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.62 Total: -45.88 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.13 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.27 Total: -3.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.86 -7.85 -43.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593843099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds