Wall clock time and date at job start Mon Mar 30 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99634 * 2 1 4 4 H 1.48496 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47005 * 299.99700 * 3 2 1 6 6 H 1.48502 * 109.47390 * 59.99897 * 3 2 1 7 7 C 1.37876 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.16841 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93236 * 139.67276 * 10 9 7 12 12 C 1.39850 * 111.00108 * 221.29936 * 11 10 9 13 13 C 1.39114 * 120.07672 * 125.54478 * 12 11 10 14 14 F 1.35106 * 120.05929 * 0.24632 * 13 12 11 15 15 C 1.38236 * 119.88457 * 180.25529 * 13 12 11 16 16 C 1.38335 * 120.05063 * 0.02562 * 15 13 12 17 17 C 1.38227 * 120.15759 * 0.02562 * 16 15 13 18 18 C 1.38187 * 120.11570 * 359.97438 * 17 16 15 19 19 N 1.48015 * 120.02524 * 180.02562 * 18 17 16 20 20 O 1.21794 * 120.00021 * 321.50551 * 19 18 17 21 21 O 1.21800 * 119.99622 * 141.50947 * 19 18 17 22 22 C 1.47482 * 87.83470 * 332.98985 * 11 10 9 23 23 H 0.97002 * 120.00725 * 0.02562 * 1 2 3 24 24 H 1.09001 * 113.25475 * 47.05733 * 9 7 2 25 25 H 1.08998 * 113.47675 * 24.91136 * 10 9 7 26 26 H 1.08999 * 113.53404 * 254.44803 * 10 9 7 27 27 H 1.08007 * 119.97267 * 180.02562 * 15 13 12 28 28 H 1.08004 * 119.91507 * 179.97438 * 16 15 13 29 29 H 1.08002 * 119.93918 * 179.97438 * 17 16 15 30 30 H 1.09005 * 113.47566 * 141.77262 * 22 11 10 31 31 H 1.08993 * 113.47891 * 272.24194 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.1498 -3.7437 0.0016 11 7 1.2084 -4.3579 0.9564 12 6 1.8931 -5.0504 1.9601 13 6 1.6471 -4.7615 3.2985 14 9 0.7425 -3.8148 3.6314 15 6 2.3300 -5.4448 4.2874 16 6 3.2567 -6.4136 3.9464 17 6 3.5033 -6.7014 2.6171 18 6 2.8245 -6.0225 1.6232 19 7 3.0898 -6.3327 0.2004 20 8 4.2252 -6.5729 -0.1690 21 8 2.1726 -6.3476 -0.6008 22 6 0.8566 -2.9959 1.3996 23 1 -0.4851 0.8400 -0.0004 24 1 0.4447 -2.5311 -0.7311 25 1 3.1394 -3.5647 0.4218 26 1 2.1866 -4.2538 -0.9610 27 1 2.1398 -5.2219 5.3270 28 1 3.7893 -6.9458 4.7208 29 1 4.2279 -7.4582 2.3549 30 1 -0.2034 -2.8717 1.6215 31 1 1.5011 -2.6174 2.1929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596432656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:43 Heat of formation + Delta-G solvation = 33.527907 kcal Electronic energy + Delta-G solvation = -20444.228356 eV Core-core repulsion = 17031.570723 eV Total energy + Delta-G solvation = -3412.657633 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.05596 -42.07870 -40.13121 -38.26827 -36.19024 -33.13504 -31.87405 -31.10943 -27.88438 -26.38881 -25.39714 -24.50480 -22.33450 -21.92026 -19.34377 -19.23760 -18.46121 -17.40945 -17.38122 -16.42943 -16.22180 -16.04865 -15.71760 -15.05187 -14.60470 -14.41207 -13.78056 -13.11938 -12.89001 -12.62088 -12.22876 -12.06217 -11.65328 -11.36263 -11.29596 -11.06842 -10.81573 -10.78304 -10.61995 -10.42395 -9.74735 -9.51368 -9.36301 -9.17005 -8.59934 -8.05580 -6.20673 -4.27285 0.07624 0.78724 1.27221 1.59333 3.04157 3.20442 3.29157 3.32810 3.84470 4.15137 4.28594 4.34120 4.39972 4.73918 4.89084 5.06999 5.30792 5.33515 5.60978 5.62892 5.78036 5.86934 6.00914 6.17883 6.33727 6.34042 6.60557 6.64828 6.81545 7.41337 7.53505 7.76593 7.91988 8.12941 8.76121 9.39370 10.88816 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.006755 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.111123 B = 4143.816165 C = 4771.779780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.051 3.949 10 C -0.010 4.010 11 N -0.431 5.431 12 C 0.130 3.870 13 C 0.065 3.935 14 F -0.114 7.114 15 C -0.087 4.087 16 C -0.128 4.128 17 C -0.051 4.051 18 C -0.053 4.053 19 N 0.031 4.969 20 O -0.176 6.176 21 O -0.123 6.123 22 C 0.006 3.994 23 H 0.264 0.736 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -11.119 9.131 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.032 3.968 10 C -0.134 4.134 11 N -0.143 5.143 12 C 0.026 3.974 13 C 0.042 3.958 14 F -0.093 7.093 15 C -0.107 4.107 16 C -0.147 4.147 17 C -0.071 4.071 18 C -0.139 4.139 19 N 0.553 4.447 20 O -0.386 6.386 21 O -0.347 6.347 22 C -0.120 4.120 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.169 0.831 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.101 0.899 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.324 -11.228 9.546 15.359 hybrid contribution 0.753 1.245 0.171 1.465 sum 5.078 -9.983 9.717 14.828 Atomic orbital electron populations 1.69961 1.06048 1.27112 1.48652 1.25017 0.94875 0.99385 0.94084 0.86485 0.80169 0.83276 0.77841 1.19597 1.20619 1.20819 1.20954 0.92858 0.89719 1.52484 0.92088 1.20158 0.94110 0.90462 0.92105 1.24514 0.95076 0.97761 0.96092 1.66029 1.24517 1.15253 1.08511 1.19737 0.89776 0.94931 0.92952 1.17236 0.94748 0.92842 0.90968 1.91602 1.64199 1.61050 1.92414 1.21419 0.94871 0.94526 0.99874 1.20783 0.99645 0.99243 0.95073 1.20817 0.96655 0.98117 0.91470 1.20454 1.05634 1.06091 0.81727 1.43240 1.00376 0.98369 1.02700 1.94509 1.07962 1.52995 1.83135 1.94591 1.37813 1.53041 1.49243 1.24635 1.02288 0.82287 1.02777 0.92573 0.90649 0.91967 0.89134 0.83145 0.83147 0.83320 0.89865 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 13.26 55.43 0.74 -24.01 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.97 8.82 -34.44 -0.30 -14.27 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.05 1.26 3.77 -91.24 -0.34 0.92 16 10 C -0.01 -0.21 5.14 -7.54 -0.04 -0.25 16 11 N -0.43 -9.00 5.79 -180.49 -1.05 -10.05 16 12 C 0.13 2.34 5.28 -83.67 -0.44 1.90 16 13 C 0.06 1.01 6.73 -39.26 -0.26 0.75 16 14 F -0.11 -1.97 13.85 2.25 0.03 -1.94 16 15 C -0.09 -0.96 10.02 -39.55 -0.40 -1.36 16 16 C -0.13 -1.21 10.04 -39.55 -0.40 -1.60 16 17 C -0.05 -0.61 9.67 -39.60 -0.38 -0.99 16 18 C -0.05 -0.87 6.14 -79.76 -0.49 -1.36 16 19 N 0.03 0.57 3.44 34.05 0.12 0.69 16 20 O -0.18 -3.15 18.97 -29.46 -0.56 -3.71 16 21 O -0.12 -2.43 15.78 -29.46 -0.46 -2.90 16 22 C 0.01 0.14 5.22 -7.54 -0.04 0.10 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.08 2.03 8.11 -51.93 -0.42 1.61 16 25 H 0.06 1.37 7.77 -51.93 -0.40 0.96 16 26 H 0.09 1.98 6.44 -51.93 -0.33 1.65 16 27 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 28 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.15 1.43 8.03 -52.49 -0.42 1.01 16 30 H 0.08 1.94 8.05 -51.93 -0.42 1.52 16 31 H 0.07 1.68 6.33 -51.93 -0.33 1.35 16 LS Contribution 275.19 15.07 4.15 4.15 Total: -1.00 -29.26 275.19 -7.97 -37.23 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -2.72 Total: -0.71 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -3.20 Total: -14.37 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.19 Total: -33.37 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -1.02 Total: -6.61 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.03 Total: -1.94 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.26 -7.97 -37.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596432656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.755 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds