Wall clock time and date at job start Mon Mar 30 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48494 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46655 * 299.99663 * 3 2 1 6 6 H 1.48498 * 109.47166 * 59.99303 * 3 2 1 7 7 C 1.37884 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46843 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46935 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.46951 * 179.97438 * 11 10 9 13 13 C 1.81404 * 102.99813 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47022 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.47075 * 180.02562 * 14 13 12 16 16 C 1.42898 * 114.00044 * 179.97438 * 15 14 13 17 17 H 1.09002 * 115.54907 * 4.41757 * 16 15 14 18 18 C 1.53000 * 117.50097 * 218.74632 * 16 15 14 19 19 C 1.53002 * 117.49971 * 150.08844 * 16 15 14 20 20 F 1.39894 * 117.50008 * 215.00586 * 19 16 15 21 21 F 1.39904 * 117.49452 * 359.97438 * 19 16 15 22 22 H 0.97003 * 120.00329 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47159 * 59.99493 * 9 7 2 24 24 H 1.08996 * 109.46879 * 299.99407 * 9 7 2 25 25 H 1.08998 * 109.47506 * 59.99890 * 10 9 7 26 26 H 1.08996 * 109.47049 * 299.99487 * 10 9 7 27 27 H 1.08998 * 109.47029 * 59.99701 * 11 10 9 28 28 H 1.08996 * 109.46918 * 299.99671 * 11 10 9 29 29 H 1.09008 * 109.46880 * 60.00339 * 13 12 11 30 30 H 1.09000 * 109.47156 * 300.00382 * 13 12 11 31 31 H 1.08994 * 109.46929 * 60.00534 * 14 13 12 32 32 H 1.09000 * 109.47530 * 300.00230 * 14 13 12 33 33 H 1.09008 * 117.49673 * 359.97438 * 18 16 15 34 34 H 1.08999 * 117.49959 * 144.99398 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6591 -6.3659 0.0004 13 6 1.5808 -7.8247 0.0021 14 6 2.4376 -9.0922 0.0010 15 8 1.5882 -10.2414 0.0017 16 6 2.2925 -11.4847 0.0002 17 1 3.3774 -11.4106 0.0744 18 6 1.7185 -12.6208 -0.8489 19 6 1.6181 -12.6795 0.6774 20 9 2.4411 -13.5931 1.3445 21 9 0.3593 -12.4709 1.2512 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8903 25 1 2.8719 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8532 -5.0451 -0.8885 28 1 0.8539 -5.0446 0.8914 29 1 0.9507 -7.8117 -0.8873 30 1 0.9525 -7.8111 0.8927 31 1 3.0680 -9.1054 0.8901 32 1 3.0656 -9.1056 -0.8899 33 1 0.8034 -12.4198 -1.4060 34 1 2.4259 -13.2939 -1.3333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596404222.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:22 Heat of formation + Delta-G solvation = -147.527406 kcal Electronic energy + Delta-G solvation = -16734.629696 eV Core-core repulsion = 13429.644905 eV Total energy + Delta-G solvation = -3304.984790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.67709 -48.39068 -39.57235 -36.37242 -35.85419 -34.05481 -32.03731 -29.43712 -25.57900 -24.19865 -23.68510 -23.29907 -22.00108 -19.25230 -18.58103 -18.26142 -17.38725 -17.05662 -16.94001 -16.83823 -16.48181 -16.16617 -15.29950 -15.06656 -14.83189 -14.64592 -14.44919 -14.39411 -14.17200 -13.63146 -13.52389 -13.41452 -12.83263 -12.78054 -12.55608 -12.37083 -12.33318 -11.66059 -11.46608 -11.32792 -11.16368 -10.94789 -10.57330 -10.43621 -8.71699 -8.21682 -6.32617 0.44807 1.40628 1.41026 1.52503 1.54760 1.87367 2.11973 2.40394 2.41531 3.11992 3.29837 3.55908 3.59749 3.83504 3.97884 4.02451 4.08766 4.12084 4.32663 4.57662 4.59882 4.62482 4.70223 4.80648 4.81235 4.96601 5.13341 5.49032 5.67671 5.81983 5.86316 6.21665 6.83604 7.36774 8.90318 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.070034 B = 0.002303 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.708175 B =12154.998202 C =12324.729872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.068 4.068 12 S -0.264 6.264 13 C -0.087 4.087 14 C 0.084 3.916 15 O -0.360 6.360 16 C 0.026 3.974 17 H 0.164 0.836 18 C -0.151 4.151 19 C 0.156 3.844 20 F -0.168 7.168 21 F -0.176 7.176 22 H 0.264 0.736 23 H -0.003 1.003 24 H -0.004 1.004 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -26.215 -2.193 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.216 4.216 12 S -0.037 6.037 13 C -0.236 4.236 14 C 0.007 3.993 15 O -0.279 6.279 16 C -0.034 4.034 17 H 0.181 0.819 18 C -0.189 4.189 19 C 0.120 3.880 20 F -0.149 7.149 21 F -0.157 7.157 22 H 0.073 0.927 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.487 -26.092 -2.149 26.972 hybrid contribution -1.365 0.862 0.457 1.678 sum 5.122 -25.230 -1.692 25.800 Atomic orbital electron populations 1.70091 1.07759 1.27797 1.51656 1.25978 0.95797 1.03383 0.94688 0.85386 0.79074 0.78704 0.77819 1.18614 1.20287 1.20364 1.21700 0.93603 0.92261 1.50571 0.92163 1.18994 0.94223 0.92448 0.95307 1.21171 0.98018 0.91275 1.01507 1.23394 0.98805 0.94415 1.05011 1.86616 1.17787 1.01110 1.98234 1.23175 1.00504 0.93393 1.06506 1.22280 0.91736 0.82079 1.03222 1.87870 1.33601 1.12734 1.93687 1.24362 0.98143 0.81414 0.99529 0.81887 1.25062 1.06515 0.98443 0.88875 1.21295 0.78308 0.96127 0.92316 1.93016 1.70951 1.67797 1.83096 1.92993 1.40857 1.95012 1.86817 0.92701 0.98459 0.98562 0.92457 0.92303 0.89938 0.90167 0.88753 0.89420 0.90918 0.89841 0.84883 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.08 -3.30 5.16 30.59 0.16 -3.14 16 11 C -0.07 -2.25 5.94 71.98 0.43 -1.82 16 12 S -0.26 -7.25 21.74 -56.49 -1.23 -8.48 16 13 C -0.09 -1.85 6.31 71.98 0.45 -1.40 16 14 C 0.08 1.39 5.82 71.98 0.42 1.81 16 15 O -0.36 -6.56 10.48 -148.98 -1.56 -8.13 16 16 C 0.03 0.32 6.43 30.60 0.20 0.52 16 17 H 0.16 1.10 7.93 -2.39 -0.02 1.08 16 18 C -0.15 -1.32 10.45 30.62 0.32 -1.00 16 19 C 0.16 2.55 5.26 30.62 0.16 2.71 16 20 F -0.17 -2.96 17.60 44.97 0.79 -2.16 16 21 F -0.18 -4.01 17.47 44.97 0.79 -3.23 16 22 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.16 0.38 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -66.56 318.03 5.15 -61.40 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: 1.08 Total: 1.49 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 2.98 Total: -30.86 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.56 Total: -8.13 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 1.58 Total: -5.39 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -1.23 Total: -8.48 kcal Total: -66.56 5.15 -61.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596404222.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.123 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds