Wall clock time and date at job start Mon Mar 30 2020 07:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.38999 * 120.00291 * 179.97438 * 14 12 2 16 16 N 1.28925 * 124.93308 * 359.69734 * 15 14 12 17 17 C 1.33703 * 117.63965 * 179.78626 * 16 15 14 18 18 C 1.33686 * 113.24739 * 0.47885 * 17 16 15 19 19 S 1.70736 * 124.93188 * 180.02562 * 15 14 12 20 20 C 1.51754 * 110.90111 * 179.79314 * 18 17 16 21 21 C 1.54304 * 104.79640 * 17.26093 * 20 18 17 22 22 C 1.52633 * 137.04967 * 180.11510 * 17 16 15 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 28 28 H 1.09006 * 110.36726 * 136.08442 * 20 18 17 29 29 H 1.08992 * 110.37754 * 258.31363 * 20 18 17 30 30 H 1.09003 * 110.97700 * 91.91180 * 21 20 18 31 31 H 1.08997 * 110.97389 * 215.65256 * 21 20 18 32 32 H 1.08996 * 110.31767 * 44.07283 * 22 17 16 33 33 H 1.08996 * 110.32282 * 281.86861 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1704 -0.9046 -3.5896 16 7 2.9197 -1.9538 -3.5822 17 6 3.2778 -2.4685 -4.7631 18 6 2.7939 -1.7851 -5.8052 19 16 1.8370 -0.4318 -5.1959 20 6 3.2358 -2.4107 -7.1152 21 6 3.6996 -3.8327 -6.7362 22 6 4.1118 -3.6455 -5.2621 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 0.7089 1.1611 3.4845 27 1 1.1493 0.5391 -2.5436 28 1 2.4005 -2.4577 -7.8140 29 1 4.0600 -1.8436 -7.5477 30 1 2.8808 -4.5468 -6.8248 31 1 4.5505 -4.1405 -7.3438 32 1 3.8816 -4.5428 -4.6878 33 1 5.1743 -3.4129 -5.1928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596678979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:18 Heat of formation + Delta-G solvation = -4.151427 kcal Electronic energy + Delta-G solvation = -17497.112301 eV Core-core repulsion = 14649.033946 eV Total energy + Delta-G solvation = -2848.078355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.64672 -40.46980 -37.29604 -35.84843 -35.17654 -32.50824 -29.35410 -28.56972 -27.26125 -25.98875 -23.92385 -22.14870 -21.98266 -19.74676 -19.29896 -18.37229 -17.81992 -17.17273 -16.87570 -16.48554 -16.17789 -15.19216 -14.96748 -14.84851 -14.41588 -14.13264 -13.68761 -13.56668 -13.02014 -13.01382 -12.77990 -12.64727 -12.32379 -12.21023 -12.14163 -12.07283 -12.04662 -11.24493 -11.13200 -11.00063 -10.54807 -10.16754 -10.05447 -9.03691 -8.19540 -6.30125 -0.23384 -0.09315 0.66029 1.39866 1.41136 1.49861 1.56561 1.94648 2.08685 2.41959 3.06721 3.10584 3.63332 3.95436 4.16722 4.20450 4.52526 4.66643 4.70092 4.78172 4.82316 4.86152 4.92032 4.93591 5.10118 5.14777 5.33394 5.34986 5.43054 5.69137 5.83678 6.06655 6.27158 6.75492 6.92719 7.28355 7.40536 8.86234 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.037575 B = 0.004519 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.007191 B = 6193.899079 C = 6824.882806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.034 3.966 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.046 0.954 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.516 3.484 13 O -0.523 6.523 14 N -0.633 5.633 15 C 0.253 3.747 16 N -0.529 5.529 17 C 0.032 3.968 18 C -0.272 4.272 19 S 0.190 5.810 20 C -0.028 4.028 21 C -0.101 4.101 22 C -0.045 4.045 23 H 0.022 0.978 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.267 0.733 27 H 0.434 0.566 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -2.078 -21.624 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.303 3.697 13 O -0.394 6.394 14 N -0.287 5.287 15 C -0.116 4.116 16 N -0.251 5.251 17 C -0.097 4.097 18 C -0.394 4.394 19 S 0.443 5.557 20 C -0.068 4.068 21 C -0.140 4.140 22 C -0.085 4.085 23 H 0.041 0.959 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.275 0.725 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.768 -1.988 -21.198 21.305 hybrid contribution 0.512 -0.595 1.525 1.716 sum 1.279 -2.583 -19.673 19.883 Atomic orbital electron populations 1.21612 0.94432 0.99669 1.02330 1.18857 0.95705 0.96178 0.88060 0.92932 1.21190 1.32132 1.12919 0.91021 0.93594 1.25538 0.95033 0.95695 1.01226 1.69915 1.36780 1.23262 1.24606 0.85650 0.78616 0.78716 0.78886 1.19533 1.20321 1.20340 1.22207 0.78665 0.84344 0.84522 1.90628 1.36087 1.26582 1.86095 1.43482 1.51919 1.30994 1.02259 1.23719 0.99077 0.94899 0.93937 1.65565 1.16564 1.12052 1.30969 1.22098 1.01456 1.01349 0.84845 1.27432 1.07182 1.00717 1.04083 1.83064 1.49811 1.27680 0.95095 1.20815 1.01842 0.94652 0.89467 1.22387 1.03164 0.95904 0.92529 1.21082 0.97990 0.92313 0.97137 0.95888 0.90385 0.92486 0.92344 0.72493 0.88510 0.88125 0.89778 0.86408 0.91063 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.87 71.98 0.64 -4.88 16 2 C 0.03 1.71 2.64 -12.29 -0.03 1.68 16 3 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.53 -31.36 8.37 25.60 0.21 -31.15 16 5 H 0.05 2.91 6.75 -2.91 -0.02 2.90 16 6 C 0.02 1.40 5.30 84.66 0.45 1.85 16 7 N -0.91 -50.42 11.32 21.45 0.24 -50.17 16 8 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.52 25.17 7.11 87.66 0.62 25.79 16 13 O -0.52 -30.24 14.10 -3.03 -0.04 -30.28 16 14 N -0.63 -23.96 5.30 -314.28 -1.66 -25.62 16 15 C 0.25 9.35 8.00 179.40 1.44 10.79 16 16 N -0.53 -22.41 8.64 -186.97 -1.62 -24.02 16 17 C 0.03 1.05 7.69 41.86 0.32 1.37 16 18 C -0.27 -6.83 7.41 24.99 0.19 -6.64 16 19 S 0.19 4.78 23.22 -56.49 -1.31 3.47 16 20 C -0.03 -0.40 6.80 30.63 0.21 -0.20 16 21 C -0.10 -1.33 7.13 31.44 0.22 -1.10 16 22 C -0.05 -1.04 6.81 30.88 0.21 -0.83 16 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 3.85 6.07 -2.39 -0.01 3.84 16 25 H 0.06 2.01 7.57 -2.38 -0.02 1.99 16 26 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.43 12.65 8.24 -92.70 -0.76 11.88 16 28 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.22 291.64 2.49 -73.73 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.38 Total: 8.85 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.48 Total: -3.33 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.04 Total: -99.82 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.04 Total: -30.28 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.31 Total: 3.47 kcal Total: -76.22 2.49 -73.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596678979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.575 kcal (2) G-P(sol) polarization free energy of solvation -76.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds