Wall clock time and date at job start Mon Mar 30 2020 07:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.38999 * 120.00291 * 179.97438 * 14 12 2 16 16 N 1.28925 * 124.93308 * 359.69734 * 15 14 12 17 17 C 1.33703 * 117.63965 * 179.78626 * 16 15 14 18 18 C 1.33686 * 113.24739 * 0.47885 * 17 16 15 19 19 S 1.70736 * 124.93188 * 180.02562 * 15 14 12 20 20 C 1.51754 * 110.90111 * 179.79314 * 18 17 16 21 21 C 1.54304 * 104.79640 * 17.26093 * 20 18 17 22 22 C 1.52633 * 137.04967 * 180.11510 * 17 16 15 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 28 28 H 1.09006 * 110.36726 * 136.08442 * 20 18 17 29 29 H 1.08992 * 110.37754 * 258.31363 * 20 18 17 30 30 H 1.09003 * 110.97700 * 91.91180 * 21 20 18 31 31 H 1.08997 * 110.97389 * 215.65256 * 21 20 18 32 32 H 1.08996 * 110.31767 * 44.07283 * 22 17 16 33 33 H 1.08996 * 110.32282 * 281.86861 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1704 -0.9046 -3.5896 16 7 2.9197 -1.9538 -3.5822 17 6 3.2778 -2.4685 -4.7631 18 6 2.7939 -1.7851 -5.8052 19 16 1.8370 -0.4318 -5.1959 20 6 3.2358 -2.4107 -7.1152 21 6 3.6996 -3.8327 -6.7362 22 6 4.1118 -3.6455 -5.2621 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 1.1493 0.5391 -2.5436 28 1 2.4005 -2.4577 -7.8140 29 1 4.0600 -1.8436 -7.5477 30 1 2.8808 -4.5468 -6.8248 31 1 4.5505 -4.1405 -7.3438 32 1 3.8816 -4.5428 -4.6878 33 1 5.1743 -3.4129 -5.1928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596678979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:18 Heat of formation + Delta-G solvation = 17.478420 kcal Electronic energy + Delta-G solvation = -17496.174360 eV Core-core repulsion = 14649.033946 eV Total energy + Delta-G solvation = -2847.140414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31508 -38.94957 -36.05021 -33.85729 -33.66214 -30.53882 -28.43858 -27.47240 -25.21827 -24.47507 -22.33086 -21.23889 -20.42605 -18.48733 -17.83768 -16.65491 -16.09289 -15.96473 -15.38896 -14.77616 -14.51260 -13.96799 -13.52738 -13.13203 -13.09817 -12.84562 -12.59658 -12.14730 -11.67302 -11.32266 -11.28041 -11.10459 -11.04638 -10.81477 -10.74150 -10.37569 -10.02083 -9.94662 -9.44394 -9.07312 -8.99603 -8.56121 -8.34718 -7.79112 -6.08862 -4.12607 1.01073 1.11684 1.83586 2.97386 3.25939 3.35186 3.37207 3.44374 3.72782 4.22778 4.44528 4.49316 4.83409 4.86450 5.24836 5.37490 5.50556 5.57173 5.67446 5.72772 5.80176 6.00518 6.02836 6.20695 6.49424 6.69157 6.71502 6.82836 7.33014 7.52948 7.73079 7.95886 8.12534 8.32540 8.95645 9.00427 9.53233 10.98770 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037575 B = 0.004519 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.007191 B = 6193.899079 C = 6824.882806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.037 3.963 3 H 0.058 0.942 4 C -0.505 4.505 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.903 3.097 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.509 3.491 13 O -0.472 6.472 14 N -0.644 5.644 15 C 0.305 3.695 16 N -0.478 5.478 17 C 0.084 3.916 18 C -0.288 4.288 19 S 0.103 5.897 20 C -0.027 4.027 21 C -0.115 4.115 22 C -0.041 4.041 23 H 0.034 0.966 24 H 0.097 0.903 25 H 0.012 0.988 26 H 0.263 0.737 27 H 0.418 0.582 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -2.364 -18.812 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 H 0.076 0.924 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.731 3.269 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.296 3.704 13 O -0.338 6.338 14 N -0.297 5.297 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.047 4.047 18 C -0.410 4.410 19 S 0.356 5.644 20 C -0.067 4.067 21 C -0.154 4.154 22 C -0.081 4.081 23 H 0.053 0.947 24 H 0.116 0.884 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.256 0.744 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.133 -2.316 -18.337 18.518 hybrid contribution 0.393 -0.524 0.841 1.066 sum 1.525 -2.841 -17.496 17.791 Atomic orbital electron populations 1.21798 0.96174 1.00172 1.01212 1.18942 0.94360 0.96963 0.88188 0.92421 1.21072 1.31449 1.13026 0.88766 0.90689 1.24935 0.94960 0.95019 0.99135 1.69851 1.36841 1.22949 1.23849 0.86456 0.79337 0.79716 0.81375 1.21299 1.20112 1.20110 1.22621 0.79341 0.85176 0.83223 1.90660 1.33724 1.24459 1.84955 1.44106 1.51967 1.30653 1.02981 1.23594 0.97070 0.93751 0.92177 1.65646 1.15903 1.10812 1.27519 1.21451 0.99026 0.98880 0.85372 1.26510 1.10028 1.02030 1.02417 1.83470 1.51719 1.29237 0.99976 1.20522 1.00292 0.94440 0.91489 1.22340 1.01678 0.96259 0.95129 1.20861 0.98167 0.94198 0.94886 0.94697 0.88405 0.96862 0.92759 0.74438 0.90926 0.90349 0.90468 0.89718 0.89927 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.87 37.16 0.33 -2.71 16 2 C 0.04 0.91 2.64 -92.93 -0.25 0.67 16 3 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -24.74 11.32 55.43 0.63 -24.12 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.51 11.96 7.11 -10.99 -0.08 11.88 16 13 O -0.47 -12.87 14.10 5.56 0.08 -12.79 16 14 N -0.64 -12.05 5.30 -13.27 -0.07 -12.12 16 15 C 0.31 5.64 8.00 -87.92 -0.70 4.93 16 16 N -0.48 -9.84 8.64 -10.45 -0.09 -9.94 16 17 C 0.08 1.37 7.69 -82.41 -0.63 0.74 16 18 C -0.29 -3.98 7.41 -35.38 -0.26 -4.24 16 19 S 0.10 1.42 23.22 -107.50 -2.50 -1.07 16 20 C -0.03 -0.26 6.80 -26.68 -0.18 -0.44 16 21 C -0.11 -0.97 7.13 -25.42 -0.18 -1.15 16 22 C -0.04 -0.49 6.81 -26.29 -0.18 -0.67 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.42 6.23 8.24 -40.82 -0.34 5.89 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 291.64 15.07 4.39 4.39 Total: -1.00 -33.23 291.64 -9.01 -42.24 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.92 Total: 0.58 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.52 Total: -3.94 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.47 Total: -46.17 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.50 Total: -1.07 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.23 -9.01 -42.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596678979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.716 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds