Wall clock time and date at job start Mon Mar 30 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47090 * 239.99853 * 3 2 1 5 5 H 1.48504 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46918 * 119.99898 * 3 2 1 7 7 C 1.37875 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.53507 * 114.17214 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93209 * 220.32723 * 10 9 7 12 12 C 1.39819 * 110.99866 * 138.70098 * 11 10 9 13 13 C 1.38898 * 120.05420 * 305.86728 * 12 11 10 14 14 C 1.38095 * 119.95586 * 180.02562 * 13 12 11 15 15 C 1.38485 * 120.04916 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.95264 * 179.97438 * 15 14 13 17 17 C 1.38444 * 120.09872 * 359.97438 * 15 14 13 18 18 C 1.38142 * 120.04625 * 359.97438 * 17 15 14 19 19 N 1.48015 * 120.02231 * 180.02562 * 18 17 15 20 20 O 1.21794 * 119.99864 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99792 * 179.97438 * 19 18 17 22 22 C 1.47485 * 87.83504 * 27.01072 * 11 10 9 23 23 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 24 24 H 1.09006 * 113.38024 * 313.07992 * 9 7 2 25 25 H 1.08998 * 113.47983 * 105.55942 * 10 9 7 26 26 H 1.09000 * 113.52745 * 335.09999 * 10 9 7 27 27 H 1.08010 * 120.01977 * 0.04641 * 13 12 11 28 28 H 1.08001 * 119.97915 * 179.71935 * 14 13 12 29 29 H 1.07997 * 119.97716 * 179.97438 * 17 15 14 30 30 H 1.08998 * 113.47951 * 87.75836 * 22 11 10 31 31 H 1.09000 * 113.47298 * 218.22649 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2076 -4.3583 -0.9533 12 6 1.8913 -5.0511 -1.9570 13 6 2.8680 -4.4067 -2.7055 14 6 3.5417 -5.0928 -3.6967 15 6 3.2438 -6.4222 -3.9451 16 9 3.9038 -7.0913 -4.9156 17 6 2.2708 -7.0666 -3.2003 18 6 1.5951 -6.3845 -2.2071 19 7 0.5553 -7.0741 -1.4108 20 8 0.2949 -8.2432 -1.6315 21 8 -0.0398 -6.4724 -0.5349 22 6 0.8555 -2.9965 -1.3969 23 1 -0.4849 0.8400 0.0004 24 1 0.4427 -2.5319 0.7310 25 1 2.1865 -4.2528 0.9636 26 1 3.1394 -3.5659 -0.4202 27 1 3.1005 -3.3698 -2.5121 28 1 4.2979 -4.5908 -4.2819 29 1 2.0398 -8.1033 -3.3960 30 1 1.4995 -2.6183 -2.1908 31 1 -0.2046 -2.8724 -1.6179 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596434197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:09 Heat of formation + Delta-G solvation = 31.134207 kcal Electronic energy + Delta-G solvation = -19870.100769 eV Core-core repulsion = 16457.339338 eV Total energy + Delta-G solvation = -3412.761431 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.27026 -41.92333 -40.49888 -37.96338 -36.11110 -32.99585 -32.14681 -31.00544 -27.77454 -26.19635 -25.13541 -24.57251 -22.84868 -21.75125 -19.38123 -18.90184 -18.37620 -17.34971 -17.19310 -16.65053 -16.53752 -15.94623 -15.83293 -14.78048 -14.56656 -14.38526 -13.94980 -13.56255 -13.26915 -12.41742 -12.19141 -11.95923 -11.64689 -11.19779 -11.16507 -11.05661 -10.81649 -10.70240 -10.61813 -10.15168 -9.78940 -9.54820 -9.22614 -8.91093 -8.61213 -8.37019 -6.21307 -4.28492 -0.09284 0.62021 1.48026 1.62548 3.00249 3.19439 3.26592 3.27280 3.76926 4.01692 4.26979 4.33249 4.45943 4.71323 4.94757 5.07384 5.13192 5.41251 5.62092 5.70602 5.84460 5.88957 6.09970 6.13479 6.38703 6.43731 6.68214 6.70361 6.87164 7.52240 7.64095 7.80623 8.03454 8.14453 8.75251 9.38199 10.87717 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.005609 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.595900 B = 4990.403234 C = 5916.680840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.001 3.999 11 N -0.446 5.446 12 C 0.140 3.860 13 C -0.127 4.127 14 C -0.093 4.093 15 C 0.085 3.915 16 F -0.129 7.129 17 C -0.093 4.093 18 C -0.012 4.012 19 N 0.028 4.972 20 O -0.207 6.207 21 O -0.082 6.082 22 C 0.003 3.997 23 H 0.265 0.735 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.065 0.935 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -8.963 -7.217 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.032 3.968 10 C -0.124 4.124 11 N -0.167 5.167 12 C 0.043 3.957 13 C -0.148 4.148 14 C -0.112 4.112 15 C 0.064 3.936 16 F -0.107 7.107 17 C -0.114 4.114 18 C -0.097 4.097 19 N 0.550 4.450 20 O -0.407 6.407 21 O -0.316 6.316 22 C -0.123 4.123 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.184 0.816 28 H 0.170 0.830 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.416 -9.142 -7.490 13.448 hybrid contribution 0.945 0.978 -0.555 1.469 sum 7.361 -8.163 -8.045 13.622 Atomic orbital electron populations 1.69950 1.06036 1.27267 1.48354 1.25026 0.94826 0.99287 0.94232 0.86649 0.79654 0.82931 0.78736 1.20213 1.21125 1.20024 1.20932 0.92730 0.89963 1.52656 0.92219 1.20108 0.94230 0.90477 0.91960 1.24316 0.95159 0.97440 0.95502 1.67444 1.25956 1.15540 1.07733 1.19832 0.91263 0.91096 0.93549 1.21898 0.95154 1.02486 0.95217 1.21481 0.99745 0.92337 0.97652 1.17182 0.95137 0.90854 0.90384 1.91546 1.78994 1.80234 1.59938 1.20761 0.94643 1.02219 0.93729 1.20734 0.96969 0.92936 0.99038 1.43271 1.00679 1.00469 1.00538 1.94490 1.71152 1.00566 1.74536 1.94679 1.47936 1.66759 1.22178 1.24518 1.01600 0.83627 1.02600 0.92492 0.90843 0.90698 0.91888 0.81564 0.83000 0.82056 0.91700 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.79 13.26 55.43 0.74 -23.05 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.52 -12.90 8.82 -34.44 -0.30 -13.20 16 8 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.05 1.17 3.77 -91.25 -0.34 0.82 16 10 C 0.00 0.03 7.10 -7.54 -0.05 -0.03 16 11 N -0.45 -8.48 4.33 -180.55 -0.78 -9.26 16 12 C 0.14 2.29 5.24 -83.74 -0.44 1.85 16 13 C -0.13 -1.72 7.81 -39.39 -0.31 -2.02 16 14 C -0.09 -1.02 10.02 -39.54 -0.40 -1.41 16 15 C 0.08 0.99 7.30 -39.41 -0.29 0.70 16 16 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 17 C -0.09 -1.21 9.53 -39.54 -0.38 -1.59 16 18 C -0.01 -0.20 6.87 -79.75 -0.55 -0.75 16 19 N 0.03 0.51 4.45 34.06 0.15 0.66 16 20 O -0.21 -3.66 18.45 -29.46 -0.54 -4.20 16 21 O -0.08 -1.62 17.10 -29.46 -0.50 -2.13 16 22 C 0.00 0.06 7.07 -7.54 -0.05 0.00 16 23 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 24 H 0.07 1.87 8.11 -51.93 -0.42 1.45 16 25 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.06 1.10 6.60 -51.93 -0.34 0.76 16 27 H 0.17 2.22 6.06 -52.48 -0.32 1.90 16 28 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.16 1.85 7.61 -52.49 -0.40 1.45 16 30 H 0.06 1.25 5.79 -51.93 -0.30 0.95 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 279.33 15.07 4.21 4.21 Total: -1.00 -27.00 279.33 -7.52 -34.52 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.60 Total: 0.03 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.21 Total: -13.92 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.11 Total: -31.66 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -1.05 Total: -6.33 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.00 -7.52 -34.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596434197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds