Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99634 * 2 1 4 4 H 1.48496 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47005 * 299.99700 * 3 2 1 6 6 H 1.48502 * 109.47390 * 59.99897 * 3 2 1 7 7 C 1.37876 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.16841 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.93236 * 139.67276 * 10 9 7 12 12 C 1.39850 * 111.00108 * 221.29936 * 11 10 9 13 13 C 1.39114 * 120.07672 * 125.54478 * 12 11 10 14 14 F 1.35106 * 120.05929 * 0.24632 * 13 12 11 15 15 C 1.38236 * 119.88457 * 180.25529 * 13 12 11 16 16 C 1.38335 * 120.05063 * 0.02562 * 15 13 12 17 17 C 1.38227 * 120.15759 * 0.02562 * 16 15 13 18 18 C 1.38187 * 120.11570 * 359.97438 * 17 16 15 19 19 N 1.48015 * 120.02524 * 180.02562 * 18 17 16 20 20 O 1.21794 * 120.00021 * 321.50551 * 19 18 17 21 21 O 1.21800 * 119.99622 * 141.50947 * 19 18 17 22 22 C 1.47482 * 87.83470 * 332.98985 * 11 10 9 23 23 H 0.97002 * 120.00725 * 0.02562 * 1 2 3 24 24 H 1.09001 * 113.25475 * 47.05733 * 9 7 2 25 25 H 1.08998 * 113.47675 * 24.91136 * 10 9 7 26 26 H 1.08999 * 113.53404 * 254.44803 * 10 9 7 27 27 H 1.08007 * 119.97267 * 180.02562 * 15 13 12 28 28 H 1.08004 * 119.91507 * 179.97438 * 16 15 13 29 29 H 1.08002 * 119.93918 * 179.97438 * 17 16 15 30 30 H 1.09005 * 113.47566 * 141.77262 * 22 11 10 31 31 H 1.08993 * 113.47891 * 272.24194 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.1498 -3.7437 0.0016 11 7 1.2084 -4.3579 0.9564 12 6 1.8931 -5.0504 1.9601 13 6 1.6471 -4.7615 3.2985 14 9 0.7425 -3.8148 3.6314 15 6 2.3300 -5.4448 4.2874 16 6 3.2567 -6.4136 3.9464 17 6 3.5033 -6.7014 2.6171 18 6 2.8245 -6.0225 1.6232 19 7 3.0898 -6.3327 0.2004 20 8 4.2252 -6.5729 -0.1690 21 8 2.1726 -6.3476 -0.6008 22 6 0.8566 -2.9959 1.3996 23 1 -0.4851 0.8400 -0.0004 24 1 0.4447 -2.5311 -0.7311 25 1 3.1394 -3.5647 0.4218 26 1 2.1866 -4.2538 -0.9610 27 1 2.1398 -5.2219 5.3270 28 1 3.7893 -6.9458 4.7208 29 1 4.2279 -7.4582 2.3549 30 1 -0.2034 -2.8717 1.6215 31 1 1.5011 -2.6174 2.1929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596432656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = 15.070004 kcal Electronic energy + Delta-G solvation = -20445.028751 eV Core-core repulsion = 17031.570723 eV Total energy + Delta-G solvation = -3413.458027 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.29455 -43.44753 -41.64606 -39.51931 -37.60147 -35.02278 -33.19158 -32.40767 -29.46100 -27.81670 -27.11178 -26.21448 -23.57177 -23.19975 -21.17759 -20.50844 -19.84514 -19.09606 -18.72398 -17.71583 -17.64327 -17.37114 -17.09288 -16.56871 -16.36320 -15.84716 -15.17519 -14.37453 -14.25747 -14.15205 -13.51120 -13.45381 -13.29765 -13.08871 -12.86673 -12.73352 -12.44519 -12.31745 -12.17687 -12.16436 -11.45880 -11.16384 -11.07570 -10.64460 -10.54036 -9.45003 -8.26664 -6.40885 -1.16310 -0.29974 0.01636 0.32808 1.37922 1.39803 1.51877 2.01640 2.34550 2.63479 2.85205 2.98722 3.14525 3.49185 3.61322 3.84567 3.86988 4.02063 4.16406 4.24737 4.43942 4.54509 4.61555 4.81506 4.85614 4.92675 4.95546 5.13511 5.39249 5.41410 5.65177 5.87693 6.08432 6.47559 6.66924 7.29116 8.83636 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.006755 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.111123 B = 4143.816165 C = 4771.779780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.011 3.989 11 N -0.440 5.440 12 C 0.085 3.915 13 C 0.041 3.959 14 F -0.132 7.132 15 C -0.064 4.064 16 C -0.090 4.090 17 C -0.043 4.043 18 C -0.067 4.067 19 N 0.032 4.968 20 O -0.151 6.151 21 O -0.185 6.185 22 C 0.028 3.972 23 H 0.267 0.733 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.193 0.807 28 H 0.212 0.788 29 H 0.180 0.820 30 H 0.064 0.936 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -12.400 12.278 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.014 3.986 10 C -0.115 4.115 11 N -0.153 5.153 12 C -0.018 4.018 13 C 0.019 3.981 14 F -0.111 7.111 15 C -0.083 4.083 16 C -0.109 4.109 17 C -0.063 4.063 18 C -0.153 4.153 19 N 0.550 4.450 20 O -0.371 6.371 21 O -0.395 6.395 22 C -0.099 4.099 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.210 0.790 28 H 0.229 0.771 29 H 0.198 0.802 30 H 0.083 0.917 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.771 -12.534 12.670 19.065 hybrid contribution 0.143 1.465 -0.627 1.600 sum 6.914 -11.069 12.042 17.758 Atomic orbital electron populations 1.70081 1.07576 1.28091 1.49628 1.25846 0.95675 1.02863 0.93590 0.85424 0.78987 0.78784 0.78021 1.18899 1.20182 1.20059 1.21219 0.92907 0.90871 1.52626 0.92273 1.20055 0.94113 0.91523 0.92959 1.24125 0.94542 0.96354 0.96453 1.65973 1.25543 1.14362 1.09455 1.19847 0.92053 0.96535 0.93318 1.17707 0.95615 0.93708 0.91077 1.91552 1.65091 1.62062 1.92367 1.22001 0.92840 0.92764 1.00690 1.21550 0.97316 0.97010 0.95010 1.21421 0.95847 0.97537 0.91457 1.20788 1.06655 1.06958 0.80897 1.43598 1.00002 0.97672 1.03698 1.94454 1.07873 1.51164 1.83655 1.94610 1.38133 1.56233 1.50545 1.24171 1.00863 0.84035 1.00863 0.92364 0.94073 0.92309 0.89919 0.78955 0.77132 0.80239 0.91697 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 13.26 21.45 0.28 -53.14 16 2 C 0.02 1.16 5.46 84.65 0.46 1.62 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -29.97 8.82 25.60 0.23 -29.74 16 8 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.03 1.74 3.77 -11.20 -0.04 1.69 16 10 C 0.01 0.51 5.14 83.58 0.43 0.94 16 11 N -0.44 -19.39 5.79 -724.93 -4.20 -23.58 16 12 C 0.08 3.04 5.28 38.20 0.20 3.24 16 13 C 0.04 1.22 6.73 22.48 0.15 1.37 16 14 F -0.13 -4.56 13.85 44.97 0.62 -3.93 16 15 C -0.06 -1.08 10.02 22.29 0.22 -0.85 16 16 C -0.09 -1.08 10.04 22.29 0.22 -0.85 16 17 C -0.04 -0.82 9.67 22.26 0.22 -0.61 16 18 C -0.07 -2.10 6.14 36.50 0.22 -1.88 16 19 N 0.03 1.18 3.44 -46.18 -0.16 1.02 16 20 O -0.15 -5.23 18.97 18.89 0.36 -4.87 16 21 O -0.19 -7.72 15.78 18.89 0.30 -7.43 16 22 C 0.03 1.32 5.22 83.58 0.44 1.75 16 23 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.04 2.42 8.11 -2.39 -0.02 2.40 16 25 H 0.06 2.70 7.77 -2.39 -0.02 2.68 16 26 H 0.08 3.91 6.44 -2.39 -0.02 3.89 16 27 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 28 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 29 H 0.18 2.37 8.03 -2.91 -0.02 2.35 16 30 H 0.06 3.26 8.05 -2.38 -0.02 3.24 16 31 H 0.07 3.39 6.33 -2.39 -0.02 3.38 16 Total: -1.00 -69.80 275.19 3.15 -66.65 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.17 Total: 3.61 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.75 Total: -23.31 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -4.07 Total: -75.70 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.66 Total: -12.30 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.62 Total: -3.93 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -69.80 3.15 -66.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596432656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.719 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds