Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48494 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46655 * 299.99663 * 3 2 1 6 6 H 1.48498 * 109.47166 * 59.99303 * 3 2 1 7 7 C 1.37884 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46843 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46935 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.46951 * 179.97438 * 11 10 9 13 13 C 1.81404 * 102.99813 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47022 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47075 * 180.02562 * 14 13 12 16 16 C 1.42898 * 114.00044 * 179.97438 * 15 14 13 17 17 H 1.09002 * 115.54907 * 4.41757 * 16 15 14 18 18 C 1.53000 * 117.50097 * 218.74632 * 16 15 14 19 19 C 1.53002 * 117.49971 * 150.08844 * 16 15 14 20 20 F 1.39894 * 117.50008 * 215.00586 * 19 16 15 21 21 F 1.39904 * 117.49452 * 359.97438 * 19 16 15 22 22 H 0.97003 * 120.00329 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47159 * 59.99493 * 9 7 2 24 24 H 1.08996 * 109.46879 * 299.99407 * 9 7 2 25 25 H 1.08998 * 109.47506 * 59.99890 * 10 9 7 26 26 H 1.08996 * 109.47049 * 299.99487 * 10 9 7 27 27 H 1.08998 * 109.47029 * 59.99701 * 11 10 9 28 28 H 1.08996 * 109.46918 * 299.99671 * 11 10 9 29 29 H 1.09008 * 109.46880 * 60.00339 * 13 12 11 30 30 H 1.09000 * 109.47156 * 300.00382 * 13 12 11 31 31 H 1.08994 * 109.46929 * 60.00534 * 14 13 12 32 32 H 1.09000 * 109.47530 * 300.00230 * 14 13 12 33 33 H 1.09008 * 117.49673 * 359.97438 * 18 16 15 34 34 H 1.08999 * 117.49959 * 144.99398 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6591 -6.3659 0.0004 13 6 1.5808 -7.8247 0.0021 14 6 2.4376 -9.0922 0.0010 15 8 1.5882 -10.2414 0.0017 16 6 2.2925 -11.4847 0.0002 17 1 3.3774 -11.4106 0.0744 18 6 1.7185 -12.6208 -0.8489 19 6 1.6181 -12.6795 0.6774 20 9 2.4411 -13.5931 1.3445 21 9 0.3593 -12.4709 1.2512 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8903 25 1 2.8719 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8532 -5.0451 -0.8885 28 1 0.8539 -5.0446 0.8914 29 1 0.9507 -7.8117 -0.8873 30 1 0.9525 -7.8111 0.8927 31 1 3.0680 -9.1054 0.8901 32 1 3.0656 -9.1056 -0.8899 33 1 0.8034 -12.4198 -1.4060 34 1 2.4259 -13.2939 -1.3333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596404222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = -130.593528 kcal Electronic energy + Delta-G solvation = -16733.895388 eV Core-core repulsion = 13429.644905 eV Total energy + Delta-G solvation = -3304.250482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.99819 -47.68178 -38.91046 -35.24864 -34.49770 -32.05748 -31.21687 -27.54326 -24.00717 -23.21514 -22.92445 -22.67784 -20.25244 -18.58953 -17.62447 -16.67238 -16.48237 -16.35681 -16.15687 -15.58366 -14.71330 -14.53784 -14.53050 -14.34251 -14.01399 -13.80559 -13.37839 -13.11281 -13.07812 -12.54624 -11.97439 -11.90597 -11.68036 -11.58943 -10.92941 -10.91613 -10.75465 -10.51869 -9.89335 -9.83670 -9.80493 -9.35809 -9.12581 -8.39554 -7.56152 -6.04184 -4.06806 1.52580 2.47644 2.65018 2.73928 3.03735 3.29553 3.37095 3.41650 3.80064 4.12206 4.23486 4.43483 4.63333 4.64887 4.71583 4.97704 5.06487 5.27958 5.31882 5.41305 5.45460 5.54671 5.57858 6.06627 6.50318 6.50573 6.66563 6.97346 7.60541 7.71980 7.94601 8.36067 8.99851 9.57627 11.07195 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.070034 B = 0.002303 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.708175 B =12154.998202 C =12324.729872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.068 4.068 12 S -0.266 6.266 13 C -0.095 4.095 14 C 0.079 3.921 15 O -0.340 6.340 16 C 0.029 3.971 17 H 0.137 0.863 18 C -0.180 4.180 19 C 0.190 3.810 20 F -0.161 7.161 21 F -0.153 7.153 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -25.408 -1.469 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.216 4.216 12 S -0.039 6.039 13 C -0.243 4.243 14 C 0.002 3.998 15 O -0.258 6.258 16 C -0.031 4.031 17 H 0.155 0.845 18 C -0.218 4.218 19 C 0.153 3.847 20 F -0.141 7.141 21 F -0.133 7.133 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.996 -25.276 -1.424 25.805 hybrid contribution -0.878 0.714 0.223 1.154 sum 4.117 -24.562 -1.201 24.934 Atomic orbital electron populations 1.69969 1.06083 1.26612 1.50815 1.25031 0.94875 0.99355 0.95238 0.86508 0.80134 0.83614 0.77601 1.19672 1.20975 1.20977 1.21252 0.93162 0.90808 1.50657 0.92462 1.19111 0.93797 0.90816 0.97477 1.21483 0.99217 0.91034 1.01685 1.23667 0.98608 0.94650 1.04703 1.86737 1.18188 1.00811 1.98208 1.23156 1.00797 0.94000 1.06320 1.22351 0.92254 0.83022 1.02160 1.87916 1.32574 1.11827 1.93496 1.24033 0.97026 0.82562 0.99514 0.84514 1.24933 1.06003 0.99722 0.91182 1.20769 0.78815 0.94676 0.90474 1.93040 1.70904 1.67490 1.82684 1.93051 1.39302 1.94774 1.86214 0.92985 0.96373 0.96360 0.92286 0.92284 0.90280 0.90266 0.89222 0.89216 0.91494 0.91380 0.85180 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.63 9.11 -34.43 -0.31 -14.94 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 11 C -0.07 -1.14 5.94 37.16 0.22 -0.92 16 12 S -0.27 -3.86 21.74 -107.50 -2.34 -6.20 16 13 C -0.09 -1.08 6.31 37.16 0.23 -0.85 16 14 C 0.08 0.75 5.82 37.16 0.22 0.97 16 15 O -0.34 -3.43 10.48 -35.23 -0.37 -3.80 16 16 C 0.03 0.22 6.43 -26.73 -0.17 0.05 16 17 H 0.14 0.68 7.93 -51.93 -0.41 0.27 16 18 C -0.18 -1.03 10.45 -26.70 -0.28 -1.31 16 19 C 0.19 1.66 5.26 -26.69 -0.14 1.52 16 20 F -0.16 -1.49 17.60 2.25 0.04 -1.45 16 21 F -0.15 -1.74 17.47 2.25 0.04 -1.70 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.09 1.04 8.14 -51.92 -0.42 0.61 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -30.71 318.03 -7.75 -38.46 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -5.03 Total: -5.14 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.61 Total: -15.50 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.37 Total: -3.80 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.34 Total: -6.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.71 -7.75 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596404222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.135 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds