Wall clock time and date at job start Mon Mar 30 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48498 * 109.47090 * 239.99853 * 3 2 1 5 5 H 1.48504 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46918 * 119.99898 * 3 2 1 7 7 C 1.37875 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.53507 * 114.17214 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93209 * 220.32723 * 10 9 7 12 12 C 1.39819 * 110.99866 * 138.70098 * 11 10 9 13 13 C 1.38898 * 120.05420 * 305.86728 * 12 11 10 14 14 C 1.38095 * 119.95586 * 180.02562 * 13 12 11 15 15 C 1.38485 * 120.04916 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.95264 * 179.97438 * 15 14 13 17 17 C 1.38444 * 120.09872 * 359.97438 * 15 14 13 18 18 C 1.38142 * 120.04625 * 359.97438 * 17 15 14 19 19 N 1.48015 * 120.02231 * 180.02562 * 18 17 15 20 20 O 1.21794 * 119.99864 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99792 * 179.97438 * 19 18 17 22 22 C 1.47485 * 87.83504 * 27.01072 * 11 10 9 23 23 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 24 24 H 1.09006 * 113.38024 * 313.07992 * 9 7 2 25 25 H 1.08998 * 113.47983 * 105.55942 * 10 9 7 26 26 H 1.09000 * 113.52745 * 335.09999 * 10 9 7 27 27 H 1.08010 * 120.01977 * 0.04641 * 13 12 11 28 28 H 1.08001 * 119.97915 * 179.71935 * 14 13 12 29 29 H 1.07997 * 119.97716 * 179.97438 * 17 15 14 30 30 H 1.08998 * 113.47951 * 87.75836 * 22 11 10 31 31 H 1.09000 * 113.47298 * 218.22649 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2076 -4.3583 -0.9533 12 6 1.8913 -5.0511 -1.9570 13 6 2.8680 -4.4067 -2.7055 14 6 3.5417 -5.0928 -3.6967 15 6 3.2438 -6.4222 -3.9451 16 9 3.9038 -7.0913 -4.9156 17 6 2.2708 -7.0666 -3.2003 18 6 1.5951 -6.3845 -2.2071 19 7 0.5553 -7.0741 -1.4108 20 8 0.2949 -8.2432 -1.6315 21 8 -0.0398 -6.4724 -0.5349 22 6 0.8555 -2.9965 -1.3969 23 1 -0.4849 0.8400 0.0004 24 1 0.4427 -2.5319 0.7310 25 1 2.1865 -4.2528 0.9636 26 1 3.1394 -3.5659 -0.4202 27 1 3.1005 -3.3698 -2.5121 28 1 4.2979 -4.5908 -4.2819 29 1 2.0398 -8.1033 -3.3960 30 1 1.4995 -2.6183 -2.1908 31 1 -0.2046 -2.8724 -1.6179 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596434197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:08 Heat of formation + Delta-G solvation = 16.707276 kcal Electronic energy + Delta-G solvation = -19870.726368 eV Core-core repulsion = 16457.339338 eV Total energy + Delta-G solvation = -3413.387030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.20032 -43.26242 -41.90395 -39.23435 -37.50709 -34.81710 -33.26610 -32.38175 -29.28718 -27.56953 -26.73479 -26.12595 -24.11131 -22.99768 -20.67308 -20.48022 -19.71816 -18.90581 -18.54043 -17.73025 -17.71713 -17.35326 -16.88573 -16.42457 -16.05609 -15.64554 -15.38302 -14.69546 -14.52014 -13.81380 -13.69861 -13.20827 -13.02179 -12.91747 -12.74550 -12.60022 -12.36230 -12.23517 -12.14291 -11.87002 -11.28531 -10.99959 -10.83108 -10.52540 -10.06140 -9.84701 -8.14241 -6.27135 -1.32251 -0.44419 0.21656 0.37227 1.47184 1.49352 1.56383 1.92524 2.43244 2.68423 2.81016 3.15775 3.26186 3.55264 3.63211 3.66725 4.02962 4.25694 4.30739 4.38464 4.46305 4.62627 4.67974 4.80371 4.88375 5.11986 5.13754 5.16072 5.36480 5.61483 5.81930 6.20644 6.27014 6.59754 6.83600 7.43037 8.95276 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.005609 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.595900 B = 4990.403234 C = 5916.680840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.033 3.967 10 C 0.017 3.983 11 N -0.456 5.456 12 C 0.113 3.887 13 C -0.126 4.126 14 C -0.064 4.064 15 C 0.100 3.900 16 F -0.119 7.119 17 C -0.086 4.086 18 C -0.027 4.027 19 N 0.031 4.969 20 O -0.182 6.182 21 O -0.150 6.150 22 C 0.017 3.983 23 H 0.263 0.737 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.194 0.806 29 H 0.178 0.822 30 H 0.082 0.918 31 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.537 -9.443 -9.473 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.014 3.986 10 C -0.108 4.108 11 N -0.177 5.177 12 C 0.016 3.984 13 C -0.146 4.146 14 C -0.083 4.083 15 C 0.080 3.920 16 F -0.097 7.097 17 C -0.106 4.106 18 C -0.111 4.111 19 N 0.548 4.452 20 O -0.393 6.393 21 O -0.368 6.368 22 C -0.110 4.110 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.189 0.811 28 H 0.211 0.789 29 H 0.196 0.804 30 H 0.100 0.900 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.376 -9.546 -9.671 16.509 hybrid contribution 0.117 0.918 -0.007 0.926 sum 9.493 -8.628 -9.677 16.069 Atomic orbital electron populations 1.70102 1.07735 1.27779 1.50335 1.25831 0.95445 1.02760 0.94180 0.85618 0.78270 0.78624 0.79187 1.18743 1.21762 1.19613 1.21294 0.93316 0.90590 1.51402 0.91105 1.19974 0.94252 0.91898 0.92509 1.24135 0.95446 0.95209 0.96033 1.67247 1.26987 1.14607 1.08821 1.19878 0.92895 0.91408 0.94201 1.21898 0.94574 1.02657 0.95479 1.21832 0.98824 0.91691 0.95917 1.17145 0.94146 0.90970 0.89714 1.91590 1.78599 1.80125 1.59416 1.20946 0.94205 1.02906 0.92568 1.20811 0.97244 0.93030 1.00062 1.43613 1.00845 1.00401 1.00375 1.94436 1.70502 1.00817 1.73570 1.94702 1.50390 1.67141 1.24534 1.24232 1.00273 0.84999 1.01492 0.92833 0.95123 0.90878 0.89627 0.81150 0.78862 0.80440 0.90038 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.55 13.26 21.45 0.28 -51.26 16 2 C 0.02 0.92 5.46 84.65 0.46 1.38 16 3 Si 0.96 40.02 29.54 68.60 2.03 42.04 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.53 -26.04 8.82 25.60 0.23 -25.82 16 8 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 9 C 0.03 1.55 3.77 -11.20 -0.04 1.51 16 10 C 0.02 0.67 7.10 83.58 0.59 1.26 16 11 N -0.46 -17.68 4.33 -725.13 -3.14 -20.81 16 12 C 0.11 3.57 5.24 38.17 0.20 3.77 16 13 C -0.13 -2.98 7.81 22.39 0.17 -2.81 16 14 C -0.06 -1.07 10.02 22.29 0.22 -0.85 16 15 C 0.10 1.88 7.30 22.38 0.16 2.04 16 16 F -0.12 -2.08 17.26 44.97 0.78 -1.30 16 17 C -0.09 -1.96 9.53 22.30 0.21 -1.75 16 18 C -0.03 -0.82 6.87 36.50 0.25 -0.57 16 19 N 0.03 1.11 4.45 -46.16 -0.21 0.90 16 20 O -0.18 -6.30 18.45 18.89 0.35 -5.95 16 21 O -0.15 -6.26 17.10 18.89 0.32 -5.93 16 22 C 0.02 0.71 7.07 83.58 0.59 1.30 16 23 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 24 H 0.03 1.68 8.11 -2.38 -0.02 1.66 16 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.09 2.85 6.60 -2.39 -0.02 2.83 16 27 H 0.17 3.96 6.06 -2.91 -0.02 3.94 16 28 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.18 3.45 7.61 -2.91 -0.02 3.42 16 30 H 0.08 3.10 5.79 -2.39 -0.01 3.09 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -60.82 279.33 4.65 -56.17 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.18 Total: 6.67 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.05 Total: -20.53 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -3.06 Total: -71.17 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.67 Total: -11.88 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -60.82 4.65 -56.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596434197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.876 kcal (2) G-P(sol) polarization free energy of solvation -60.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds