Wall clock time and date at job start Mon Mar 30 2020 07:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76209 * 102.99692 * 2 1 4 4 C 1.39032 * 120.51785 * 0.04535 * 3 2 1 5 5 C 1.38729 * 118.42200 * 179.97438 * 4 3 2 6 6 C 1.38113 * 119.37578 * 359.97438 * 5 4 3 7 7 N 1.31985 * 121.00691 * 359.97438 * 6 5 4 8 8 C 1.32224 * 121.71912 * 0.02562 * 7 6 5 9 9 N 1.39585 * 119.74812 * 179.72425 * 8 7 6 10 10 C 1.34776 * 119.99550 * 0.02562 * 9 8 7 11 11 O 1.21282 * 120.00173 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99752 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46856 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47189 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99735 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00463 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00382 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99891 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47084 * 89.99665 * 18 16 14 20 20 H 1.48497 * 109.47101 * 210.00243 * 18 16 14 21 21 H 1.48496 * 109.47144 * 330.00070 * 18 16 14 22 22 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46844 * 299.99977 * 1 2 3 24 24 H 1.09000 * 109.47018 * 60.00097 * 1 2 3 25 25 H 1.07999 * 120.79601 * 359.95025 * 4 3 2 26 26 H 1.07993 * 120.31487 * 179.97438 * 5 4 3 27 27 H 1.08006 * 119.49713 * 179.97438 * 6 5 4 28 28 H 0.96997 * 120.00190 * 179.97438 * 9 8 7 29 29 H 1.08989 * 109.46995 * 299.99942 * 12 10 9 30 30 H 1.09003 * 109.46738 * 60.00164 * 12 10 9 31 31 H 1.08995 * 109.47912 * 300.00366 * 13 12 10 32 32 H 1.09009 * 109.47199 * 60.00387 * 13 12 10 33 33 H 0.97005 * 120.00377 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.2021 2.6742 0.0009 5 6 1.5633 4.0137 0.0015 6 6 2.9017 4.3544 0.0015 7 7 3.8397 3.4259 0.0017 8 6 3.5425 2.1375 0.0012 9 7 4.5676 1.1902 -0.0045 10 6 5.8547 1.5902 -0.0090 11 8 6.1220 2.7732 -0.0085 12 6 6.9615 0.5675 -0.0145 13 6 8.3150 1.2809 -0.0195 14 6 9.4219 0.2583 -0.0244 15 1 9.1838 -0.7952 -0.0244 16 6 10.7385 0.6674 -0.0289 17 7 11.7044 -0.2250 -0.0337 18 14 11.1504 2.4895 -0.0281 19 1 11.2647 2.9705 1.3722 20 1 12.4394 2.7058 -0.7328 21 1 10.0742 3.2405 -0.7230 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.1623 2.3822 0.0009 26 1 0.8051 4.7827 0.0018 27 1 3.1852 5.3966 0.0015 28 1 4.3538 0.2441 -0.0045 29 1 6.8831 -0.0575 0.8749 30 1 6.8762 -0.0553 -0.9050 31 1 8.3932 1.9057 -0.9091 32 1 8.4005 1.9040 0.8708 33 1 12.6308 0.0628 -0.0364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593843099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:07 Heat of formation + Delta-G solvation = -17.593613 kcal Electronic energy + Delta-G solvation = -17148.312900 eV Core-core repulsion = 14299.651648 eV Total energy + Delta-G solvation = -2848.661252 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.80017 -40.11113 -36.12210 -35.54640 -33.74115 -33.34457 -31.21781 -29.83120 -28.13715 -25.14849 -24.59649 -22.88258 -21.26601 -19.49424 -19.07227 -18.34585 -17.90800 -16.85555 -16.66429 -16.39102 -16.10814 -15.48253 -15.34036 -14.94613 -14.67059 -14.47946 -14.45080 -14.15872 -13.49245 -13.40324 -13.33787 -12.93606 -12.15043 -11.99916 -11.91596 -11.79481 -11.48447 -11.42963 -11.33939 -11.19110 -10.78623 -10.11052 -9.83330 -8.35798 -8.32050 -6.35074 -0.08913 0.22996 0.42686 1.32919 1.34668 1.38847 1.50282 1.63805 1.83510 2.34660 2.79508 3.03542 3.39888 3.67148 3.93688 4.02197 4.13295 4.30581 4.32190 4.34787 4.42747 4.49479 4.76945 4.89137 4.93129 5.05104 5.19312 5.32372 5.40305 5.58650 5.66247 6.10608 6.23341 6.70574 6.93156 7.26833 7.30314 8.83522 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.004264 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.837631 B = 6564.530264 C = 7422.613913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.140 6.140 3 C -0.180 4.180 4 C -0.062 4.062 5 C -0.172 4.172 6 C 0.104 3.896 7 N -0.513 5.513 8 C 0.353 3.647 9 N -0.653 5.653 10 C 0.505 3.495 11 O -0.516 6.516 12 C -0.113 4.113 13 C 0.006 3.994 14 C -0.529 4.529 15 H 0.053 0.947 16 C 0.016 3.984 17 N -0.942 5.942 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.263 1.263 22 H 0.128 0.872 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.175 0.825 26 H 0.179 0.821 27 H 0.175 0.825 28 H 0.427 0.573 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.265 3.642 0.093 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.099 5.901 3 C -0.298 4.298 4 C -0.093 4.093 5 C -0.194 4.194 6 C -0.056 4.056 7 N -0.228 5.228 8 C 0.116 3.884 9 N -0.302 5.302 10 C 0.293 3.707 11 O -0.387 6.387 12 C -0.153 4.153 13 C -0.032 4.032 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.582 5.582 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.188 1.188 22 H 0.146 0.854 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.193 0.807 26 H 0.196 0.804 27 H 0.192 0.808 28 H 0.267 0.733 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.232 3.617 0.089 28.463 hybrid contribution -0.771 0.998 0.017 1.262 sum -29.003 4.615 0.106 29.368 Atomic orbital electron populations 1.23840 0.90060 1.08986 1.07045 1.85482 1.11682 1.00173 1.92770 1.22341 0.94539 1.00260 1.12630 1.21858 0.99432 0.92197 0.95830 1.22358 0.97418 0.97345 1.02326 1.23189 0.89321 0.98995 0.94056 1.67635 1.39202 1.00140 1.15813 1.18374 0.85791 0.88003 0.96201 1.43828 1.04445 1.09801 1.72088 1.21646 0.83617 0.90690 0.74733 1.90733 1.83094 1.19528 1.45389 1.21553 0.91314 0.96902 1.05537 1.19220 0.92100 0.95318 0.96517 1.21387 0.90850 0.94004 1.50475 0.92915 1.25763 0.96435 1.01780 0.94211 1.70014 1.00218 1.35617 1.52394 0.85848 0.77834 0.81006 0.79145 1.19366 1.20189 1.18774 0.85367 0.88213 0.88213 0.80750 0.80385 0.80819 0.73254 0.87412 0.87440 0.97067 0.97195 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 9.17 113.37 1.04 0.17 16 2 S -0.14 -2.38 21.10 -56.49 -1.19 -3.57 16 3 C -0.18 -4.01 6.15 22.81 0.14 -3.87 16 4 C -0.06 -0.96 9.46 22.58 0.21 -0.75 16 5 C -0.17 -2.71 10.10 22.36 0.23 -2.49 16 6 C 0.10 2.50 11.17 84.64 0.95 3.45 16 7 N -0.51 -17.67 7.87 -192.39 -1.51 -19.18 16 8 C 0.35 10.98 7.45 133.05 0.99 11.97 16 9 N -0.65 -20.88 5.34 -307.87 -1.65 -22.52 16 10 C 0.51 20.12 7.79 87.66 0.68 20.81 16 11 O -0.52 -24.84 14.24 -3.03 -0.04 -24.88 16 12 C -0.11 -4.53 5.64 29.85 0.17 -4.36 16 13 C 0.01 0.33 3.33 29.85 0.10 0.43 16 14 C -0.53 -31.09 9.66 25.60 0.25 -30.84 16 15 H 0.05 3.24 7.99 -2.91 -0.02 3.21 16 16 C 0.02 0.97 5.47 84.65 0.46 1.43 16 17 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 18 Si 0.94 47.74 27.47 68.60 1.88 49.62 16 19 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.26 -13.45 6.54 99.48 0.65 -12.80 16 22 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.10 0.43 7.78 -2.39 -0.02 0.41 16 24 H 0.10 0.43 7.78 -2.39 -0.02 0.41 16 25 H 0.18 1.28 6.04 -2.91 -0.02 1.26 16 26 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 27 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.43 11.04 7.23 -92.71 -0.67 10.37 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 32 H 0.01 0.52 7.53 -2.38 -0.02 0.50 16 33 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -80.84 296.48 3.41 -77.43 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.41 Total: 6.48 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.22 Total: -4.05 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -2.86 Total: -101.03 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.04 Total: -24.88 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.62 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -1.19 Total: -3.57 kcal Total: -80.84 3.41 -77.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593843099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.838 kcal (2) G-P(sol) polarization free energy of solvation -80.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds